Page last updated: 2024-08-25

5-hydroxymethylcytosine and 5-methylcytosine

5-hydroxymethylcytosine has been researched along with 5-methylcytosine in 1091 studies

Research

Studies (1,091)

TimeframeStudies, this research(%)All Research%
pre-199014 (1.28)18.7374
1990's4 (0.37)18.2507
2000's7 (0.64)29.6817
2010's862 (79.01)24.3611
2020's204 (18.70)2.80

Authors

AuthorsStudies
Hayatsu, H; Shiragami, M1
Childs, JD; Gentner, NE; Paterson, MC; Smith, BP1
Cambell, JL; Fleischman, RA; Richardson, CC1
Khomov, IS; Tikhonenko, TI1
Annan, RS; Giese, RW; Kresbach, GM; Vouros, P1
Cannon, SV; Cummings, A; Teebor, GW1
Macdonald, PM; Mosig, G1
Childs, JD; Ellison, MJ; Pilon, R1
Goldberg, EB; Levy, JN1
Pearson, RE; Snyder, L1
Warren, RA1
Hong, H; Janosi, L; Kaji, A; Yonemitsu, H1
Cohen, SS1
Castro, GD; Castro, JA; Díaz Gómez, MI1
Fujimoto, J; Lin, SS; Sowers, LC; Tardy-Planechaud, S1
CHASE, M; DIXON, J; HERSHEY, AD1
COHEN, SS; WYATT, GR1
COHEN, SS; WEED, LL1
Larivière, L; Moréra, S1
Bird, A; Burdzy, A; Rogstad, DK; Sowers, LC; Tsai, HH; Valinluck, V1
Bair, CL; Black, LW1
Bair, CL; Black, LW; Rifat, D1
Deng, Z; He, X; Li, L; Wu, J; Xu, X; Xu, Z; Zabriskie, TM; Zhang, Y1
Agarwal, S; Aravind, L; Bandukwala, H; Brudno, Y; Iyer, LM; Koh, KP; Liu, DR; Pastor, WA; Rao, A; Shen, Y; Tahiliani, M1
Heintz, N; Kriaucionis, S1
Hemberger, M1
Huang, Y; Liu, DR; Pastor, WA; Rao, A; Shen, Y; Tahiliani, M1
Jin, SG; Kadam, S; Pfeifer, GP1
Dunican, D; Meehan, R; Nestor, C; Ruzov, A1
Biel, M; Brückl, T; Carell, T; Globisch, D; Michalakis, S; Müller, M; Münzel, M; Wagner, M; Welzmiller, V1
D'Alessio, AC; Hong, K; Ito, S; Sowers, LC; Taranova, OV; Zhang, Y1
Bultmann, S; Leonhardt, H; Schmidt, CS; Spada, F; Szwagierczak, A1
Carell, T; Lercher, L; Müller, M; Münzel, M1
Bayley, H; Donohoe, TJ; Heron, AJ; Maglia, G; Mikhailova, E; Stoddart, D; Wallace, EV1
Larson, GP; Lee, DH; Oates, N; Pfeifer, GP; Rivas, GE; Singh, P; Szabó, PE; Tran, DA1
Carell, T; Globisch, D; Münzel, M; Trindler, C1
Chen, CH; Dai, Q; Fu, Y; Godley, LA; He, C; Hicks, LM; Jian, X; Jin, P; Lahn, BT; Li, X; Li, Y; Looney, TJ; Song, CX; Szulwach, KE; Wang, J; Yi, C; Zhang, B; Zhang, L; Zhang, W1
Benner, J; Cohen-Karni, D; Drndic, M; Fields, L; Johnson, RR; Klein, ML; Peterman, N; Wanunu, M; Zheng, Y1
Biel, M; Brückl, T; Carell, T; Globisch, D; Koch, S; Michalakis, S; Müller, M; Münzel, M; Wagner, M1
Frye, S; Guan, KL; Ito, S; Jiang, WQ; Kim, SH; Lei, QY; Liu, J; Liu, LX; Liu, Y; Wang, B; Wang, P; Xiao, MT; Xiong, Y; Xu, W; Xu, YH; Yang, C; Yang, H; Yang, Y; Zhang, JY; Zhang, Y; Zhao, SM1
Fan, G; Faull, KF; Kim, KP; Le, T1
Cunniff, K; Daley, GQ; Huang, Y; Koh, KP; Lahesmaa, R; Laiho, A; Mostoslavsky, G; Nardone, J; Orkin, SH; Rao, A; Rao, S; Rodig, SJ; Sommer, CA; Tahiliani, M; Yabuuchi, A1
Dahl, JA; Klungland, A; Krokan, HE; Robertson, AB; Tripathi, P; Vågbø, CB1
Davis, T; Vaisvila, R1
Moran, RG; Peterson, EJ; Shock, LS; Taylor, SM; Thakkar, PV1
Iqbal, K; Jin, SG; Pfeifer, GP; Szabó, PE1
Dahl, C; Grønbæk, K; Guldberg, P1
Grigaitytė, I; Klimašauskas, S; Kriukienė, E; Liutkevičiūtė, Z; Masevičius, V1
Brachmann, A; Bultmann, S; Leonhardt, H; Schmidt, CS; Spada, F; Szwagierczak, A1
Jin, SG; Li, AX; Pfeifer, GP; Wu, X1
Arand, J; Boiani, M; Lepikhov, K; Marques, CJ; Nakamura, T; Nakano, T; Reik, W; Walter, J; Wossidlo, M; Zakhartchenko, V1
Cui, K; D'Alessio, AC; Ito, S; Sun, YE; Wang, Z; Wu, H; Xia, K; Zhang, Y; Zhao, K1
Brown, T; El-Sagheer, AH; Hansen, AS; Schofield, CJ; Thalhammer, A1
Cui, K; D'Alessio, AC; Ito, S; Sun, YE; Wang, Z; Wu, H; Zhang, Y; Zhao, K1
Andrews, S; Branco, MR; Ficz, G; Hore, TA; Krueger, F; Marques, CJ; Reik, W; Santos, F; Seisenberger, S1
Dai, Q; He, C; Pan, T; Song, CX1
