deoxyribose has been researched along with oligonucleotides in 50 studies
Timeframe | Studies, this research(%) | All Research% |
---|---|---|
pre-1990 | 7 (14.00) | 18.7374 |
1990's | 10 (20.00) | 18.2507 |
2000's | 24 (48.00) | 29.6817 |
2010's | 8 (16.00) | 24.3611 |
2020's | 1 (2.00) | 2.80 |
Authors | Studies |
---|---|
Fujimoto, K; Saito, I; Sugiyama, H; Tsutsumi, Y; Yamaguchi, E; Yamashita, K | 1 |
Addess, KJ; Feigon, J; Gilbert, DE; Olsen, RK | 1 |
Jain, S; Sundaralingam, M; Zon, G | 1 |
Berman, HM; Ginell, SL; Narayana, N; Russu, IM | 1 |
Lavrik, OI; Nevinskiĭ, GA | 1 |
Bailly, V; Verly, WG | 1 |
Kerckx, J | 1 |
Chauncey, MA; Cutbush, SD; Eaton, MA; Gunning, J; Mann, J; Millican, TA; Mock, GA; Neidle, S; Patel, TP | 1 |
Altona, C; Charubala, R; Doornbos, J; Pfleiderer, W | 1 |
Broka, C; Dickerson, RE; Drew, HR; Itakura, K; Takano, T; Tanaka, S; Wing, RM | 1 |
Altona, C; Haasnoot, CA; Mellema, JR; Van Boom, JH | 1 |
Gade, R; Kaplan, BE; Swiderski, PM; Wallace, RB | 1 |
Fadrná, E; Koca, J | 1 |
Damha, MJ; Robidoux, S | 1 |
Eckstein, F; Verma, S | 1 |
James, TL; Kainosho, M; Kojima, C; Ono, A | 1 |
Langley, DR | 1 |
Bevan, DR; Darden, TA; Li, L; Pedersen, LG | 1 |
Hall, KB; Williams, DJ | 2 |
Häberli, A; Leumann, CJ; Pompizi, I | 1 |
Aramini, JM; Germann, MW; Mujeeb, A; Ulyanov, NB | 1 |
Blackledge, M; Crouzy, S; Dabouis, V; Debouzy, JC; Favier, A; Gueiffier, A; Marion, D; Simorre, JP | 1 |
Maeda, M; Matsuyama, Y; Nagatsugi, F; Sasaki, S | 1 |
DeMott, MS; Demple, B; Greenberg, MM; Hwang, JT; Xu, YJ | 1 |
Kawai, K; Oyoshi, T; Sugiyama, H | 1 |
Awada, MM; Collins, C; Dedon, PC; Zhou, X | 1 |
Chen, J; Stubbe, J | 1 |
Schimmel, P; Tamura, K | 1 |
Meggers, E; Zhang, L | 1 |
Karlin, KD; Li, L; Rokita, SE | 1 |
Nielsen, KE; Spielmann, HP | 1 |
Altamirano, A; Basu, AK; Boorstein, RJ; Chan, MK; Cummings, A; Cunningham, RP; Ocampo, JE; Ocampo-Hafalla, MT; Teebor, GW | 1 |
Lilley, DM; Liu, J | 1 |
Brown, T; Fox, KR; Rachwal, PA | 1 |
Bernhard, WA; Gilbert, DC; Naumenko, KA; Purkayastha, S; Razskazovskiy, Y; Sharma, KK; Swarts, SG | 1 |
Cobb, AJ | 1 |
Herdewijn, P; Robeyns, K; Van Meervelt, L | 1 |
Haas, T; Heit, A; Latz, E; Metzger, J; Müller, T; Schmitz, F; Wagner, H | 1 |
Adams, T; Basu, AK; Brown, KL; Jasti, VP; Stone, MP | 1 |
Kurose, Y; Nagatsugi, F; Sasaki, S; Taniguchi, Y | 1 |
Fernández, S; Ferrero, M; Gotor, V; Martínez-Montero, S; Sanghvi, YS | 1 |
Al-Oudat, BA; Audat, SA; Bryant-Friedrich, AC; Love, CT | 1 |
Bellini, T; Clark, NA; Klussmann, S; Rossi, M; Zanchetta, G | 1 |
Priyakumar, UD; Suresh, G | 1 |
Ikeda, M; Kitade, Y; Kitamura, Y; Nagaya, Y; Nakashima, R; Shibata, A | 1 |
Abramova, TV; Golyshev, VM; Lomzov, AA; Pyshnyi, DV | 1 |
Antipova, OM; Golovin, AV; Kopylov, AM; Pavlova, GV; Reshetnikov, RV; Zavyalova, EG | 1 |
Istrate, A; Johannsen, S; Leumann, CJ; Sigel, RKO | 1 |
Hattori, S; Masaki, Y; Seio, K; Tabira, A; Wakatsuki, S | 1 |
4 review(s) available for deoxyribose and oligonucleotides
Article | Year |
---|---|
Modified oligonucleotides: synthesis and strategy for users.
