alanine and p-cyanophenylalanine

alanine has been researched along with p-cyanophenylalanine in 28 studies

Research

Studies (28)

TimeframeStudies, this research(%)All Research%
pre-19900 (0.00)18.7374
1990's0 (0.00)18.2507
2000's4 (14.29)29.6817
2010's23 (82.14)24.3611
2020's1 (3.57)2.80

Authors

AuthorsStudies
Gupta, R; Marek, P; Raleigh, DP1
Blasie, JK; Johansson, JS; Liu, J; Strzalka, J; Tronin, A1
Blasie, JK; Liu, J; Zou, H1
Brewer, SH; Carrico, I; Chung, J; Green, DF; Mehl, RA; Miller, AM; Miyake-Stoner, SJ; Patsalo, V; Raleigh, DP; Taskent-Sezgin, H1
Decatur, SM; Gleason, KA; Inouye, H; Kirschner, DA; Zhang, D1
Carrico, I; Chung, J; Goldberg, D; Marek, P; Raleigh, DP; Taskent-Sezgin, H; Thomas, R1
Marek, P; Mukherjee, S; Raleigh, DP; Zanni, MT1
Ahmad, I; Jahnz, M; Schultz, PG; Spraggon, G; Young, DD; Young, TS1
Dixon, NE; Kuppan, KV; Loh, CT; Loscha, KV; Otting, G; Ozawa, K1
Bagchi, S; Boxer, SG; Fayer, MD1
Bilsel, O; Gai, F; Serrano, AL1
Du, D; Liu, H; Ojha, B1
Hopkins, WS; Marta, RA; McMahon, TB1
Morgera, F; Pacor, S; Rizzo, R; Tossi, A; Xhindoli, D; Zinth, U1
Cardenas, AE; Elber, R; Shrestha, R; Webb, LJ1
Biava, H; Budisa, N; Hildebrandt, P; Koksch, B; Völler, J1
Gai, F; Mintzer, MR; Troxler, T1
Andino, C; Cosme, P; Du, D; Gonzalez, WG; Lantz, R; Liu, H; Miksovska, J; Oyola, R; Rivera, N; Terentis, AC; Wojcikiewicz, EP1
Ahmed, IA; Berríos, MI; Gai, F; Pazos, IM1
Ballano, G; Biondi, B; Bobone, S; Bortolotti, A; De Zotti, M; Formaggio, F; Palleschi, A; Stella, L; Toniolo, C1
Bilsel, O; Peran, I; Raleigh, DP; Watson, MD1
Basom, EJ; Cho, M; Maj, M; Thielges, MC1
Peran, I; Raleigh, DP; Watson, MD1
Chen, J; Ding, B; Gai, F; Mukherjee, D1
Horness, RE; Le Sueur, AL; Ramos, S; Scott, KJ; Thielges, MC1
Brewer, SH; Lee, BU; Maurici, N; Phillips-Piro, CM; Savidge, N1
Collins, JA; Horness, RE; Le Sueur, AL; Ramos, S; Specker, JT; Thibodeau, KE; Thielges, MC1
Budisa, N; Buhrke, D; Hildebrandt, P; Hoang, TO; Katz, S; Kozuch, J; Kraskov, A; Michael, N; Mroginski, MA; Nguyen, AD; Scheerer, P; Siebert, F; von Sass, J; Zebger, I1

Other Studies

28 other study(ies) available for alanine and p-cyanophenylalanine

ArticleYear
The fluorescent amino acid p-cyanophenylalanine provides an intrinsic probe of amyloid formation.
    Chembiochem : a European journal of chemical biology, 2008, Jun-16, Volume: 9, Issue:9

    Topics: Alanine; Amino Acid Sequence; Amyloid; Benzothiazoles; Diabetes Mellitus, Type 2; Fluorescence; Fluorescent Dyes; Humans; Islet Amyloid Polypeptide; Kinetics; Molecular Sequence Data; Nitriles; Phenylalanine; Point Mutation; Protein Binding; Thiazoles; Time Factors

2008
Mechanism of interaction between the general anesthetic halothane and a model ion channel protein, II: Fluorescence and vibrational spectroscopy using a cyanophenylalanine probe.
    Biophysical journal, 2009, May-20, Volume: 96, Issue:10

    Topics: Air; Alanine; Amino Acid Sequence; Anesthetics, General; Buffers; Circular Dichroism; Detergents; Fluorescent Dyes; Halothane; Ion Channels; Molecular Sequence Data; Nitriles; Peptides; Protein Binding; Protein Structure, Secondary; Spectrometry, Fluorescence; Spectrophotometry, Infrared; Surface Properties; Vibration; Water; X-Rays

2009
Mechanism of interaction between the general anesthetic halothane and a model ion channel protein, III: Molecular dynamics simulation incorporating a cyanophenylalanine spectroscopic probe.
    Biophysical journal, 2009, May-20, Volume: 96, Issue:10

    Topics: Alanine; Anesthetics, General; Fluorescent Dyes; Halothane; Hydrogen; Ion Channels; Models, Molecular; Molecular Conformation; Movement; Mutation; Nitriles; Protein Binding; Spectrophotometry, Infrared; Vibration

2009
Interpretation of p-cyanophenylalanine fluorescence in proteins in terms of solvent exposure and contribution of side-chain quenchers: a combined fluorescence, IR and molecular dynamics study.
    Biochemistry, 2009, Sep-29, Volume: 48, Issue:38

    Topics: Alanine; Amino Acid Sequence; Amino Acid Substitution; Fluorescence; Fluorescence Resonance Energy Transfer; Hydrogen Bonding; Models, Molecular; Molecular Sequence Data; Mutagenesis, Site-Directed; Nitriles; Protein Structure, Tertiary; Recombinant Proteins; Ribosomal Proteins; Solvents; Spectrometry, Fluorescence; Spectroscopy, Fourier Transform Infrared; Thermodynamics

2009
Differential effects of Phe19 and Phe20 on fibril formation by amyloidogenic peptide A beta 16-22 (Ac-KLVFFAE-NH2).
    Proteins, 2010, Aug-01, Volume: 78, Issue:10

    Topics: Alanine; Amino Acid Substitution; Amyloid; Amyloid beta-Peptides; Crystallography, X-Ray; Freeze Drying; Humans; Hydrophobic and Hydrophilic Interactions; Models, Molecular; Molecular Dynamics Simulation; Nerve Tissue Proteins; Nitriles; Oligopeptides; Peptide Fragments; Phenylalanine; Powder Diffraction; Protein Conformation; Protein Folding; Protein Structure, Secondary; Solubility; Spectrophotometry, Infrared; Surface Properties

2010
Modulation of p-cyanophenylalanine fluorescence by amino acid side chains and rational design of fluorescence probes of alpha-helix formation.
    Biochemistry, 2010, Jul-27, Volume: 49, Issue:29

    Topics: Alanine; Amino Acids; Fluorescence; Fluorescent Dyes; Hydrogen Bonding; Hydroxides; Imidazoles; Nitriles; Peptides; Protein Folding; Protein Structure, Secondary

2010
Residue-specific, real-time characterization of lag-phase species and fibril growth during amyloid formation: a combined fluorescence and IR study of p-cyanophenylalanine analogs of islet amyloid polypeptide.
    Journal of molecular biology, 2010, Jul-23, Volume: 400, Issue:4

    Topics: Alanine; Amino Acid Sequence; Amino Acid Substitution; Amyloid; Fluorescence; Humans; Islet Amyloid Polypeptide; Kinetics; Microscopy, Electron, Transmission; Molecular Sequence Data; Nitriles; Spectrometry, Fluorescence; Spectrophotometry, Infrared; Staining and Labeling

2010
An evolved aminoacyl-tRNA synthetase with atypical polysubstrate specificity.
    Biochemistry, 2011, Mar-22, Volume: 50, Issue:11

    Topics: Alanine; Amino Acyl-tRNA Synthetases; Binding Sites; Crystallography, X-Ray; Escherichia coli; Models, Molecular; Nitriles; Protein Conformation; RNA, Transfer; Substrate Specificity

2011
High-yield cell-free protein synthesis for site-specific incorporation of unnatural amino acids at two sites.
    Biochemical and biophysical research communications, 2012, Feb-24, Volume: 418, Issue:4

    Topics: Alanine; Amino Acyl-tRNA Synthetases; Cell-Free System; Codon, Nonsense; Escherichia coli; Genetic Engineering; Methanococcus; Nitriles; Phenylalanine; Protein Biosynthesis; RNA, Transfer; Suppression, Genetic

2012
Ribonuclease S dynamics measured using a nitrile label with 2D IR vibrational echo spectroscopy.
    The journal of physical chemistry. B, 2012, Apr-05, Volume: 116, Issue:13

    Topics: Alanine; Models, Molecular; Molecular Dynamics Simulation; Nitriles; Ribonucleases; Spectrophotometry, Infrared; Staining and Labeling

2012
Native state conformational heterogeneity of HP35 revealed by time-resolved FRET.
    The journal of physical chemistry. B, 2012, Sep-06, Volume: 116, Issue:35

    Topics: Alanine; Fluorescence Resonance Energy Transfer; Kinetics; Microfilament Proteins; Nitriles; Protein Folding; Protein Structure, Tertiary; Tryptophan

2012
Study protein folding and aggregation using nonnatural amino acid p-cyanophenylalanine as a sensitive optical probe.
    Methods in molecular biology (Clifton, N.J.), 2013, Volume: 1081

    Topics: Alanine; Amino Acids; Amyloid beta-Peptides; Kinetics; Nitriles; Peptides; Protein Binding; Protein Folding; Spectrometry, Fluorescence

2013
Proton-bound 3-cyanophenylalanine trimethylamine clusters: isomer-specific fragmentation pathways and evidence of gas-phase zwitterions.
    The journal of physical chemistry. A, 2013, Oct-17, Volume: 117, Issue:41

    Topics: Alanine; Computer Simulation; Gases; Infrared Rays; Ions; Isomerism; Methylamines; Models, Molecular; Nitriles; Phase Transition; Protons

2013
New aspects of the structure and mode of action of the human cathelicidin LL-37 revealed by the intrinsic probe p-cyanophenylalanine.
    The Biochemical journal, 2015, Feb-01, Volume: 465, Issue:3

    Topics: Alanine; Amino Acid Sequence; Animals; Antimicrobial Cationic Peptides; Cathelicidins; Cattle; Chickens; Fluorescent Dyes; Humans; Macaca; Molecular Sequence Data; Nitriles; Protein Conformation

2015
Measurement of the membrane dipole electric field in DMPC vesicles using vibrational shifts of p-cyanophenylalanine and molecular dynamics simulations.
    The journal of physical chemistry. B, 2015, Feb-19, Volume: 119, Issue:7

    Topics: Alanine; Circular Dichroism; Dimyristoylphosphatidylcholine; Lipid Bilayers; Molecular Dynamics Simulation; Nitriles; Protein Structure, Secondary; Spectrum Analysis; Static Electricity; Unilamellar Liposomes; Vibration

2015
Orthogonal translation meets electron transfer: in vivo labeling of cytochrome c for probing local electric fields.
    Chembiochem : a European journal of chemical biology, 2015, Mar-23, Volume: 16, Issue:5

    Topics: Alanine; Cytochromes c; Electron Transport; Models, Molecular; Nitriles; Static Electricity

2015
p-Cyanophenylalanine and selenomethionine constitute a useful fluorophore-quencher pair for short distance measurements: application to polyproline peptides.
    Physical chemistry chemical physics : PCCP, 2015, Mar-28, Volume: 17, Issue:12

    Topics: Alanine; Fluorescent Dyes; Kinetics; Molecular Dynamics Simulation; Nitriles; Peptides; Protein Conformation; Selenomethionine; Spectrometry, Fluorescence

2015
Site-specific dynamics of amyloid formation and fibrillar configuration of Aβ(1-23) using an unnatural amino acid.
    Chemical communications (Cambridge, England), 2015, Apr-25, Volume: 51, Issue:32

    Topics: Alanine; Amino Acid Sequence; Amyloid beta-Peptides; Models, Molecular; Molecular Sequence Data; Nitriles; Protein Structure, Secondary

2015
Sensing pH via p-cyanophenylalanine fluorescence: Application to determine peptide pKa and membrane penetration kinetics.
    Analytical biochemistry, 2015, Aug-15, Volume: 483

    Topics: Alanine; Amines; Cell Membrane; Cell-Penetrating Peptides; Hydrogen-Ion Concentration; Kinetics; Nitriles; Spectrometry, Fluorescence

2015
The fluorescence and infrared absorption probe para-cyanophenylalanine: Effect of labeling on the behavior of different membrane-interacting peptides.
    Biopolymers, 2015, Volume: 104, Issue:5

    Topics: Alamethicin; Alanine; Fluorescent Dyes; Membranes; Nitriles; Peptides; Phospholipids; Spectroscopy, Fourier Transform Infrared

2015
Selenomethionine, p-cyanophenylalanine pairs provide a convenient, sensitive, non-perturbing fluorescent probe of local helical structure.
    Chemical communications (Cambridge, England), 2016, Feb-04, Volume: 52, Issue:10

    Topics: Alanine; Fluorescent Dyes; Hydrogen Bonding; Molecular Dynamics Simulation; Nitriles; Peptides; Protein Structure, Secondary; Selenomethionine; Spectrometry, Fluorescence

2016
Site-Specific Characterization of Cytochrome P450cam Conformations by Infrared Spectroscopy.
    Analytical chemistry, 2016, 06-21, Volume: 88, Issue:12

    Topics: Alanine; Camphor; Camphor 5-Monooxygenase; Molecular Dynamics Simulation; Nitriles; Protein Binding; Protein Conformation; Pseudomonas putida; Spectroscopy, Fourier Transform Infrared

2016
A Non-perturbing Probe of Coiled Coil Formation Based on Electron Transfer Mediated Fluorescence Quenching.
    Biochemistry, 2016, 07-05, Volume: 55, Issue:26

    Topics: Alanine; Circular Dichroism; Electron Transport; Electrons; Fluorescence; Models, Molecular; Nitriles; Protein Structure, Secondary; Selenomethionine; Spectrometry, Fluorescence; Thermodynamics

2016
Do guanidinium and tetrapropylammonium ions specifically interact with aromatic amino acid side chains?
    Proceedings of the National Academy of Sciences of the United States of America, 2017, 01-31, Volume: 114, Issue:5

    Topics: Alanine; Amino Acids, Aromatic; Antimicrobial Cationic Peptides; Circular Dichroism; Guanidine; Hydrophobic and Hydrophilic Interactions; Nitriles; Peptides; Protein Denaturation; Protein Stability; Protein Structure, Secondary; Quaternary Ammonium Compounds; Solvents; Spectrometry, Fluorescence; Spectrophotometry, Infrared; Spectroscopy, Fourier Transform Infrared

2017
Extended timescale 2D IR probes of proteins: p-cyanoselenophenylalanine.
    Physical chemistry chemical physics : PCCP, 2017, Apr-12, Volume: 19, Issue:15

    Topics: Alanine; Fluorescent Dyes; Nitriles; Proteins; Spectrophotometry, Infrared; Spectroscopy, Fourier Transform Infrared; Water

2017
Crystal structures of green fluorescent protein with the unnatural amino acid 4-nitro-L-phenylalanine.
    Acta crystallographica. Section F, Structural biology communications, 2018, Oct-01, Volume: 74, Issue:Pt 10

    Topics: Alanine; Amino Acid Sequence; Amino Acid Substitution; Asparagine; Aspartic Acid; Binding Sites; Cloning, Molecular; Crystallography, X-Ray; Escherichia coli; Gene Expression; Genes, Reporter; Genetic Vectors; Green Fluorescent Proteins; Models, Molecular; Mutagenesis, Site-Directed; Nitriles; Phenylalanine; Protein Binding; Protein Conformation, alpha-Helical; Protein Conformation, beta-Strand; Protein Engineering; Protein Interaction Domains and Motifs; Recombinant Proteins; Structural Homology, Protein

2018
Heterogeneous and Highly Dynamic Interface in Plastocyanin-Cytochrome f Complex Revealed by Site-Specific 2D-IR Spectroscopy.
    The journal of physical chemistry. B, 2019, 03-07, Volume: 123, Issue:9

    Topics: Alanine; Binding Sites; Cytochromes f; Hydrophobic and Hydrophilic Interactions; Molecular Probes; Nitriles; Nostoc; Plastocyanin; Protein Binding; Spectroscopy, Fourier Transform Infrared

2019
Local Electric Field Changes during the Photoconversion of the Bathy Phytochrome Agp2.
    Biochemistry, 2021, 10-12, Volume: 60, Issue:40

    Topics: Agrobacterium; Alanine; Bacterial Proteins; Binding Sites; Light; Molecular Dynamics Simulation; Mutation; Nitriles; Phytochrome; Protein Conformation; Static Electricity; Stereoisomerism; Tetrapyrroles

2021