Höbartner, C1
Christensen, J; Cloos, PA; Helin, K; Johansen, JV; Pedersen, MT; Rappsilber, J; Williams, K1
Ikeda, S; Okamoto, A; Sugizaki, K; Yanagisawa, H1
Barbera, AJ; Chen, T; Deng, J; Huang, S; Kong, L; Min, J; Nicholson, T; Shi, Y; Shi, YG; Tan, L; Wu, F; Xiong, L; Xu, G; Xu, Y; Zhang, H; Zhang, K; Zheng, L1
Dai, Q; He, C; Song, CX; Yu, M1
He, C; Song, CX3
Agarwal, S; Brudno, Y; Daley, GQ; Ecker, JR; Henderson, HR; Huang, Y; Kapranov, P; Ko, M; Lister, R; Liu, XS; Mahapatra, S; McLoughlin, EM; Milos, PM; Pape, UJ; Pastor, WA; Rao, A; Tahiliani, M1
Peters, AH; Véron, N1
Bitinaite, J; Chin, HG; Estève, PO; Feng, S; Jacobsen, SE; Kinney, SM; Pradhan, S; Stroud, H; Vaisvila, R; Zheng, Y1
Brenner, C; Chia, N; Lu, X; Ruden, DM; Senut, MC; Wang, L1
Bohlander, SK; Bultmann, S; Dufour, A; Herold, T; Kakadia, PM; Konstandin, N; Ksienzyk, B; Leonhardt, H; Mulaw, M; Schneider, F; Schneider, S; Spiekermann, K; Szwagierczak, A1
Dai, Q; He, C1
Dai, Q; He, C; Lu, XY; Song, CX; Sun, Y; Yang, CG; Yu, M1
Carell, T; Globisch, D; Münzel, M1
Feng, S; Jacobsen, SE; Morey Kinney, S; Pradhan, S; Stroud, H1
Nomura, A; Okamoto, A; Sugizaki, K; Yanagisawa, H1
Klungland, A; Robertson, AB; Robertson, J1
Carell, T; Deiml, CA; Hackner, B; Hagemeier, C; Müller, M; Münzel, M; Pfaffeneder, T; Truss, M1
Abramowitz, LK; Alberti, C; Bartolomei, MS; Bassi, MR; Bellacosa, A; Bruno, T; Caretti, E; Cigliano, A; Cortellino, S; Davidson, I; Devarajan, K; Fanciulli, M; Klein-Szanto, AJ; Kobi, D; Larue, L; Le Coz, M; Matsumoto, Y; Moore, R; Rambow, F; Renner, C; Sannai, M; Soprano, D; Wessels, A; Xu, J1
Han, JW; He, C; Hermetz, K; Jin, P; Kim, JJ; Kim, S; Li, X; Li, Y; Namburi, S; Ren, B; Rudd, MK; Song, CX; Szulwach, KE; Yoon, YS1
Antes, I; Bultmann, S; Cardoso, MC; Casa, V; Frauer, C; Hoffmann, T; Leonhardt, H1
Almire, C; Bernard, OA; Carbonne, B; Casadevall, N; da Costa Reis Monte Mor, B; Delhommeau, F; Droin, N; Godley, LA; Larghero, J; Le Couédic, JP; Massé, A; Mokrani, H; Pendino, F; Plo, I; Pronier, E; Ravanat, JL; Simon, A; Solary, E; Vainchenker, W; Vasanthakumar, A1
Bai, Y; Bradley, M; Chandran, S; Chebotareva, T; De Sousa, P; Dudnakova, T; Fletcher, J; Hannoun, Z; Hay, DC; Pells, S; Ruzov, A; Serio, A; Sullivan, G; Tsenkina, Y; Wilmut, I1
Wu, H; Zhang, Y3
Collins, LB; Dai, Q; He, C; Ito, S; Shen, L; Swenberg, JA; Wu, SC; Zhang, Y1
Guo, JU; Ming, GL; Song, H; Su, Y; Zhong, C1
Cohen-Karni, D; Guan, S; Pradhan, S; Quimby, A; Roberts, RJ; Wang, H; Wilson, G; Zheng, Y; Zhu, Z1
Cheng, AW; Choi, SW; Dawlaty, MM; Ganz, K; Gao, Q; Hu, YC; Jaenisch, R; Kim, J; Markoulaki, S; Page, DC; Powell, BE1
Chen, Z; Dai, Q; Ding, J; He, C; He, YF; Jia, Y; Li, BZ; Li, L; Li, X; Li, Z; Liu, P; Song, CX; Sun, Y; Tang, Q; Wang, Y; Xu, GL; Zhang, K1
Ku, CS; Naidoo, N; Soong, R; Wu, M1
Huang, TT; Li, Y; Pu, XY; Tang, H; Yamamura, KI1
Cheng, X; Horton, JR; Upadhyay, AK; Zhang, X1
Kohli, RM; Nabel, CS1
Deng, Z; Gu, TP; Guo, F; He, X; Iqbal, K; Jin, SG; Li, J; Liu, W; Pfeifer, GP; Shi, L; Shi, YG; Szabó, PE; Wu, HP; Xie, ZG; Xu, GF; Xu, GL; Yang, H1
Argani, P; Chaux, A; De Marzo, AM; Esopi, DM; Gerber, J; Haffner, MC; Iacobuzio-Donahue, C; Meeker, AK; Nelson, WG; Netto, GJ; Pellakuru, LG; Toubaji, A; Yegnasubramanian, S1
Ikeda, S; Nakamura, A; Okamoto, A; Sugizaki, K; Yanagisawa, H1
Inoue, A; Zhang, Y1
Kohli, RM; Manning, SA; Nabel, CS1
Chang, Q; Cheng, X; Dai, Q; Gearing, M; Godley, LA; He, C; Irier, H; Jin, P; Levey, AI; Li, X; Li, Y; Song, CX; Szulwach, KE; Upadhyay, AK; Vasanthakumar, A; Wu, H1
Chase, KA; Dong, E; Gavin, DP; Guidotti, A; Matrisciano, F; Sharma, RP1
Jiang, Y; Jin, SG; Krex, D; Lu, Q; Pfeifer, GP; Qiu, R; Rauch, TA; Schackert, G; Wang, Y1