Topics: Deoxyribose; Oligonucleotides; Pentoses; Purines; Pyrimidines; Thionucleotides | 1998 |
Molecular dynamic simulations of environment and sequence dependent DNA conformations: the development of the BMS nucleic acid force field and comparison with experimental results.
Topics: Adenine; Computer Simulation; Crystallography, X-Ray; Cytosine; Deoxyribose; DNA; Guanine; Magnetic Resonance Spectroscopy; Models, Chemical; Molecular Conformation; Oligonucleotides; Organophosphates; Thymine | 1998 |
Recent highlights in modified oligonucleotide chemistry.
Topics: Deoxyribose; Nucleic Acids; Nucleotides; Oligonucleotides; Organophosphorus Compounds | 2007 |
Advances in the Application of Modified Nucleotides in SELEX Technology.
Topics: Amino Acids; Aptamers, Nucleotide; Base Pairing; Click Chemistry; Deoxyribose; Nucleotidases; Oligonucleotides; SELEX Aptamer Technique | 2018 |
46 other study(ies) available for deoxyribose and oligonucleotides
Article | Year |
---|---|
Photochemical deoxyribose C2' oxidation in 5-iodouracil-containing hexanucleotide.
Topics: Deoxyribose; Oligonucleotides; Oxidation-Reduction; Photochemistry; Uracil | 1992 |
Proton NMR studies of [N-MeCys3,N-MeCys7]TANDEM binding to DNA oligonucleotides: sequence-specific binding at the TpA site.
Topics: Adenine Nucleotides; Anti-Bacterial Agents; Base Composition; Base Sequence; Binding Sites; Deoxyribose; DNA; Intercalating Agents; Magnetic Resonance Spectroscopy; Methylation; Molecular Sequence Data; Nucleic Acid Conformation; Oligonucleotides; Quinoxalines; Thymine Nucleotides; X-Ray Diffraction | 1992 |
Hexagonal crystal structure of the A-DNA octamer d(GTGTACAC) and its comparison with the tetragonal structure: correlated variations in helical parameters.
Topics: Base Composition; Carbohydrate Conformation; Deoxyribose; DNA; Models, Molecular; Nucleic Acid Conformation; Oligonucleotides; Stereoisomerism; X-Ray Diffraction | 1991 |
Crystal and molecular structure of a DNA fragment: d(CGTGAATTCACG).
Topics: Base Composition; Base Sequence; Binding Sites; Deoxyribonuclease EcoRI; Deoxyribose; DNA; Hydrogen Bonding; Molecular Sequence Data; Nucleic Acid Conformation; Oligonucleotides; Water; X-Ray Diffraction | 1991 |
[Protein-nucleic acid interactions in reactions catalyzed by eukaryotic and prokaryotic DNA-polymerases].
