bacteriochlorophylls and 2--deoxyuridylic-acid

The structure of Fenna-Matthews-Olson (FMO) light-harvesting complex had long been recognized as containing seven bacteriochlorophyll (BChl) molecules. Recently, an additional BChl molecule was discovered in the crystal structure of the FMO complex, which may serve as a link between baseplate and the remaining seven molecules. Here, we investigate excitation energy transfer (EET) process by simulating single-molecule pump-dump experiment in the eight-molecules complex. We adopt the coherent modified Redfield theory and non-Markovian quantum jump method to simulate EET dynamics. This scheme provides a practical approach of detecting the realistic EET pathway in BChl complexes with currently available experimental technology. And it may assist optimizing design of artificial light-harvesting devices.

Topics: Bacterial Proteins; Bacteriochlorophylls; Chlorobi; Crystallography, X-Ray; Deoxyuracil Nucleotides; Energy Transfer; Lasers; Light; Light-Harvesting Protein Complexes; Markov Chains; Models, Theoretical; Oscillometry; Photosynthesis; Quantum Theory