Carell, T; Deiml, CA; Gnerlich, FA; Karaghiosoff, K; Koch, SC; Lischke, U; Münzel, M; Pfaffeneder, T; Stathis, D1
Branco, MR; Ficz, G; Reik, W1
Chang, Q; Chestnut, BA; Lesuisse, C; Martin, LJ; Price, A; Wong, M1
Clark, TA; Dai, Q; He, C; Kislyuk, A; Korlach, J; Lu, XY; Song, CX; Turner, SW1
Dixon, JM; Dunican, D; Harrison, DJ; Katz, E; Meehan, RR; Nestor, CE; Ottaviano, R; Reddington, J; Reinhardt, D; Sproul, D1
Flax, JD; Soloway, PD1
Dai, Q; He, C; Inoue, A; Shen, L; Zhang, Y1
Acevedo, LG; Jelinek, MA; Sanz, A1
Christensen, J; Helin, K; Williams, K1
Carrillo-de Santa Pau, E; Matarese, F; Stunnenberg, HG1
Chen, PB; Dong, X; Ee, LS; Fazzio, TG; Hung, JH; Li, R; Rando, OJ; Weng, Z; Yildirim, O1
Salbert, G; Weber, M1
Cuddapah, S; Freudenberg, JM; Ghosh, S; Hu, G; Jothi, R; Lackford, BL; Li, R; Wade, PA; Yellaboina, S; Zheng, X1
Bitinaite, J; Pradhan, S; Terragni, J; Zheng, Y1
Carell, T; Eigenbrod, S; Feiden, W; Globisch, D; Hackner, B; Kraus, TF; Kretzschmar, HA; Müller, M; Münzel, M; Pfaffeneder, T; Schüller, U; Wagner, M; Widmann, D1
Tsukada, Y1
Chen, Y; Gao, F; Guan, J; Li, Z; Su, L; Tang, B; Wang, Z; Yin, Y; Zhang, P; Zhang, S1
Chouliaras, L; Hof, PR; Keitel, S; Kenis, G; Rutten, BP; Schmitz, C; Steinbusch, HW; van den Hove, DL; van Os, J1
Chouliaras, L; Rutten, BP; van den Hove, DL1
Dahl, JA; Klungland, A; Ougland, R; Robertson, AB1
Irier, HA; Jin, P1
Aburatani, H; Asaoka, Y; Ijichi, H; Koike, K; Kudo, Y; Nagae, G; Tateishi, K; Yamamoto, K; Yamamoto, S; Yoshida, H1
Agirre, X; Alvarez, S; Boultwood, J; Calasanz, MJ; Cross, NC; Cruz Cigudosa, J; Delabesse, E; Fernandez-Mercado, M; Garate, L; Martín-Subero, JI; Martínez-Calle, N; Pérez, C; Prósper, F; Rifon, J; Segura, V; Varea, S; Wainscoat, JS1
Chang, Y; Cheng, X; Hashimoto, H; Howerton, SB; Liu, Y; Upadhyay, AK; Vertino, PM; Zhang, X1
Bai, F; Guan, KL; Ling, ZQ; Liu, J; Liu, Y; Ma, SH; Xiong, Y; Xu, ZD; Yang, H; Ye, D; Zhang, JY; Zhu, HG1
Almeida, RD; De Sousa, PA; Johnson, AD; Loose, M; Ruzov, A; Sottile, V1
Almeida, RD; Denning, C; Gering, M; Johnson, AD; Loose, M; Matsa, E; Ruzov, A; Sottile, V; Young, L1
Chen, H; Dzitoyeva, S; Manev, H3
Dunn, JJ; He, C; Kumaran, D; Song, CX; Yao, Q1
Karlic, H; Klaushofer, K; Spitzer, S; Thaler, R; Varga, F1
Balasubramanian, S; Booth, MJ; Branco, MR; Ficz, G; Krueger, F; Oxley, D; Reik, W1
Bocker, MT; Breiling, A; Lyko, F; Musch, T; Raddatz, G; Tuorto, F; Xu, M; Yang, FC1
Shi, YG; Tan, L1
Rugg-Gunn, PJ1
Dai, Q; He, C; Hon, GC; Jin, P; Kim, A; Li, X; Min, JH; Park, B; Ren, B; Shen, Y; Song, CX; Szulwach, KE; Yu, M; Zhang, L1
Cang, J; Huang, N; Tan, L; Wang, H; Xue, Z1
Cai, C; Chen, L; Kang, JX; Xie, A; Ye, X; Zhang, J; Zhang, L; Zhou, K1
Gao, KR; Yu, SY; Zhang, YX1
Becker, A; Denkhaus, D; Freihoff, D; Freihoff, J; Gessi, M; Hammes, J; Isselstein, LJ; Luxen, D; Müller, T; Pietsch, T; Simon, M; Waha, A; zur Mühlen, A1
Aguirre-Lavin, T; Beaujean, N; Boulesteix, C; Debey, P; Lehmann, G; Salvaing, J1
Guz, J; Jurgowiak, M; Oliński, R1
Inoue, K; Liu, YJ; Matoba, S; Nakamura, T; Nakano, T; Nakashima, H; Ogura, A; Shinkai, Y; Tachibana, M; Umehara, H1
Avner, S; Barloy-Hubler, F; Bizot, M; Durand, E; Eeckhoute, J; Froguel, P; Gheeraert, C; Lefebvre, P; Lucchetti-Miganeh, C; Madigou, T; Métivier, R; Oger, F; Palierne, G; Percevault, F; Péron, CL; Salbert, G; Sérandour, AA; Staels, B1
Chouliaras, L; Delbroek, L; Prickaerts, J; Rostamian, S; Rutten, BP; Sierksma, AS; Steinbusch, HW; van den Hove, DL1
Eberhart, CG; Haffner, MC; Nelson, WG; Orr, BA; Yegnasubramanian, S1
Klimašauskas, S; Kriukienė, E; Liutkevičiūtė, Z1
Couvé, S; Grin, I; Henriot, V; Ishchenko, AA; Moréra, S; Saparbaev, M; Vigouroux, A1
Wilkinson, J1