Topics: Animals; Catalysis; Deoxyribose; DNA; DNA Polymerase I; DNA-Directed DNA Polymerase; Eukaryotic Cells; Oligodeoxyribonucleotides; Oligonucleotides; Prokaryotic Cells; Proteins; Ribose | 1989 |
Importance of thiols in the repair mechanisms of DNA containing AP (apurinic or apyrimidinic) sites.
Topics: Apurinic Acid; Deoxyribonucleases, Type III Site-Specific; Deoxyribose; DNA Damage; DNA Repair; Mercaptoethanol; Micrococcus; Oligonucleotides; Polynucleotides; Spermine; Sulfhydryl Compounds; T-Phages; Thioglycolates | 1988 |
[Constrained conformation imposed on polynucleotides by various types of sugar].
Topics: Calorimetry; Deoxyribonucleotides; Deoxyribose; Glycosides; Methanol; Nucleic Acid Conformation; Oligonucleotides; Polynucleotides; Ribonucleotides; Ribose; Thermodynamics | 1974 |
Synthesis and biophysical studies of short oligodeoxynucleotides with novel modifications: a possible approach to the problem of mixed base oligodeoxynucleotide synthesis.
Topics: Deoxyribose; Genetic Code; Nucleic Acid Hybridization; Oligodeoxyribonucleotides; Oligonucleotides; Structure-Activity Relationship | 1984 |
Conformational analysis of the trinucleoside diphosphate 3'd(A2'-5'A2'-5'A). An NMR and CD study.
Topics: Circular Dichroism; Deoxyribose; Magnetic Resonance Spectroscopy; Nucleic Acid Conformation; Oligodeoxyribonucleotides; Oligonucleotides | 1983 |
Structure of a B-DNA dodecamer: conformation and dynamics.
Topics: Deoxyribose; Models, Molecular; Motion; Nucleic Acid Conformation; Oligodeoxyribonucleotides; Oligonucleotides | 1981 |
Complete assignment and conformational analysis of a deoxyribotetranucleotide. d(TAAT). A 360 and 500 Mhz NMR study.
Topics: Adenine; Deoxyribose; Magnetic Resonance Spectroscopy; Nucleic Acid Conformation; Oligodeoxyribonucleotides; Oligonucleotides; Thymine | 1981 |
Incorporation of nonbase residues into synthetic oligonucleotides and their use in the PCR.
Topics: Base Sequence; Deoxyribose; DNA; DNA Primers; DNA-Directed DNA Polymerase; Molecular Sequence Data; Oligonucleotides; Polymerase Chain Reaction; Propylene Glycols | 1993 |
CICADA interface with AMBER. An application on oligonucleotides and their fragments.
Topics: Algorithms; Deoxyadenosines; Deoxyribose; Hydrogen Bonding; Models, Molecular; Nucleic Acid Conformation; Nucleic Acids; Nucleosides; Oligonucleotides; Organophosphorus Compounds; Software | 1996 |
D-2-deoxyribose and D-arabinose, but not D-ribose, stabilize the cytosine tetrad (i-DNA) structure.
Topics: Arabinose; Carbohydrates; Cytosine; Deoxyribose; DNA; Models, Molecular; Nucleic Acid Conformation; Oligonucleotides; Phosphates; Ribose | 1997 |
DNA duplex dynamics: NMR relaxation studies of a decamer with uniformly 13C-labeled purine nucleotides.
Topics: Adenosine; Bacillus subtilis; Carbon Isotopes; Deoxyribose; DNA, Bacterial; Guanidine; Hydrogen; Magnetic Resonance Spectroscopy; Models, Chemical; Molecular Structure; Motion; Nitrogen Isotopes; Oligonucleotides; Purine Nucleotides; Rotation | 1998 |
Molecular dynamics simulations of the d(CCAACGTTGG)(2) decamer: influence of the crystal environment.
Topics: Computer Simulation; Crystallization; Deoxyribose; DNA; Magnesium; Models, Molecular; Nucleic Acid Conformation; Oligonucleotides | 2000 |
Experimental and theoretical studies of the effects of deoxyribose substitutions on the stability of the UUCG tetraloop.
