5-hydroxymethylcytosine has been researched along with sulfites in 46 studies
Timeframe | Studies, this research(%) | All Research% |
---|---|---|
pre-1990 | 1 (2.17) | 18.7374 |
1990's | 0 (0.00) | 18.2507 |
2000's | 0 (0.00) | 29.6817 |
2010's | 36 (78.26) | 24.3611 |
2020's | 9 (19.57) | 2.80 |
Authors | Studies |
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Hayatsu, H; Shiragami, M | 1 |
Huang, Y; Liu, DR; Pastor, WA; Rao, A; Shen, Y; Tahiliani, M | 1 |
Jin, SG; Kadam, S; Pfeifer, GP | 1 |
Dunican, D; Meehan, R; Nestor, C; Ruzov, A | 1 |
Iqbal, K; Jin, SG; Pfeifer, GP; Szabó, PE | 1 |
Acevedo, LG; Jelinek, MA; Sanz, A | 1 |
Balasubramanian, S; Booth, MJ; Branco, MR; Ficz, G; Krueger, F; Oxley, D; Reik, W | 1 |
Miller, AK; Schüler, P | 1 |
Huang, Y; Pastor, WA; Rao, A; Zepeda-Martínez, JA | 1 |
He, C; Hon, GC; Jin, P; Ren, B; Song, CX; Szulwach, KE; Yu, M | 1 |
Bollig-Fischer, A; Cao, X; Chen, CC; Cingolani, P; Coon, M; Garfinkel, MD; Huang, Y; Hudson, ME; Khetani, RS; Land, S; Robinson, GE; Ruden, DM; Sammak, A; Zhong, S | 1 |
Hahn, MA; Li, AX; Pfeifer, GP; Wu, X | 1 |
Bachman, M; Balasubramanian, S; Beck, S; Beraldi, D; Field, SF; Stewart, SK | 1 |
Burgess, D; Eichten, SR; Greally, JM; Green, D; Hermanson, PJ; Jeddeloh, J; Li, Q; Patterson, N; Richmond, T; Rosenbaum, H; Springer, NM; Suzuki, M; Wendt, J | 1 |
Han, D; He, C; Jiang, X; Liu, M; Lu, X; Sun, Z; Xia, B; Xie, W; Yi, C; Yin, Q; Zeng, H; Zhou, A | 1 |
Fukuzawa, S; Suetake, I; Tachibana, K; Tajima, S | 1 |
Al-Sarraj, S; Burrage, J; Dempster, E; Hannon, E; Kepa, A; Lunnon, K; Mill, J; Schalkwyk, L; Smith, RG; Troakes, C; Wong, C | 1 |
Bianchessi, V; Capogrossi, MC; Farina, F; Gualdi, V; Lauri, A; Nigro, P; Pompilio, G; Rizzi, V; Vinci, MC | 1 |
Axelsson, T; Barragan, I; Ewels, P; Ingelman-Sundberg, M; Ivanov, M; Käller, M; Kals, M; Lauschke, V; Lehtiö, J; Milani, L | 1 |
Kisliouk, T; Marco, A; Meiri, N; Tabachnik, T; Weller, A | 1 |
Ficz, G; Giehr, P; Kyriakopoulos, C; Walter, J; Wolf, V | 1 |
Incarnato, D; Krepelova, A; Neri, F; Oliviero, S; Parlato, C | 1 |
Fukuzawa, S; Suetake, I; Tachibana, K; Tajima, S; Takahashi, S | 1 |
Aburatani, H; Hayashi, G; Kamio, A; Koyama, K; Nagae, G; Okamoto, A; Shiota, H; Umeda, T | 1 |
Bourret, G; Bramoulle, A; Chen, GG; Ehlert, U; Ernst, C; Gardini, ES; Gross, JA; Lepage, P; Lutz, PE; Masurel, A; Maussion, G; Mechawar, N; Théroux, JF; Turecki, G; Vaillancourt, K | 1 |
Clark, SJ; Gould, CM; Luu, PL; Nair, SS; Skvortsova, K; Stirzaker, C; Zotenko, E | 1 |
Moran, S | 1 |
Han, D; He, C; Hon, GC; Yu, M | 1 |
Chandra, T; Green, AR; Kirschner, K; Krueger, F | 1 |
Amrutkar, SM; Shao, F; Wu, Q | 1 |
Giehr, P; Kyriakopoulos, C; Lepikhov, K; Wallner, S; Walter, J; Wolf, V | 1 |
Chung, TH; Jia, XY; Sun, X; Tan, D | 1 |
Edwards, JR; Gabel, HW; Schlosberg, CE; Wu, DY | 1 |
Bai, C; Bi, Y; Chen, L; Liu, Y; Schuster-Böckler, B; Siejka-Zielińska, P; Song, CX; Tomkova, M; Velikova, G; Yuan, F | 1 |
Tang, L | 1 |
Benner, A; Slynko, A | 1 |
Kriegel, AJ; Liang, M; Liu, Y | 1 |
Gibas, P; Gordevičius, J; Klimašauskas, S; Kriukienė, E; Narmontė, M; Staševskij, Z | 1 |
Huang, Z; Kohli, RM; Meng, Y; Pfeifer, GP; Szabó, PE | 1 |
Branco, MR; De Borre, M | 1 |
Berrios, KN; Kohli, RM; Luo, M; Schutsky, EK; Wang, T; Wu, H | 1 |
Ahmed, AA; Chen, J; Cheng, J; Hu, Z; Inoue, M; Liu, Y; Siejka-Zielińska, P; Song, CX | 1 |
Eden, HE; Huang, Z; Robertson, KD; Rothbart, SB; Tiedemann, RL | 1 |
Kiihl, SF | 1 |
Bogdanovic, O; Skvortsova, K | 1 |
Xu, X; Zeisberg, EM | 1 |
2 review(s) available for 5-hydroxymethylcytosine and sulfites
Article | Year |
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Novel DNA binding domain-based assays for detection of methylated and nonmethylated DNA.
Topics: 5-Methylcytosine; Biomarkers; CpG Islands; Cytosine; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Primers; Humans; Immunoprecipitation; Polymerase Chain Reaction; Protein Interaction Domains and Motifs; Sensitivity and Specificity; Sulfites | 2011 |
Technologies for Deciphering Epigenomic DNA Patterns.
Topics: 5-Methylcytosine; CpG Islands; Cytosine; DNA Methylation; Epigenomics; Formaldehyde; Humans; Microarray Analysis; Paraffin Embedding; Sulfites; Tissue Fixation; Uracil | 2017 |
44 other study(ies) available for 5-hydroxymethylcytosine and sulfites
Article | Year |
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Reaction of bisulfite with the 5-hydroxymethyl group in pyrimidines and in phage DNAs.
Topics: 5-Methylcytosine; Chemical Phenomena; Chemistry; Coliphages; Cytosine; DNA, Viral; Pentoxyl; Pyrimidines; Spectrophotometry, Ultraviolet; Sulfites; Uracil | 1979 |
The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing.
Topics: 5-Methylcytosine; Base Sequence; Chromatography, Liquid; Cytosine; Mass Spectrometry; Molecular Sequence Data; Polymerase Chain Reaction; Sulfites | 2010 |
Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine.
Topics: 5-Methylcytosine; Antibodies; Cytosine; DNA; DNA Methylation; DNA-Binding Proteins; Electrophoretic Mobility Shift Assay; Immunoprecipitation; Oligonucleotides; Sequence Analysis, DNA; Sulfites | 2010 |
Enzymatic approaches and bisulfite sequencing cannot distinguish between 5-methylcytosine and 5-hydroxymethylcytosine in DNA.
Topics: 5-Methylcytosine; CpG Islands; Cytosine; DNA; DNA Methylation; DNA Restriction Enzymes; Genes, BRCA1; Humans; Octamer Transcription Factor-3; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites | 2010 |
Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine.
Topics: 5-Methylcytosine; Animals; Cellular Reprogramming; Chromosomal Proteins, Non-Histone; Cleavage Stage, Ovum; Cytosine; DNA-Binding Proteins; Embryo, Mammalian; Female; Fertilization; Gene Expression Regulation, Developmental; Genome; Male; Mice; Oocytes; Oxidation-Reduction; Repressor Proteins; Sequence Analysis, DNA; Sulfites; Zygote | 2011 |
Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution.
Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; DNA; DNA Methylation; Embryonic Stem Cells; Epigenesis, Genetic; Genes, Intracisternal A-Particle; High-Throughput Nucleotide Sequencing; Long Interspersed Nucleotide Elements; Mice; Oxidation-Reduction; Rhenium; Sequence Analysis, DNA; Sulfites; Transcription, Genetic; Uracil | 2012 |
Sequencing the sixth base (5-hydroxymethylcytosine): selective DNA oxidation enables base-pair resolution.
Topics: 5-Methylcytosine; Base Pairing; Cytosine; Deamination; DNA; Oxidation-Reduction; Sequence Analysis, DNA; Sulfites | 2012 |
The anti-CMS technique for genome-wide mapping of 5-hydroxymethylcytosine.
Topics: 5-Methylcytosine; Antibodies; Base Sequence; Cytosine; DNA Primers; Genomics; Immunoprecipitation; Molecular Sequence Data; Sulfites | 2012 |
Tet-assisted bisulfite sequencing of 5-hydroxymethylcytosine.
Topics: 5-Methylcytosine; Animals; Chromatography, High Pressure Liquid; Cytosine; DNA-Binding Proteins; Glucosyltransferases; Mice; Polymerase Chain Reaction; Proto-Oncogene Proteins; Sequence Analysis, DNA; Sulfites | 2012 |
Intronic non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees.
Topics: 5-Methylcytosine; Africa; Alternative Splicing; Animals; Bees; Behavior, Animal; CpG Islands; Cytosine; DNA Methylation; Europe; Exons; Gene Expression Regulation; Genes, Insect; Honey; Introns; Reproducibility of Results; RNA Splice Sites; RNA, Messenger; Sequence Analysis, DNA; Sulfites | 2013 |
Single base resolution analysis of 5-methylcytosine and 5-hydroxymethylcytosine by RRBS and TAB-RRBS.
Topics: 5-Methylcytosine; Cytosine; Deoxyribonuclease HpaII; Glycosylation; Humans; Oxidation-Reduction; Sequence Analysis, DNA; Sulfites | 2015 |
Accurate measurement of 5-methylcytosine and 5-hydroxymethylcytosine in human cerebellum DNA by oxidative bisulfite on an array (OxBS-array).
Topics: 5-Methylcytosine; Adult; Cerebellum; Cytosine; DNA; DNA Methylation; Humans; Male; Oligonucleotide Array Sequence Analysis; Oxidation-Reduction; Reproducibility of Results; Sulfites | 2015 |
Post-conversion targeted capture of modified cytosines in mammalian and plant genomes.
Topics: 5-Methylcytosine; Alleles; Animals; Cell Line; Cytosine; DNA Methylation; Genome, Plant; Genomics; High-Throughput Nucleotide Sequencing; Humans; Mice; Polymorphism, Single Nucleotide; Sequence Analysis, DNA; Sulfites | 2015 |
Bisulfite-free, base-resolution analysis of 5-formylcytosine at the genome scale.
Topics: 5-Methylcytosine; Animals; Cell Line; CpG Islands; Cytosine; DNA Methylation; DNA Primers; Epigenomics; Gene Expression Regulation; Genome; Mice; Mice, Transgenic; Oligonucleotides; Oxygen; Polymerase Chain Reaction; Sequence Analysis, DNA; Stem Cells; Sulfites | 2015 |
Selective oxidation of 5-hydroxymethylcytosine with micelle incarcerated oxidants to determine it at single base resolution.
Topics: 5-Methylcytosine; Base Sequence; Catalysis; Cytosine; Mass Spectrometry; Micelles; Oxidation-Reduction; Sulfites | 2015 |
Variation in 5-hydroxymethylcytosine across human cortex and cerebellum.
Topics: 5-Methylcytosine; Cerebellar Cortex; Cerebellum; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Genome, Human; Humans; Sequence Analysis, DNA; Sulfites | 2016 |
Methylation profiling by bisulfite sequencing analysis of the mtDNA Non-Coding Region in replicative and senescent Endothelial Cells.
Topics: 5-Methylcytosine; Cytosine; DNA, Intergenic; DNA, Mitochondrial; Endothelial Cells; Humans; Mitochondria; Sequence Analysis, DNA; Sulfites | 2016 |
Single base resolution analysis of 5-hydroxymethylcytosine in 188 human genes: implications for hepatic gene expression.
Topics: 5-Methylcytosine; Adult; Base Pairing; Base Sequence; Chromatography, Liquid; CpG Islands; DNA; Gene Expression Regulation; Genes; Humans; Liver; Mass Spectrometry; Reproducibility of Results; Sequence Analysis, DNA; Sulfites | 2016 |
DNA CpG Methylation (5-Methylcytosine) and Its Derivative (5-Hydroxymethylcytosine) Alter Histone Posttranslational Modifications at the Pomc Promoter, Affecting the Impact of Perinatal Diet on Leanness and Obesity of the Offspring.
Topics: 5-Methylcytosine; Animals; Brain; CpG Islands; Diet, High-Fat; DNA Methylation; Histones; Hypothalamus; Obesity; Pro-Opiomelanocortin; Promoter Regions, Genetic; Rats; Rats, Wistar; Sulfites; Thinness | 2016 |
The Influence of Hydroxylation on Maintaining CpG Methylation Patterns: A Hidden Markov Model Approach.
Topics: 5-Methylcytosine; Animals; Cell Division; Computational Biology; CpG Islands; DNA Methylation; DNA Replication; Embryonic Stem Cells; Hydroxylation; Markov Chains; Mice; Models, Biological; Stochastic Processes; Sulfites | 2016 |
Methylation-assisted bisulfite sequencing to simultaneously map 5fC and 5caC on a genome-wide scale for DNA demethylation analysis.
Topics: 5-Methylcytosine; Animals; Base Sequence; Cell Line; CpG Islands; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Humans; Mice; Sequence Analysis, DNA; Sulfites | 2016 |
Simple and accurate single base resolution analysis of 5-hydroxymethylcytosine by catalytic oxidative bisulfite sequencing using micelle incarcerated oxidants.
Topics: 5-Methylcytosine; Adamantane; Animals; Cyclic N-Oxides; Cytosine; DNA, Single-Stranded; Embryonic Stem Cells; Iodobenzenes; Mice; Micelles; Onium Compounds; Oxidants; Oxidation-Reduction; Sequence Analysis, DNA; Sodium Dodecyl Sulfate; Sulfites; Temperature | 2016 |
Base-Resolution Analysis of 5-Hydroxymethylcytosine by One-Pot Bisulfite-Free Chemical Conversion with Peroxotungstate.
Topics: 5-Methylcytosine; Base Pairing; Base Sequence; DNA; Selenium Radioisotopes; Sulfites; Tungsten Compounds | 2016 |
Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine.
Topics: 5-Methylcytosine; Adult; DNA Methylation; Humans; Male; Oxidation-Reduction; Sequence Analysis, DNA; Sulfites | 2017 |
Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA.
Topics: 5-Methylcytosine; Brain; Cell Line, Tumor; CpG Islands; DNA; DNA Methylation; Gene Expression Profiling; Genome, Human; Humans; Immunoprecipitation; Mixed Function Oxygenases; Oligonucleotide Array Sequence Analysis; Oxidation-Reduction; Proto-Oncogene Proteins; Sequence Analysis, DNA; Sulfites; Whole Genome Sequencing | 2017 |
Tet-Assisted Bisulfite Sequencing (TAB-seq).
Topics: 5-Methylcytosine; Animals; Cells, Cultured; DNA-Binding Proteins; Epigenomics; Glucosyltransferases; Humans; Mice; Proto-Oncogene Proteins; Recombinant Proteins; Sequence Analysis, DNA; Sulfites | 2018 |
Multiplexing for Oxidative Bisulfite Sequencing (oxBS-seq).
Topics: 5-Methylcytosine; DNA Methylation; Genomic Library; Humans; Organ Specificity; Sequence Analysis, DNA; Sulfites; Workflow | 2018 |
Sulfinate Based Selective Labeling of 5-Hydroxymethylcytosine: Application to Biotin Pull Down Assay.
Topics: 5-Methylcytosine; Biotin; Biotinylation; DNA; Sulfinic Acids; Sulfites | 2018 |
Two are better than one: HPoxBS - hairpin oxidative bisulfite sequencing.
Topics: 5-Methylcytosine; Animals; Cytosine; DNA; DNA (Cytosine-5-)-Methyltransferase 1; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Regulation; High-Throughput Nucleotide Sequencing; Mice; Oxidation-Reduction; Proto-Oncogene Proteins; Sulfites | 2018 |
Mirror Bisulfite Sequencing: A Method for Single-Base Resolution of Hydroxymethylcytosine.
Topics: 5-Methylcytosine; Base Sequence; DNA; DNA-Cytosine Methylases; Gene Library; Glucosyltransferases; Humans; Reproducibility of Results; Sensitivity and Specificity; Sequence Analysis, DNA; Sulfites | 2018 |
ME-Class2 reveals context dependent regulatory roles for 5-hydroxymethylcytosine.
Topics: 5-Methylcytosine; Animals; Brain; Databases, Genetic; Datasets as Topic; Genes; Genome; Humans; Machine Learning; Methylation; Mice; Organ Specificity; Promoter Regions, Genetic; Sequence Analysis, RNA; Sulfites | 2019 |
Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution.
Topics: 5-Methylcytosine; Animals; Base Sequence; Biotechnology; CpG Islands; DNA; DNA Methylation; Humans; Mice; Sequence Analysis, DNA; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Sulfites; Whole Genome Sequencing | 2019 |
Bisulfite-free epigenetic sequencing.
Topics: 5-Methylcytosine; Sequence Analysis, DNA; Sulfites | 2019 |
Statistical methods for classification of 5hmC levels based on the Illumina Inifinium HumanMethylation450 (450k) array data, under the paired bisulfite (BS) and oxidative bisulfite (oxBS) treatment.
Topics: 5-Methylcytosine; Case-Control Studies; DNA Methylation; Humans; Neoplasms; Oxidation-Reduction; Sulfites | 2019 |
Library Preparation for Multiplexed Reduced Representation Bisulfite Sequencing with a Universal Adapter.
Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; DNA Methylation; DNA Primers; Gene Library; Rats; Sequence Analysis, DNA; Sulfites | 2019 |
Precise genomic mapping of 5-hydroxymethylcytosine via covalent tether-directed sequencing.
Topics: 5-Methylcytosine; Acetylation; Animals; Bacteriophage lambda; Cell Line; DNA Methylation; Embryonic Stem Cells; Genome; Histones; Lysine; Mice; Oligonucleotides; Reproducibility of Results; Sequence Analysis, DNA; Sulfites | 2020 |
High-Resolution Analysis of 5-Hydroxymethylcytosine by TET-Assisted Bisulfite Sequencing.
Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA; DNA Methylation; Epigenesis, Genetic; Epigenomics; Genome; Humans; Oxidation-Reduction; Sequence Analysis, DNA; Sulfites | 2021 |
Oxidative Bisulfite Sequencing: An Experimental and Computational Protocol.
Topics: 5-Methylcytosine; Animals; Computational Biology; Cytosine; Dioxygenases; DNA; DNA Methylation; High-Throughput Nucleotide Sequencing; Humans; Oxidation-Reduction; Oxidative Stress; Sequence Analysis, DNA; Sulfites | 2021 |
Bisulfite-Free Sequencing of 5-Hydroxymethylcytosine with APOBEC-Coupled Epigenetic Sequencing (ACE-Seq).
Topics: 5-Methylcytosine; Animals; Computational Biology; Cytidine Deaminase; Cytosine; DNA; DNA Methylation; Epigenomics; Humans; Proteins; Sequence Analysis, DNA; Single Molecule Imaging; Sulfites | 2021 |
Subtraction-free and bisulfite-free specific sequencing of 5-methylcytosine and its oxidized derivatives at base resolution.
Topics: 5-Methylcytosine; Animals; Base Sequence; Mice; Mouse Embryonic Stem Cells; Oxidation-Reduction; Pyridines; Sequence Analysis, DNA; Sulfites | 2021 |
Distinguishing Active Versus Passive DNA Demethylation Using Illumina MethylationEPIC BeadChip Microarrays.
Topics: 5-Methylcytosine; Computational Biology; Cytosine; DNA; DNA Demethylation; DNA Methylation; Epigenesis, Genetic; High-Throughput Nucleotide Sequencing; Humans; Microarray Analysis; Oxidation-Reduction; Sulfites | 2021 |
Bioinformatic Estimation of DNA Methylation and Hydroxymethylation Proportions.
Topics: 5-Methylcytosine; Computational Biology; DNA; DNA Methylation; Epigenesis, Genetic; High-Throughput Nucleotide Sequencing; Humans; Oxidation-Reduction; Sulfites | 2021 |
TAB-seq and ACE-seq Data Processing for Genome-Wide DNA hydroxymethylation Profiling.
Topics: 5-Methylcytosine; Computational Biology; DNA; DNA Methylation; Epigenesis, Genetic; Genome, Human; High-Throughput Nucleotide Sequencing; Humans; Mixed Function Oxygenases; Oxidation-Reduction; Proto-Oncogene Proteins; Sulfites | 2021 |
High-Fidelity CRISPR/Cas9-Based Gene-Specific Hydroxymethylation.
Topics: 5-Methylcytosine; Chromatin; Computational Biology; CRISPR-Cas Systems; DNA; DNA Methylation; Epigenesis, Genetic; Gene Editing; High-Throughput Nucleotide Sequencing; Humans; Mixed Function Oxygenases; Oxidation-Reduction; Promoter Regions, Genetic; Proto-Oncogene Proteins; Sulfites | 2021 |