Leonard, K; Lloyd, AJ; López, CM; Wilkinson, MJ1
Balasubramanian, S; Beraldi, D; Booth, MJ; Branco, MR; Burgess, HE; Ficz, G; Murat, P; Oxley, D; Raiber, EA; Reik, W1
Ando, Y; Furuhata, E; Hasegawa, R; Hayashizaki, Y; Kubosaki, A; Shin, JW; Simon, C; Suzuki, H; Suzuki, T; Tomaru, Y1
Cai, C; Chen, L; Zhang, L1
Kinney, SR; Pradhan, S1
Belsham, D; Blencowe, BJ; Irimia, M; Jia, P; Kapranov, P; Khare, T; Klimasauskas, S; Koncevicius, K; Kriukiene, E; Kustra, R; Labrie, V; Liutkeviciute, Z; Moréra, S; Nazarians, A; Pai, S; Pal, M; Petronis, A; Ptak, C; Tice, R; Tochigi, M; Wang, SC; Wong, AH; Xia, M1
Ceol, C; Dresser, K; Duncan, LM; Fang, R; Houvras, Y; Hu, D; Hu, Y; Kaiser, UB; Kakavand, H; Khorasani, AJ; Kleffel, S; Larson, A; Lee, CW; Lezcano, C; Lian, BQ; Lian, CG; Mihm, MC; Murphy, GF; Neiswender, J; Schatton, T; Scolyer, RA; Shi, YG; Tan, L; Thompson, JF; Woda, BA; Wu, F; Xu, W; Xu, Y; Yang, Y; Zhan, Q; Zon, LI1
Miller, AK; Schüler, P1
Huang, Y; Pastor, WA; Rao, A; Zepeda-Martínez, JA1
Agarwal, S; Henderson, HR; Huang, Y; Pastor, WA; Rao, A1
Ding, W; Xing, TY1
Bolognani, F; Hackett, JA; Lempiäinen, H; Meehan, RR; Moggs, JG; Müller, A; Nestor, CE; Oakeley, EJ; Reinhardt, D; Schübeler, D; Terranova, R; Thomson, JP1
Duan, R; He, C; Jin, P; Li, X; Lin, L; Pan, Q; Song, CX; Szulwach, KE; Wang, T; Warren, ST; Wu, H1
He, C; Jin, P; Li, Y; Song, CX1
Fu, Y; He, C1
Kawamura, F; Kimura, H; Kubiura, M; Okano, M; Tada, M1
Bellini, M; Jones, P; Morgan, GT1
He, C; Hon, GC; Jin, P; Ren, B; Song, CX; Szulwach, KE; Yu, M1
Down, TA; Hackett, JA; Lee, C; Murakami, K; Sengupta, R; Surani, MA; Zylicz, JJ1
Du, J; Guo, Z; Liu, Y; Tang, B; Wang, Y; Wu, Y; Yang, L; Zhang, Y1
Ayata, P; Dewell, S; Heintz, N; Kriaucionis, S; Mellén, M1
Arita, K; Ariyoshi, M; Kato, T; Kimura, H; Kinoshita, M; Otani, J; Shirakawa, M; Suetake, I; Tajima, S1
Bapat, B; Olkhov-Mitsel, E1
Chen, ML; Feng, YQ; Huang, W; Liu, SM; Qi, JH; Shen, F; Wang, Y; Yuan, BF1
Borgaro, JG; Cheng, X; Guan, S; Jolyon, T; Liu, Y; Pradhan, S; Sun, D; Sun, Z; Terragni, J; Wang, H; Yu, L; Zheng, Y; Zhu, Z1
Barrasa, MI; Breiling, A; Cheng, AW; Dawlaty, MM; Faull, KF; Gao, Q; Jaenisch, R; Le, T; Li, Z; Lyko, F; Powell, BE; Raddatz, G; Xu, M1
Bernard, O; Calonne, E; Daniels, DL; Dawson, MA; Defrance, M; Delatte, B; Deplus, R; Fuks, F; Levine, RL; Méndez, J; Mercher, T; Murphy, N; Putmans, P; Schwinn, MK; Shih, AH; Solary, E; Urh, M; Volkmar, M1
Albasanz, JL; Barrachina, M; Blanch, M; Ferrer, I; Martín, M; Pereira-Veiga, T; Pérez-Navarro, E; Tyebji, S; Villar-Menéndez, I1
Hong, K; Inoue, A; Liu, R; Shen, L; Yamaguchi, S; Zhang, K; Zhang, Y1
Hahn, MA; Jiang, Y; Jin, SG; Jui, J; Li, AX; Lu, Q; Pfeifer, GP; Qiu, R; Wang, J; Wu, X; Zhang, H1
Mariappa, D; Pathak, S; van Aalten, DM1
Huang, N; Kong, L; Schwartz, L; Shi, Y; Shi, YG; Tan, L; Wu, F; Xiong, L; Xu, W; Xu, Y; Zheng, L1
Chen, Y; Oztürk, NC; Resendiz, M; Zhou, FC1
Calvopiña, JH; Chen, PY; Clark, AT; Fan, G; Faull, K; Feng, S; Huang, Y; Jacobsen, SE; Le, T; Lee, SA; Nee, K; Pellegrini, M; Rao, A; Vincent, JJ; Yoon, AJ1
Badoo, M; Baribault, C; Crain, CM; Crawford, GE; Ehrlich, M; Gertz, J; Lacey, M; Myers, RM; Pradhan, S; Song, L; Terragni, J; Tsumagari, K; Varley, KE1
Liu, S; Liu, X; Luo, Y; Pei, M; Shen, J; Xiao, L; Xu, Y; Yi, Y; Zhang, G; Zheng, W; Zhong, H1
Bauer, C; Boelens, R; Brinkman, AB; Carell, T; Eberl, HC; Gnerlich, F; Jansen, PW; Khan, F; Leonhardt, H; Lephikov, K; Mensinga, A; Müller, M; Müller, U; Münzel, M; Pfaffeneder, T; Smits, AH; Spruijt, CG; van Ingen, H; Vermeulen, M; Wagner, M; Walter, J1
Andreazza, AC; Carvalho, AF; Machado-Vieira, R; Moreno, RA; Soeiro-de-Souza, MG; Young, LT1
Bagci, H; Brown, KE; Dawlaty, MM; Feytout, A; Fisher, AG; Hajkova, P; Jaenisch, R; Kriaucionis, S; Landeira, D; Leitch, HG; Merkenschlager, M; Mooijman, D; Piccolo, FM; Soza-Ried, J; Tada, T1
Gambichler, T; Sand, M; Skrygan, M1
Borgaro, JG; Zhu, Z1
Shen, L; Zhang, Y1
Koh, KP; Rao, A1
Cai, T; Chen, J; Gao, S; Gao, Y; Huang, B; Huang, H; Jiang, Y; Kang, L; Kou, X; Li, K; Liu, W; Liu, X; Lu, Z; Wang, H; Wu, T; Xu, Z; Yao, C; Zhang, Y1
Gao, F; Gao, Z; Han, X; Huang, X; Lin, Z; Lu, H; Luo, H; Wang, J; Wen, B; Xia, Y; Yang, H; Yao, Y; Yi, N; Zhang, J; Zhang, X; Zhou, B1
Godley, LA; Madzo, J; Vasanthakumar, A1
Cai, C; Chen, LY; Kang, JX; Xie, AM; Ye, XX; Zhang, JJ; Zhang, LJ; Zhang, LT1
Court, BL; Minor, EA; Wang, G; Young, JI1
Bayley, H; Gong, L; Li, WW1
Amano, T; Anzai, M; Hatanaka, Y; Hosoi, Y; Kato, H; Kishigami, S; Matsumoto, K; Mitani, T; Nishihara, T; Nishikawa, S; Shimizu, N; Shin, SW; Tokoro, M1
Guibert, S; Weber, M1
Hunter, JM; Lempiäinen, H; Meehan, RR; Moggs, JG; Müller, A; Terranova, R; Thomson, JP1
D'Alessio, AC; Diep, D; Fung, HL; Shen, L; Wu, H; Yamaguchi, S; Zhang, K; Zhang, Y1
Chen, X; Hong, T; Hu, J; Mao, W; Wang, S; Xing, X; Zhou, X1
Akrap, I; Feliciello, I; Parazajder, J; Ugarković, D1
Guo, C; Han, C; Liao, YQ; Lin, X; Luo, HR; Sun, Q; Tang, TS; Wang, D; Wang, F; Wang, JQ; Wu, YS; Xie, W; Yang, Y; Yang, YG; Zhu, S1
Bian, XW; Bie, P; Chen, X; Cui, Y; Liu, C; Liu, L; Qian, C; Shan, J; Shen, J; Wu, L; Xia, F; Xu, Y; Yang, Z1
De Marzo, AM; Ghosh, S; Haffner, MC; Lotan, TL; Nelson, WG; Pellakuru, LG; Yegnasubramanian, S1
Jin, SG; Kim, SI; Pfeifer, GP1
Chu, JM; Feng, YQ; Huang, W; Tang, Y; Xing, XW; Xiong, J; Yuan, BF; Zhou, X1
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Cortez, D; Heintzman, DR; Lovejoy, CA; Mehta, KPM; Zhao, R1
Gao, X; Ju, L; Tang, S; Yu, M; Zhang, M; Zhou, X1
Chen, Z; Fan, M; Feng, Y; Liang, B; Luo, G; Shi, J; Sun, Y; Wang, K; Xu, X; Yu, M; Zhuang, Q1
Alisch, RS; Borth, LE; Hariharan, N; Hogan, KJ; Iskandar, BJ; Madrid, A; Papale, LA1
Fu, J; Huang, W; Liu, T; Pei, T; Song, Y; Tan, J; Xiao, L; Yang, S; Zhou, M1
Alkan, S; Huang, Q; Lim, W; McCormack, C; Siref, A1
Cao, F; Guo, Z; He, Y; Hu, X; Li, A; Liu, H; Tu, K; Wei, A; Xia, L; Xie, D; Yuan, J; Zhang, J1
Balzer, BL; Frishberg, DP; Shon, W; Yagi, S1
Andreou, AZ; Kouidou, S; Malousi, A1
Fujii, S; Hirano, K; Kojima, N; Kurita, R; Namihira, M; Suda, T1
Chen, S; Deng, K; Feng, F; Gong, F; Lu, L; Niu, Y; Pan, H; Tong, WM; Wang, R; Xu, Y; Yao, Y; You, H; Zhu, H1
Cao, D; Jiang, D; Li, J; Yu, H; Zhou, D1
Gackowski, D; Gawronski, M; Olinski, R; Starczak, M1
Trueman, RC; Wallis, MD1
Gering, M; Jessop, P1
Fossdal, CG; Viejo, M; Yakovlev, I1
Celik-Uzuner, S1
Gackowska, L; Gackowski, D; Labejszo, A1
Abakir, A; Alenezi, F; Ruzov, A1
Huang, Z; Kohli, RM; Meng, Y; Pfeifer, GP; Szabó, PE1
Branco, MR; De Borre, M1
Berrios, KN; Kohli, RM; Luo, M; Schutsky, EK; Wang, T; Wu, H1
Lentini, A; Nestor, CE1
Edwards, JR; Singh, MK1
Assad, N; Durell, S; Ray, S; Tillo, D; Ufot, A; Vinson, C1
Bao, B; Boerner, JL; Bollig-Fischer, A; Dyson, G; Mitrea, C; Teslow, EA1
Bhutani, N; Grandi, FC1
Bizet, M; Bonvin, E; Calonne, E; Deplus, R; Fidalgo, M; Fuentes-Iglesias, A; Fuks, F; Guallar, D; Hassabi, B; Hsu, PJ; Lan, J; Li Greci, A; Ma, C; Menschaert, G; Mies, F; Nachtergaele, S; Penning, A; Putmans, P; Rajan, N; Singh, NK; Song, R; Wang, J; Wong, JJL; Yuan, B1
Baudat, F; Biot, M; Clément, JA; de Massy, B; Grey, C; Imai, Y; Robert, T; Teragaki, M; Urbach, S1
Fan, XY; Shi, G; Zhao, P1
Kondo, T; Mochizuki, K; Oishi, N; Vuong, HG1
Chow, HM; Herrup, K; Li, J; Li, L; Ma, Z; Xu, K; Zhang, Y; Zhang, Z1
Antoine, M; Ashworth, A; Bergamaschi, A; Chau, K; Collin, F; Ellison, CK; Guler, GD; Ku, CJ; Levy, S; Lloyd, P; McCarthy, E; Ning, Y; Phillips, T; Quake, SR; Scott, A; Wang, W1
Gibas, P; Gordevičius, J; Kriukienė, E; Krjutškov, K; Kvederavičiūtė, K; Narmontė, M; Paluoja, P; Salumets, A; Tomkutė, V1
Cheng, Q; Feng, X; Li, M; Li, X; Liu, G; Luo, S; Sun, F; Sun, W; Tang, J; Tao, J; Tao, X; Wu, C; Wu, S; Wu, W; Xiao, Z; Yu, Y; Yun, Z; Zheng, L1
Bai, M; Cao, X; Chen, F; Fan, C; Su, L; Xue, J; Zhao, Y1
Alberge, JB; Attal, M; Avet-Loiseau, H; Campion, L; Carell, T; Denié, S; Guérin-Charbonnel, C; Magrangeas, F; Minvielle, S; Moreau, P; Sérandour, AA; Wagner, M1
Asanoma, K; Cui, L; Hori, E; Itakura, A; Kato, K; Kato, M; Kawakami, M; Kawamura, K; Kodama, K; Matsumura, Y; Onoyama, I; Takeda, S; Yagi, H; Yahata, H; Yoshida, S1
Chakrapani, A; Hocek, M; Krásný, L; Pohl, R; Ruiz-Larrabeiti, O; Vaňková Hausnerová, V1
Alberca, CD; Alisch, RS; Cánepa, ET; Chertoff, M; Gianatiempo, O; Madrid, A; Papale, LA1
Cao, S; Hu, J; Li, L; Wang, D; Wang, L; Wu, Q; Zhang, Z1
Cavalcante, RG; D'Silva, NJ; de Medeiros, MC; Fernandez, EM; Figueroa, ME; Liu, S; Qin, T; Rozek, LS; Sartor, MA; Wolf, GT; Zarins, KR1
Chen, C; Chiu, R; Duan, S; Han, L; He, C; Li, L; Lu, X; Song, Y; Xu, M; Zeng, C; Zhang, W; Zhang, Z1
Bonasio, R; Bozler, J; Garcia, BA; He, C; Janssen, KA; Schorn, AJ; Wilusz, JE1
Arensdorf, P; Beadell, AV; Bergamaschi, A; Bissonnette, M; Collin, F; Cui, XL; Deng, Z; Dougherty, U; Ellison, CK; Goel, A; He, C; Karpus, J; Ku, J; Levy, S; Nie, J; Ning, Y; Pekow, J; Sharma, G; Sieh, L; Talwar, R; Wei, J; West-Szymanski, DC; Zhang, W; Zhang, Z; Zhao, CWT1
Li, CC; Liu, M; Luo, X; Ma, F; Zhang, CY1
Astvatsaturyan, K; Fan, X; Lai, J; Peralta-Venturina, M; Seok, JY1
Green, SJ; Hyde, MV; Maienschein-Cline, M; McLachlan, A; Oropeza, CE; Shalaby, RE; Taha, TY; Tarnow, G1
Borkowska, J; Bujanowska, O; Cąkała-Jakimowicz, M; Domaszewska-Szostek, A; Kołodziej-Wojnar, P; Połosak, J; Puzianowska-Kuznicka, M; Wicik, Z1
Chen, S; Li, X; Liu, Y; Ma, Y; Sun, J; Wang, H; Zhang, N1
Fan, K; Fu, Y; Özata, DM; Theurkauf, WE; Weng, Z; Yu, T; Zamore, PD; Zhang, G1
Dong, YH; Hu, J; Li, CC; Luo, X; Shen, D; Zhang, CY; Zou, X1
Davaa, G; Hong, JY; Hong, K; Hyun, JK; Kim, SY; Kim, TU; Lee, SJ1
Bochtler, M; Czapinska, H; Helbrecht, I; Krakowska, K; Lutz, T; Pastor, M; Xu, SY1
Ahmed, AA; Chen, J; Cheng, J; Hu, Z; Inoue, M; Liu, Y; Siejka-Zielińska, P; Song, CX1
Cai, Z; Chen, G; Chen, H; Dong, X; He, Y; Hu, X; Liu, J; Liu, X; Wang, Y; Xia, L; Xie, D; Zhang, J; Zhong, S; Zhou, Y1
Bérubé, J; Coutant, K; Landreville, S; Lowry, CM; Pomerleau, J; Veilleux, MP; Wagner, JR; Weidmann, C1
Bordin, DL; Lirussi, L; Nilsen, H1
Cheng, Y; Jin, P; Luo, X; Moore, C; Qian, J; Song, G; Song, H; Song, Q; Wan, J; Wang, G; Zhu, H1
Buck, WR; Fossey, S; Liguori, MJ; Sharapova, T; Talaty, N; Van Vleet, TR1
DeNizio, JE; Dow, BJ; Drohat, AC; Ghanty, U; Kohli, RM; Serrano, JC1
Chen, HY; Chen, L; He, C; He, XH; Hong, Y; Jing, HM; Li, F; Li, W; Lin, J; Liu, H; Liu, J; Pang, M; Qin, Y; Wang, J; Xiao, XB; Xu, N; Yan, C; Yang, P; Yang, ZR; Zhang, L; Zhang, WL; Zhu, HC1
Fan, XY; He, XJ; Jian, LY; Li, XY; Shi, G; Wan, YX1
Balasubramanian, S; Broome, R; Carroll, JS; Chernukhin, I; D'Santos, C; Farcas, AM; Groen, AJ; Jamieson, S; Kishore, K; Mahtey, A; Mao, SQ; Papachristou, EK; Siersbæk, R; Tejedo, CG; Theodorou, V1
Chattopadhyay, I; Chopra, A; Dhar, R; Karmakar, S; Pethusamy, K; Sah, R; Seethy, A1
Chang, M; Cui, M; Cui, X; Huang, C; Jiang, J; Jin, F; Li, Q; Liang, ZY; Liu, Y; Niu, Y; Qian, J; Sun, L; Tong, WM; Wang, X; Wu, HW; Wu, SL; Yu, X; Yuan, F; Zhang, X1
Chen, J; Cheng, X; Gao, H; Li, X; Liu, N; Qu, W; Shu, Q; Tao, H; Xu, GL; Xu, W; Zhang, J1
Bai, J; Chen, M; Li, N; Liu, L; Pang, Y; Wang, L; Wang, Y; Zhang, H; Zhang, Y; Zhu, H1
Alruwaii, ZI; Ding, D; Fujikura, K; Goggins, MG; Haffner, MC; He, J; Hong, SM; Hruban, RH; Macgregor-Das, A; Meeker, AK; Roberts, NJ; Roy, S; Trujillo, MA; Wood, LD; Wright, M1
An, Y; Li, D; Zhao, JF1
Bearden, S; Hall, AR; Reiss, K; Rivas, F; Sethi, K; Wang, F; Zahid, OK1
Bruggeman, EC; Chen, J; Chen, L; Hales, CM; Kuehner, JN; Li, Y; Li, Z; McEachin, ZT; Wang, F; Wen, Z; Xu, C; Yang, J; Yao, B1
Abraham, AG; Blake, A; Blancher, C; Burns, A; D'Costa, Z; Eyres, M; Goldin, R; Hubert, A; Hughes, D; Hughes, S; Jones, S; Lanfredini, S; Maughan, T; Mukherjee, S; O'Neill, E; Sabbagh, A; Schuh, A; Silva, M; Soonawalla, Z; Thapa, A; Vavoulis, D; Verrill, C; Willenbrock, F; Xu, H1
Aljumaily, RMK; Dogan, F; Forsyth, NR; Kitchen, M1
Allen, EG; Barwick, BG; Castellino, RC; Chen, J; Chen, L; Conneely, KN; Jin, P; Johnson, ND; Kang, Y; Kenney, AM; Kim, H; Li, J; Li, Y; Liao, X; Lin, L; McSwain, L; Robinson, MH; Shu, Q; Van Meir, EG; Vertino, PM; Yuan, X; Zhang, Z; Zhao, J; Zhu, D1
Azzalin, G; Carissimi, C; De Paolis, V; Fulci, V; Laudadio, I; Lorefice, E1
Pradhan, S; Sun, Z; Terragni, J; Zheng, Y; Zhu, Z1
Olova, NN2
Eden, HE; Huang, Z; Robertson, KD; Rothbart, SB; Tiedemann, RL1
Kiihl, SF1
Bogdanovic, O; Skvortsova, K1
Xu, X; Zeisberg, EM1
Sequeira, VM; Vermeulen, M1
Huang, Z; Jin, SG; Johnson, J; Pfeifer, GP; Yu, J1
Chen, D; Dai, Z; Li, Y; Liu, SY; Xu, Y; Yu, Z; Zhang, Y; Zou, X1
Cheng, X; He, L; Huang, Y; Jin, T; Liang, J; Liu, S; Liu, X; Peng, Y; Shan, L; Shang, Y; Sun, L; Wang, Y; Wu, J; Wu, X; Xia, L; Xu, B; Yang, J; Yang, X; Yu, H; Zhang, Y; Zhang, Z1
Bellacosa, A; Georges, RO; González-Avalos, E; Lio, CJ; Nakayama, T; Onodera, A; Rao, A1
Allen, EG; Cao, Y; Gu, L; Jin, P; Li, R; Li, Y; Li, Z; Meng, C; Zhu, D1
Asada, S; Hagihara, Y; Maeda, T; Nakano, T; Yamaguchi, S1
Baranov, VS; Chiryaeva, OG; Dudkina, VS; Efimova, OA; Krapivin, MI; Pendina, AA; Petrova, LI; Smirnova, AA; Talantova, OE; Tikhonov, AV1
Allen, EG; Hu, Q; Jin, P; Li, Z; Miao, Z; Sun, M; Wan, B; Wang, J; Xu, X; Zhang, Q; Zhao, Y1
Kowluru, RA; Mohammad, G; Radhakrishnan, R1
Bai, D; Fan, Y; He, B; Liu, J; Meng, H; Peng, J; Tao, W; Yi, C; Zeng, H; Zhang, C; Zhang, Q; Zhang, X1
Gong, S; Ren, Z; Wu, N; Xu, L; Yin, H; Zhang, C; Zhang, Y1
Bronner, C; Dimitrov, S; Hamiche, A; Ibrahim, A; Klaholz, BP; Le Gras, S; Mohideen-Abdul, K; Papin, C; Stoll, I1
Bai, L; Ding, C; Feng, J; Gong, T; Li, J; Li, X; Li, Z; Liu, M; Lyu, J; Qin, J; Qin, Z; Wang, Y; Yang, G; Yang, W1
Berry, K; Gao, X; Jin, W; Liu, Y; Lu, G; Lu, QR; Mao, H; Mikoshiba, K; Ren, K; Wang, J; Wang, W; Wu, S; Xin, D; Xing, J; Xu, L; Zhang, K; Zhang, M; Zhao, X1
Azizgolshani, N; Chen, Y; Christensen, BC; Levy, JJ; Nguyen, LN; Perreard, L; Petersen, CL; Salas, LA1
Alam, A; An, J; Kim, H; Ko, M; Lim, S; Sideeq Bhat, K1
Shi, H; Zhang, S1
Chen, L; Hou, P; Li, K; Su, J; Sun, J; Wang, Y; Yan, C; Zhao, J; Zhou, M1
Boudra, R; Lian, CG; Ramsey, MR; Schmults, CD; Wang, D; Wells, M; Woappi, Y; Xu, S1
Hart, J; Keutgen, XM; Krausz, T; Olivas, A; Parilla, M; Setia, N; Sharma, AE; Wang, H; Weber, C; Yassan, L; Zhang, SS1
Chang, CC; Chao, TK; Chou, YC; Ko, PS; Lin, YC; Lin, YJ; Liu, NT; Perng, CL; Shang, HS; Wang, YC1
Battistini, F; Brun-Heath, I; Castellazzi, CL; Dans, PD; González, C; Labrador, M; Orozco, M; Portella, G; Terrazas, M; Villegas, N1
Chen, L; He, X; Li, D; Pei, S; Shen, Q; Wang, Q; Xu, S; Yu, H; Zhang, Y1
Carll, TC; Chiu, BC; Kline, J; Riedell, P; Smith, S; Tanager, KS; Tatarian, AH; Venkataraman, G; Yu, J1
Heintz, N; Rao, A; Riad, M; Stoyanova, E1
Diao, J; Du, Y; Lai, Y; Liu, JY1
Alisch, RS; Chen, K; Keleş, S; Madrid, A; Papale, LA; Sak, L; Zhang, Q1
Chialastri, A; Dey, SS; Wangsanuwat, C1
Christensen, BC; Kelsey, KT; Lee, MK; Perreard, L; Salas, LA; Zhang, Z1
Hu, X; Huang, R; Luo, K; Shi, H; Xie, D; Yan, X; Zhang, J; Zhang, W; Zhao, B1
Adam, S; Bashtrykov, P; Bräcker, J; Brockmeyer, J; Jeltsch, A; Klingel, V; Osteresch, B; Radde, NE1
Li, XR; Liang, WB; Wang, L; Yuan, R; Zhuo, Y1
Buchmuller, BC; Drescher, M; Dröden, J; Linser, R; Palei, S; Singh, H; Summerer, D1
Cen, X; Ou, J; Shen, Y; Wang, B; Wang, L1
Chen, L; Guo, X; He, X; Li, D; Li, S; Pei, S; Zhang, T1
Chen, L; Guo, Y; He, X; Hua, Q; Li, D; Liu, R; Meng, X; Pei, S; Wang, Y; Zhang, T; Zhang, Z; Zhu, X1
Lu, MJ; Lu, Y1
Gao, G; Huang, F; Jiang, D; Wang, J; Yu, J; Zhang, Y; Zhao, J1
Hu, J; Li, DL; Qiu, JG; Wang, ZY; Yuan, H; Zhang, CY1
Fang, T; Tang, C; Wang, H; Yin, J1
Chen, K; Li, Q; Wu, H; Yang, M; Zhou, S1
Ganguly, S; He, C; Karpus, J; Li, Z; Shah, S; Shao, J; Smith, J; Wang, S; West-Szymanski, D; Zu, Y1
Zou, H1
Li, X; Shi, H; Zhang, S1
Bi, SH; Biekedawulaiti, G; Chen, HY; Chen, L; Chu, JL; Du, LW; Duolikun, M; He, Y; Li, LL; Lin, J; Ma, RY; Maimaiti, Y; Tie, L; Wan, XY; Wang, ZH; Yang, ZQ; Zhang, L; Zheng, MZ1
Bhatti, P; Chiu, BC; Derman, BA; He, C; Jakubowiak, A; Karpus, J; Langerman, SS; Luo, L; Sukhanova, M; Zhang, S; Zhang, W; Zhang, Z1
Ci, W; Huang, C; Qi, J; Shi, Y; Tan, Y; Wang, J; Zhang, J; Zhang, Q1
Balaiah, M; Mani, S; Ramasamy, D; Rao, AKDM; Sundersingh, S; Thangarajan, R; Veluswami, S; Vittal Rangan, A1
Aggarwal, R; Alumkal, JJ; Annala, M; Ashworth, A; Beer, TM; Bergamaschi, A; Bjartell, A; Bose, R; Boutros, PC; Chen, S; Chen, WS; Chesner, L; Chi, KN; Chou, J; Cui, XL; Evans, CP; Feng, FY; Fong, L; Foye, A; Fraser, M; Gilbert, LA; Gleave, M; Haffner, MC; He, C; He, HH; Herberts, C; Hua, JT; Huang, FW; Huang, J; Lang, JM; Lara, PN; Levy, S; Li, H; Lloyd, P; Lundberg, A; Luo, J; Mahajan, NP; Maher, CA; Maheshwari, A; Maurice-Dror, C; McCarthy, E; Moreno-Rodriguez, T; Morgans, AK; Ng, SWS; Ning, Y; Perry, MD; Petricca, J; Phillips, T; Posadas, EM; Quigley, DA; Reiter, RE; Rettig, MB; Shrestha, R; Sjöström, M; Small, EJ; Thomas, GV; Tran, PT; Witte, ON; Wyatt, AW; Ye, W; Zhang, M; Zhao, SG; Zoubeidi, A; Zwart, W1
Liang, WB; Yang, F; Yang, X; Yuan, R; Zhuo, Y1
Cao, F; Hu, X; Liu, Y; Mao, Q; Xia, L; Xie, D; Yan, X; Yan, Z; Yin, S; Yuan, Y; Zhang, J; Zhang, S1
Atzberger, A; Boettger, T; Braun, T; Ding, D; Gärtner, U; Günther, S; Kolahian, S; Kuenne, C; Li, X; Liu, H; Liu, S; Looso, M; Offermanns, S; Potente, M; Renz, H; Weissmann, N; Wu, F; Yuan, X; Zhou, Y1
Pfeifer, GP1
Badiola, JJ; Betancor, M; Bolea, R; Hernaiz, A; López-Pérez, Ó; Martín-Burriel, I; Salinas-Pena, M; Sentre, S; Toivonen, JM; Zaragoza, P1
Cai, JB; Chen, Y; Fan, J; Gao, C; Guo, XJ; Huang, XY; Ke, AW; Lu, JC; Pei, YZ; Shen, YH; Shi, GM; Shi, YG; Sun, QM; Wei, CY; Yang, GH; Yang, X; Zhang, PF; Zhou, J1
Bang, D; Kim, HP; Kim, TY; Lee, D; Lee, J1
Achrem, M; Gackowski, D; Kalinka, A; Starczak, M; Stępień, E1
Arvanitakis, Z; Beadell, AV; Bennett, DA; Capuano, AW; He, C; Zhang, W; Zhang, Z1
Dai, E; Dai, M; Feng, J; Jia, Y; Liu, Z; Ye, L; Zhang, H1
Ganguly, S; He, C; Li, Z; Shah, S; Shao, J; Zu, Y2
Arvanitakis, Z; Bissonnette, MA; Cai, J; Cai, Q; Cheng, SY; Chiu, BC; Cui, X; He, C; Shi, Y; Wu, K; Zeng, C; Zhang, W; Zhang, X; Zhang, Z2
Avraham, S; Bahr, O; Dankers, A; Ebenstein, Y; Gilat, N; Käver, L; Koren-Michowitz, M; Margalit, S; Michaeli, Y; Nifker, G; Schütz, L; Torchinsky, D; Weinhold, E; Zirkin, S1

Reviews

108 review(s) available for 5-hydroxymethylcytosine and 5-methylcytosine

ArticleYear
Modified bases in bacteriophage DNAs.
    Annual review of microbiology, 1980, Volume: 34

    Topics: 2-Aminopurine; 5-Methylcytosine; Adenine; Bacteriophages; