Page last updated: 2024-08-17

aspartic acid and retinaldehyde

aspartic acid has been researched along with retinaldehyde in 38 studies

Research

Studies (38)

TimeframeStudies, this research(%)All Research%
pre-19903 (7.89)18.7374
1990's15 (39.47)18.2507
2000's15 (39.47)29.6817
2010's5 (13.16)24.3611
2020's0 (0.00)2.80

Authors

AuthorsStudies
Masland, RH; Pepperberg, DR1
Betlach, MC; Kliger, DS; Miercke, LJ; Milder, SJ; Shand, RF; Stroud, RM; Thorgeirsson, TE1
Nathans, J2
Duñach, M; Khorana, HG; Marti, T; Rothschild, KJ1
Oprian, DD; Zhukovsky, EA1
Engelhard, M; Hess, B; Kuschmitz, D1
Friedman, N; Ottolenghi, M; Rousso, I; Sheves, M1
Beck, M; Fahmy, K; Jäger, F; Sakmar, TP; Siebert, F; Zvyaga, TA1
Schulten, K; Sheves, M; Xu, D1
Kandori, H; Lanyi, JK; Maeda, A; Needleman, R; Richter, HT1
Friedman, N; Gat, Y; Ottolenghi, M; Sheves, M1
Friedman, N; Hatanaka, M; Kandori, H; Kashima, R; Lanyi, JK; Maeda, A; Needleman, R; Sheves, M1
Bressler, S; Eliash, T; Friedman, N; Fu, X; Ottolenghi, M; Sheves, M1
Brown, LS; Dioumaev, AK; Lanyi, JK; Needleman, R4
Lanyi, JK; Luecke, H; Richter, HT1
Bennett, AE; Engelhard, M; Griffin, RG; Griffiths, JM; Herzfeld, J; Lugtenburg, J; Raap, J; Siebert, F1
Bergo, V; Rothschild, KJ; Scott, KL; Spudich, EN; Spudich, JL1
Balashov, SP; Ebrey, TG; Gennis, RB; Kandori, H; Maeda, A; Tomson, FL1
Farrens, DL; Janz, JM1
Aharoni, A; Ottolenghi, M; Sheves, M1
Babu, KR; Birge, RR; Dukkipati, A; Knox, BE1
Gross, AK; Oprian, DD; Xie, G2
Brown, LS; Lanyi, JK; Schobert, B1
Balashov, SP; Dioumaev, AK; Imasheva, ES; Lanyi, JK; Wang, JM1
Gerwert, K; Kandt, C; Schlitter, J1
Asato, AE; Sheves, M; Zadok, U1
Brown, LS; Fan, Y; Furutani, Y; Kandori, H; Shi, L; Sumii, M; Waschuk, SA1
Cilluffo, MC; Cornwall, MC; Dizhoor, AM; Fain, GL; Olshevskaya, EV; Sieving, PA; Woodruff, ML1
Homma, M; Irieda, H; Kandori, H; Kawanabe, A; Reissig, L; Sudo, Y1
Bamann, C; Glaubitz, C; Herz, J; Verhoefen, MK; Wachtveitl, J; Weber, I1
Alvarez, S; Bourdelande, JL; de Lera, AR; Domínguez, M; Lórenz-Fonfría, VA; Padrós, E; Perálvarez-Marín, A; Simón-Vázquez, R1
Heberle, J; Lórenz-Fonfría, VA1
Barty, A; Båth, P; Borin, V; Bosman, R; Brünle, S; Carbajo, S; Furrer, A; Gashi, D; Hunter, M; Iwata, S; Jaeger, K; James, D; Kekilli, D; Koglin, J; Lane, T; Milne, C; Nango, E; Nass, K; Neutze, R; Nogly, P; Ozerov, D; Panneels, V; Schapiro, I; Schertler, G; Seaberg, M; Skopintsev, P; Standfuss, J; Tanaka, T; Weierstall, U; Weinert, T; White, T; Wu, W1

Reviews

1 review(s) available for aspartic acid and retinaldehyde

ArticleYear
Channelrhodopsin unchained: structure and mechanism of a light-gated cation channel.
    Biochimica et biophysica acta, 2014, Volume: 1837, Issue:5

    Topics: Aspartic Acid; Chlamydomonas reinhardtii; Glutamic Acid; Hydrogen-Ion Concentration; Ion Channel Gating; Ion Transport; Kinetics; Light; Models, Molecular; Protein Conformation; Protons; Retinaldehyde; Rhodopsin; Thermodynamics; Time Factors

2014

Other Studies

37 other study(ies) available for aspartic acid and retinaldehyde

ArticleYear
Retinal-induced sensitization of light-adapted rabbit photoreceptors.
    Brain research, 1978, Jul-28, Volume: 151, Issue:1

    Topics: Animals; Aspartic Acid; Dark Adaptation; Photic Stimulation; Photoreceptor Cells; Rabbits; Retina; Retinaldehyde; Synaptic Transmission; Vitamin A

1978
Effects of Asp-96----Asn, Asp-85----Asn, and Arg-82----Gln single-site substitutions on the photocycle of bacteriorhodopsin.
    Biochemistry, 1991, Sep-24, Volume: 30, Issue:38

    Topics: Arginine; Asparagine; Aspartic Acid; Bacteriorhodopsins; Biological Transport, Active; Glutamine; Halobacterium; In Vitro Techniques; Kinetics; Light; Photosynthesis; Recombinant Proteins; Retinaldehyde; Schiff Bases; Spectrum Analysis; Structure-Activity Relationship

1991
Determinants of visual pigment absorbance: identification of the retinylidene Schiff's base counterion in bovine rhodopsin.
    Biochemistry, 1990, Oct-16, Volume: 29, Issue:41

    Topics: Animals; Asparagine; Aspartic Acid; Cattle; Glutamates; Glutamic Acid; Glutamine; Kinetics; Membranes; Models, Molecular; Mutagenesis, Site-Directed; Plasmids; Protein Conformation; Recombinant Proteins; Retinaldehyde; Rhodopsin; Schiff Bases; Spectrophotometry

1990
Determinants of visual pigment absorbance: role of charged amino acids in the putative transmembrane segments.
    Biochemistry, 1990, Jan-30, Volume: 29, Issue:4

    Topics: Amino Acid Sequence; Animals; Arginine; Aspartic Acid; Cattle; Gene Expression; Glutamates; Histidine; Lysine; Membrane Proteins; Molecular Sequence Data; Molecular Structure; Mutation; Retinal Pigments; Retinaldehyde; Rhodopsin; Spectrophotometry

1990
Uv-visible spectroscopy of bacteriorhodopsin mutants: substitution of Arg-82, Asp-85, Tyr-185, and Asp-212 results in abnormal light-dark adaptation.
    Proceedings of the National Academy of Sciences of the United States of America, 1990, Volume: 87, Issue:24

    Topics: Arginine; Aspartic Acid; Bacteriorhodopsins; Darkness; Halobacterium; Light; Mutagenesis, Site-Directed; Retinaldehyde; Spectrophotometry; Tyrosine

1990
Effect of carboxylic acid side chains on the absorption maximum of visual pigments.
    Science (New York, N.Y.), 1989, Nov-17, Volume: 246, Issue:4932

    Topics: Aspartic Acid; Glutamates; Glutamic Acid; Hydrogen-Ion Concentration; Hydroxylamine; Hydroxylamines; Models, Molecular; Mutation; Protein Conformation; Retinal Pigments; Retinaldehyde; Retinoids; Rhodopsin; Schiff Bases; Spectrophotometry

1989
Synoptic views on the photochemical reaction cycle in bacteriorhodopsin.
    Progress in clinical and biological research, 1984, Volume: 164

    Topics: Aspartic Acid; Bacteriorhodopsins; Biological Transport, Active; Carotenoids; Halobacterium; Isomerism; Light; Photochemistry; Protons; Retinaldehyde; Structure-Activity Relationship; Tyrosine

1984
pKa of the protonated Schiff base and aspartic 85 in the bacteriorhodopsin binding site is controlled by a specific geometry between the two residues.
    Biochemistry, 1995, Sep-19, Volume: 34, Issue:37

    Topics: Aspartic Acid; Bacteriorhodopsins; Binding Sites; Hydrogen-Ion Concentration; Light; Molecular Structure; Proton Pumps; Protons; Retinaldehyde; Schiff Bases; Spectrophotometry

1995
Protonation states of membrane-embedded carboxylic acid groups in rhodopsin and metarhodopsin II: a Fourier-transform infrared spectroscopy study of site-directed mutants.
    Proceedings of the National Academy of Sciences of the United States of America, 1993, Nov-01, Volume: 90, Issue:21

    Topics: Amino Acid Sequence; Animals; Asparagine; Aspartic Acid; Cell Line; Glutamates; Glutamic Acid; Glutamine; Kinetics; Light; Mutagenesis, Site-Directed; Protein Conformation; Recombinant Proteins; Retinaldehyde; Rhodopsin; Spectrophotometry; Spectroscopy, Fourier Transform Infrared; Time Factors; Transfection

1993
Molecular dynamics study of the M412 intermediate of bacteriorhodopsin.
    Biophysical journal, 1995, Volume: 69, Issue:6

    Topics: Amino Acid Sequence; Aspartic Acid; Bacteriorhodopsins; Calorimetry; Computer Simulation; Kinetics; Light; Models, Molecular; Models, Structural; Protein Conformation; Protein Structure, Secondary; Retinaldehyde; Schiff Bases; Software

1995
Relationship of retinal configuration and internal proton transfer at the end of the bacteriorhodopsin photocycle.
    Biochemistry, 1996, Dec-03, Volume: 35, Issue:48

    Topics: Aspartic Acid; Bacteriorhodopsins; Chemical Phenomena; Chemistry, Physical; Kinetics; Protons; Retinaldehyde; Spectroscopy, Fourier Transform Infrared

1996
Interaction between Asp-85 and the proton-releasing group in bacteriorhodopsin. A study of an O-like photocycle intermediate.
    Biochemistry, 1997, Apr-08, Volume: 36, Issue:14

    Topics: Arylsulfonates; Aspartic Acid; Bacteriorhodopsins; Bromphenol Blue; Halobacterium; Hydrogen-Ion Concentration; Kinetics; Lasers; Molecular Structure; Photolysis; Protons; Retinaldehyde; Spectrophotometry; Titrimetry

1997
Trp86 --> Phe replacement in bacteriorhodopsin affects a water molecule near Asp85 and light adaptation.
    Biochemistry, 1997, May-06, Volume: 36, Issue:18

    Topics: Aspartic Acid; Bacteriorhodopsins; Halobacterium; Light; Mutation; Phenylalanine; Photochemistry; Protein Binding; Retinaldehyde; Spectroscopy, Fourier Transform Infrared; Tryptophan; Water

1997
Titration kinetics of Asp-85 in bacteriorhodopsin: exclusion of the retinal pocket as the color-controlling cation binding site.
    FEBS letters, 1997, Oct-20, Volume: 416, Issue:2

    Topics: Aspartic Acid; Bacteriorhodopsins; Binding Sites; Calcium; Cations, Divalent; Kinetics; Magnesium; Quaternary Ammonium Compounds; Retinaldehyde; Spectrophotometry; Time Factors

1997
Local-access model for proton transfer in bacteriorhodopsin.
    Biochemistry, 1998, Mar-17, Volume: 37, Issue:11

    Topics: Amino Acid Substitution; Asparagine; Aspartic Acid; Bacteriorhodopsins; Electron Transport; Halobacterium salinarum; Hydrogen-Ion Concentration; Isomerism; Kinetics; Models, Biological; Mutagenesis, Site-Directed; Photochemistry; Protons; Retinaldehyde; Schiff Bases

1998
Proton transfer pathways in bacteriorhodopsin at 2.3 angstrom resolution.
    Science (New York, N.Y.), 1998, Jun-19, Volume: 280, Issue:5371

    Topics: Aspartic Acid; Bacteriorhodopsins; Binding Sites; Crystallography, X-Ray; Hydrogen Bonding; Hydrogen-Ion Concentration; Ligands; Light; Models, Molecular; Photochemistry; Protein Conformation; Protein Structure, Secondary; Protons; Retinaldehyde; Schiff Bases; Water

1998
Partitioning of free energy gain between the photoisomerized retinal and the protein in bacteriorhodopsin.
    Biochemistry, 1998, Jul-14, Volume: 37, Issue:28

    Topics: Amino Acid Substitution; Asparagine; Aspartic Acid; Bacterial Proteins; Bacteriorhodopsins; Cysteine; Energy Transfer; Halobacterium salinarum; Hydrogen-Ion Concentration; Isomerism; Mutagenesis, Site-Directed; Phenylalanine; Photochemistry; Retinaldehyde; Spectrophotometry; Spectroscopy, Fourier Transform Infrared; Spectrum Analysis, Raman

1998
Connectivity of the retinal Schiff base to Asp85 and Asp96 during the bacteriorhodopsin photocycle: the local-access model.
    Biophysical journal, 1998, Volume: 75, Issue:3

    Topics: Aspartic Acid; Bacteriorhodopsins; Biophysical Phenomena; Biophysics; Halobacterium salinarum; Hydrogen-Ion Concentration; Kinetics; Light; Models, Chemical; Mutagenesis, Site-Directed; Photochemistry; Protein Conformation; Protons; Retinaldehyde; Schiff Bases; Spectroscopy, Fourier Transform Infrared

1998
Structural investigation of the active site in bacteriorhodopsin: geometric constraints on the roles of Asp-85 and Asp-212 in the proton-pumping mechanism from solid state NMR.
    Biochemistry, 2000, Jan-18, Volume: 39, Issue:2

    Topics: Anisotropy; Aspartic Acid; Bacteriorhodopsins; Binding Sites; Magnetic Resonance Spectroscopy; Retinaldehyde; Spectroscopy, Fourier Transform Infrared

2000
FTIR analysis of the SII540 intermediate of sensory rhodopsin II: Asp73 is the Schiff base proton acceptor.
    Biochemistry, 2000, Mar-21, Volume: 39, Issue:11

    Topics: Archaeal Proteins; Aspartic Acid; Bacteriorhodopsins; Carotenoids; Cold Temperature; Halobacterium salinarum; Halorhodopsins; Mutagenesis, Site-Directed; Oxygen; Peptides; Photochemistry; Protein Conformation; Protons; Retinaldehyde; Schiff Bases; Sensory Rhodopsins; Spectroscopy, Fourier Transform Infrared

2000
Relocation of internal bound water in bacteriorhodopsin during the photoreaction of M at low temperatures: an FTIR study.
    Biochemistry, 2000, Aug-22, Volume: 39, Issue:33

    Topics: Aspartic Acid; Bacteriorhodopsins; Cell Polarity; Glutamic Acid; Halobacterium; Mutation; Proton Pumps; Retinaldehyde; Schiff Bases; Spectroscopy, Fourier Transform Infrared; Threonine; Valine; Water

2000
Engineering a functional blue-wavelength-shifted rhodopsin mutant.
    Biochemistry, 2001, Jun-19, Volume: 40, Issue:24

    Topics: Alanine; Amino Acid Sequence; Amino Acid Substitution; Animals; Aspartic Acid; Cattle; COS Cells; Glutamic Acid; Models, Molecular; Molecular Sequence Data; Mutagenesis, Site-Directed; Photochemistry; Retinaldehyde; Rhodopsin; Serine; Spectrometry, Fluorescence; Spectrophotometry, Ultraviolet; Thermodynamics; Threonine; Transducin

2001
Coupling of the reisomerization of the retinal, proton uptake, and reprotonation of Asp-96 in the N photointermediate of bacteriorhodopsin.
    Biochemistry, 2001, Sep-25, Volume: 40, Issue:38

    Topics: Amino Acid Sequence; Amino Acid Substitution; Aspartic Acid; Bacteriorhodopsins; Binding Sites; Crystallography, X-Ray; Halobacterium salinarum; Hydrogen-Ion Concentration; Kinetics; Light; Models, Molecular; Molecular Conformation; Mutagenesis, Site-Directed; Protein Structure, Secondary; Recombinant Proteins; Retinaldehyde; Spectroscopy, Fourier Transform Infrared; Stereoisomerism

2001
Retinal isomerization in bacteriorhodopsin is controlled by specific chromophore-protein interactions. A study with noncovalent artificial pigments.
    Biochemistry, 2001, Nov-06, Volume: 40, Issue:44

    Topics: Aspartic Acid; Bacteriorhodopsins; Binding Sites; Circular Dichroism; Halobacterium salinarum; Hydrogen-Ion Concentration; Isomerism; Light; Molecular Structure; Pigments, Biological; Protein Binding; Retinaldehyde; Schiff Bases

2001
Regulation of phototransduction in short-wavelength cone visual pigments via the retinylidene Schiff base counterion.
    Biochemistry, 2001, Nov-20, Volume: 40, Issue:46

    Topics: Animals; Aspartic Acid; Cattle; COS Cells; Glutamic Acid; Glutamine; Mutagenesis, Site-Directed; Protons; Retinal Cone Photoreceptor Cells; Retinaldehyde; Retinoids; Rod Opsins; Schiff Bases; Spectrophotometry, Ultraviolet; Static Electricity; Vision, Ocular; Xenopus

2001
An opsin mutant with increased thermal stability.
    Biochemistry, 2003, Feb-25, Volume: 42, Issue:7

    Topics: Amino Acid Sequence; Animals; Asparagine; Aspartic Acid; Cattle; COS Cells; Cross-Linking Reagents; Cysteine; Disulfides; Dithiothreitol; Light; Molecular Sequence Data; Mutagenesis, Site-Directed; Protein Denaturation; Recombinant Proteins; Retinaldehyde; Rhodopsin; Thermodynamics; Transducin; Transfection

2003
Slow binding of retinal to rhodopsin mutants G90D and T94D.
    Biochemistry, 2003, Feb-25, Volume: 42, Issue:7

    Topics: Alanine; Amino Acid Sequence; Animals; Aspartic Acid; Glutamic Acid; Glutamine; Glycine; Humans; Molecular Sequence Data; Mutagenesis, Insertional; Night Blindness; Protein Binding; Protein Denaturation; Retinaldehyde; Rhodopsin; Schiff Bases; Spectrophotometry, Ultraviolet; Threonine

2003
Crystallographic structures of the M and N intermediates of bacteriorhodopsin: assembly of a hydrogen-bonded chain of water molecules between Asp-96 and the retinal Schiff base.
    Journal of molecular biology, 2003, Jul-11, Volume: 330, Issue:3

    Topics: Aspartic Acid; Bacteriorhodopsins; Crystallography, X-Ray; Hydrogen Bonding; Models, Molecular; Point Mutation; Protein Conformation; Retinaldehyde; Schiff Bases; Spectroscopy, Fourier Transform Infrared; Valine; Water

2003
Selectivity of retinal photoisomerization in proteorhodopsin is controlled by aspartic acid 227.
    Biochemistry, 2004, Feb-17, Volume: 43, Issue:6

    Topics: Amino Acid Substitution; Asparagine; Aspartic Acid; Bacteriorhodopsins; Binding Sites; Darkness; Gammaproteobacteria; Hydrogen-Ion Concentration; Isomerism; Light; Retinaldehyde; Rhodopsin; Rhodopsins, Microbial; Solubility; Spectroscopy, Fourier Transform Infrared; Temperature

2004
Water dynamics simulation as a tool for probing proton transfer pathways in a heptahelical membrane protein.
    Proteins, 2005, Feb-15, Volume: 58, Issue:3

    Topics: Aspartic Acid; Bacteriorhodopsins; Binding Sites; Cell Membrane; Computer Simulation; Cytoplasm; Halobacterium salinarum; Hydrogen Bonding; Hydrogen-Ion Concentration; Light; Membrane Proteins; Models, Chemical; Models, Molecular; Protein Conformation; Proteins; Protons; Retinaldehyde; Schiff Bases; Thermodynamics; Water

2005
Titration of the bacteriorhodopsin Schiff base involves titration of an additional protein residue.
    Biochemistry, 2005, Jun-14, Volume: 44, Issue:23

    Topics: Amino Acid Substitution; Aspartic Acid; Bacteriorhodopsins; Deuterium Exchange Measurement; Glutamic Acid; Glutamine; Halobacterium salinarum; Hydrogen-Ion Concentration; Photochemistry; Protons; Retinaldehyde; Schiff Bases; Titrimetry

2005
Conformational coupling between the cytoplasmic carboxylic acid and the retinal in a fungal light-driven proton pump.
    Biochemistry, 2006, Dec-26, Volume: 45, Issue:51

    Topics: Amino Acid Substitution; Ascomycota; Asparagine; Aspartic Acid; Carboxylic Acids; Cytoplasm; Glutamic Acid; Lasers; Neurospora; Protein Conformation; Proton Pumps; Retinaldehyde; Rhodopsin

2006
Night blindness and the mechanism of constitutive signaling of mutant G90D rhodopsin.
    The Journal of neuroscience : the official journal of the Society for Neuroscience, 2008, Nov-05, Volume: 28, Issue:45

    Topics: Animals; Aspartic Acid; Calcium; Carrier Proteins; cis-trans-Isomerases; Dark Adaptation; Disease Models, Animal; Dose-Response Relationship, Radiation; Eye Proteins; Glycine; Kinetics; Light Signal Transduction; Membrane Potentials; Mice; Mice, Transgenic; Mutation; Night Blindness; Opsins; Photic Stimulation; Retinal Rod Photoreceptor Cells; Retinaldehyde; Rhodopsin; Spectrum Analysis; Time Factors

2008
Structural characteristics around the β-ionone ring of the retinal chromophore in Salinibacter sensory rhodopsin I.
    Biochemistry, 2011, Jun-07, Volume: 50, Issue:22

    Topics: Aspartic Acid; Bacteroidetes; Hydroxylamine; Norisoprenoids; Retinaldehyde; Sensory Rhodopsins; Signal Transduction; Spectroscopy, Fourier Transform Infrared; Structure-Activity Relationship

2011
Critical role of Asp227 in the photocycle of proteorhodopsin.
    Biochemistry, 2012, Jul-17, Volume: 51, Issue:28

    Topics: Aspartic Acid; Deuterium Oxide; Hydrogen-Ion Concentration; Isomerism; Models, Molecular; Mutation; Photochemical Processes; Retinaldehyde; Rhodopsin; Rhodopsins, Microbial; Spectrophotometry; Water

2012
Probing a polar cluster in the retinal binding pocket of bacteriorhodopsin by a chemical design approach.
    PloS one, 2012, Volume: 7, Issue:8

    Topics: Adaptation, Ocular; Aspartic Acid; Bacteriorhodopsins; Binding Sites; Biochemistry; Biological Transport; Halobacterium salinarum; Models, Molecular; Mutant Proteins; Protein Denaturation; Protein Stability; Retinaldehyde; Temperature

2012
Retinal isomerization in bacteriorhodopsin captured by a femtosecond x-ray laser.
    Science (New York, N.Y.), 2018, 07-13, Volume: 361, Issue:6398

    Topics: Aspartic Acid; Bacteriorhodopsins; Ion Transport; Isomerism; Protein Conformation; Retinaldehyde; Schiff Bases; Time Factors; Water; X-Rays

2018