Topics: Base Sequence; Computer Simulation; Deoxyribose; Hydrogen Bonding; Models, Molecular; Mutation; Nuclear Magnetic Resonance, Biomolecular; Nucleic Acid Conformation; Nucleosides; Nucleotides; Oligonucleotides; Ribose; RNA; RNA Stability; Solvents; Thermodynamics | 2000 |
Experimental and computational studies of the G[UUCG]C RNA tetraloop.
Topics: Bacteria; Base Pairing; Base Sequence; Computer Simulation; Deoxyribose; Eukaryotic Cells; Models, Molecular; Nuclear Magnetic Resonance, Biomolecular; Nucleic Acid Conformation; Nucleic Acid Denaturation; Oligonucleotides; Phylogeny; Pliability; Protons; RNA Stability; RNA, Ribosomal; Solvents; Stochastic Processes; Temperature; Thermodynamics | 2000 |
Oligodeoxynucleotides containing conformationally constrained abasic sites: a UV and fluorescence spectroscopic investigation on duplex stability and structure.
Topics: Deoxyribose; Nucleic Acid Conformation; Nucleic Acid Denaturation; Nucleic Acid Heteroduplexes; Oligonucleotides; Spectrometry, Fluorescence; Spectrophotometry, Ultraviolet; Temperature; Thermodynamics | 2000 |
Conformational dynamics in mixed alpha/beta-oligonucleotides containing polarity reversals: a molecular dynamics study using time-averaged restraints.
Topics: Base Pair Mismatch; Base Pairing; Deoxyribose; Isomerism; Models, Molecular; Nuclear Magnetic Resonance, Biomolecular; Nucleic Acid Conformation; Nucleic Acid Heteroduplexes; Oligonucleotides; Thermodynamics; Time Factors | 2000 |
Solution structure of 2-(pyrido[1,2-e]purin-4-yl)amino-ethanol intercalated in the DNA duplex d(CGATCG)2.
Topics: Antineoplastic Agents; Binding Sites; Deoxyribose; DNA; Imidazoles; Intercalating Agents; Nuclear Magnetic Resonance, Biomolecular; Nucleic Acid Conformation; Nucleic Acid Heteroduplexes; Oligonucleotides; Organophosphates; Protons; Purines; Pyridines; Solutions; Thermodynamics | 2001 |
Selective cross-linking to the adenine of the TA interrupting site within the triple helix.
Topics: Adenine; Base Pairing; Cross-Linking Reagents; Cytosine; Deoxyribose; Indicators and Reagents; Nucleic Acid Denaturation; Oligonucleotides; Purines; Vinyl Compounds | 2002 |
Action of human apurinic endonuclease (Ape1) on C1'-oxidized deoxyribose damage in DNA.
Topics: Carbon-Oxygen Lyases; Deoxyribose; DNA Damage; DNA-(Apurinic or Apyrimidinic Site) Lyase; Humans; Oligonucleotides; Phenanthrolines; Substrate Specificity | 2003 |
Efficient C2'alpha-hydroxylation of deoxyribose in protein-induced Z-form DNA.
Topics: Adenosine Deaminase; Chromatography, High Pressure Liquid; Circular Dichroism; Deoxyribose; DNA; DNA-Binding Proteins; Humans; Hydroxylation; Models, Molecular; Nucleic Acid Conformation; Oligonucleotides; Photochemistry; Protein Structure, Tertiary; Ribonuclease T1; RNA-Binding Proteins; Stereoisomerism; Substrate Specificity; Uracil | 2003 |
Analysis of 3'-phosphoglycolaldehyde residues in oxidized DNA by gas chromatography/negative chemical ionization/mass spectrometry.
Topics: Acetaldehyde; Animals; Cattle; Deoxyribose; DNA; DNA Damage; Gamma Rays; Gas Chromatography-Mass Spectrometry; Hydroxylamines; Oligonucleotides; Oxidation-Reduction | 2003 |
Synthesis and characterization of oligonucleotides containing a 4'-keto abasic site.
Topics: Apurinic Acid; Azides; Base Sequence; Borohydrides; Deoxyribose; Deoxyuracil Nucleotides; DNA Damage; DNA Glycosylases; DNA Repair; DNA, Single-Stranded; Gas Chromatography-Mass Spectrometry; Half-Life; Nucleic Acid Heteroduplexes; Oligonucleotides; Polynucleotides; Single-Strand Specific DNA and RNA Endonucleases; Sugar Phosphates; Uracil-DNA Glycosidase | 2004 |
Chiral-selective aminoacylation of an RNA minihelix.
Topics: Acylation; Alanine; Amino Acids; Deoxyribose; Leucine; Nucleic Acid Conformation; Oligodeoxyribonucleotides; Oligonucleotides; Oligoribonucleotides; Phenylalanine; Ribose; RNA, Transfer; RNA, Transfer, Amino Acyl; Stereoisomerism | 2004 |
An extremely stable and orthogonal DNA base pair with a simplified three-carbon backbone.
Topics: Base Pairing; Deoxyribose; DNA; Hydrogen Bonding; Hydrophobic and Hydrophilic Interactions; Nucleotides; Oligonucleotides; Oxyquinoline; Spectrophotometry, Ultraviolet | 2005 |
Changing selectivity of DNA oxidation from deoxyribose to Guanine by ligand design and a new binuclear copper complex.
Topics: Copper; Deoxyribose; DNA, Single-Stranded; Guanine; Ligands; Nucleic Acid Conformation; Oligonucleotides; Oxidation-Reduction | 2005 |
The structure of a mixed LNA/DNA:RNA duplex is driven by conformational coupling between LNA and deoxyribose residues as determined from 13C relaxation measurements.
Topics: Base Sequence; Deoxyribose; DNA; Magnetic Resonance Spectroscopy; Models, Chemical; Nucleic Acid Conformation; Nucleic Acid Hybridization; Oligonucleotides; Oligonucleotides, Antisense; RNA; RNA, Double-Stranded | 2005 |
Repair of thymine glycol by hNth1 and hNeil1 is modulated by base pairing and cis-trans epimerization.
Topics: Base Pairing; Catalysis; Deoxyribonuclease (Pyrimidine Dimer); Deoxyribose; DNA Damage; DNA Glycosylases; DNA Repair; Escherichia coli Proteins; Humans; Isomerism; Kinetics; Oligonucleotides; Purines; Substrate Specificity; Thymine | 2006 |
The role of specific 2'-hydroxyl groups in the stabilization of the folded conformation of kink-turn RNA.
Topics: Archaeoglobus fulgidus; Crystallography, X-Ray; Deoxyribose; Electrophoresis, Polyacrylamide Gel; Fluorescence Resonance Energy Transfer; Haloarcula marismortui; Humans; Hydrogen Bonding; Hydroxyl Radical; Metals; Models, Molecular; Nucleic Acid Conformation; Oligonucleotides; RNA; RNA, Archaeal; RNA, Small Nuclear; Thermodynamics; Thermus thermophilus | 2007 |
Sequence effects of single base loops in intramolecular quadruplex DNA.
Topics: Base Sequence; Deoxyribose; DNA; G-Quadruplexes; Nucleic Acid Conformation; Oligonucleotides; Thermodynamics | 2007 |
Mechanisms of direct radiation damage in DNA, based on a study of the yields of base damage, deoxyribose damage, and trapped radicals in d(GCACGCGTGC)(2).
Topics: Base Pairing; Computer Simulation; Deoxyribose; DNA Damage; Dose-Response Relationship, Radiation; Free Radicals; Models, Chemical; Models, Genetic; Oligonucleotides; Radiation Dosage; X-Rays | 2007 |
Structure of the fully modified left-handed cyclohexene nucleic acid sequence GTGTACAC.
Topics: Base Sequence; Crystallography, X-Ray; Cyclohexenes; Deoxyribose; Models, Molecular; Molecular Conformation; Oligonucleotides | 2008 |
The DNA sugar backbone 2' deoxyribose determines toll-like receptor 9 activation.
Topics: Animals; Dendritic Cells; Deoxyribose; DNA, Single-Stranded; Endosomes; Flow Cytometry; Humans; Male; Membrane Glycoproteins; Mice; Mice, Inbred C57BL; Mice, Transgenic; Oligonucleotides; Pattern Recognition, Physiological; Toll-Like Receptor 7; Toll-Like Receptor 9 | 2008 |
Interconversion of the cis-5R,6S- and trans-5R,6R-thymine glycol lesions in duplex DNA.
Topics: Carbohydrate Conformation; Deoxyribose; DNA; Nuclear Magnetic Resonance, Biomolecular; Nucleic Acid Conformation; Oligonucleotides; Thermodynamics; Thymine | 2008 |
Synthesis of the new nucleoside analogue connecting 2-amino-6-vinylpurine to the 2'-deoxyribose skeleton via the methylene linker.
Topics: 2-Aminopurine; Cross-Linking Reagents; Deoxyribose; Oligonucleotides; Purine Nucleosides; Purines; Vinyl Compounds | 2008 |
An expedient biocatalytic procedure for abasic site precursors useful in oligonucleotide synthesis.
Topics: Acylation; Biocatalysis; Chromobacterium; Deoxyribose; Green Chemistry Technology; Lipase; Oligonucleotides; Pseudomonas | 2011 |
Synthesis of C3' modified nucleosides for selective generation of the C3'-deoxy-3'-thymidinyl radical: a proposed intermediate in LEE induced DNA damage.
Topics: Carbon; Deoxyribose; Dideoxynucleosides; DNA; DNA Damage; Electron Spin Resonance Spectroscopy; Electrons; Free Radicals; Light; Models, Molecular; Nucleosides; Nucleotides; Oligonucleotides; Photochemistry; Spectrophotometry, Ultraviolet | 2012 |
Propagation of chirality in mixtures of natural and enantiomeric DNA oligomers.
Topics: Base Sequence; Deoxyribose; DNA; Molecular Sequence Data; Oligonucleotides; Stereoisomerism | 2013 |
Atomistic investigation of the effect of incremental modification of deoxyribose sugars by locked nucleic acid (β-D-LNA and α-L-LNA) moieties on the structures and thermodynamics of DNA-RNA hybrid duplexes.
Topics: Base Sequence; Deoxyribose; DNA; Molecular Dynamics Simulation; Nucleic Acid Conformation; Oligonucleotides; RNA; Thermodynamics | 2014 |
Practical and Reliable Synthesis of 1,2-Dideoxy-d-ribofuranose and its Application in RNAi Studies.
Topics: Deoxyribose; Gene Expression; Gene Silencing; Genes, Reporter; HeLa Cells; Humans; Oligonucleotides; RNA Interference; RNA, Small Interfering | 2016 |
A new approach to precise thermodynamic characterization of hybridization properties of modified oligonucleotides: Comparative studies of deoxyribo- and glycine morpholine pentaadenines.
Topics: Alkadienes; Deoxyribose; Glycine; Models, Molecular; Morpholines; Nucleic Acid Hybridization; Oligonucleotides; Osmolar Concentration; Static Electricity; Thermodynamics | 2018 |
NMR solution structure of tricyclo-DNA containing duplexes: insight into enhanced thermal stability and nuclease resistance.
Topics: Base Pairing; Circular Dichroism; Deoxyribose; DNA; Magnetic Resonance Spectroscopy; Models, Molecular; Nucleic Acid Conformation; Nucleic Acid Hybridization; Oligonucleotides; RNA; Thermodynamics | 2019 |
Insertion of a methylene group into the backbone of an antisense oligonucleotide reveals the importance of deoxyribose recognition by RNase H.
Topics: Deoxyribose; Oligonucleotides; Oligonucleotides, Antisense; Phosphates; Ribonuclease H | 2022 |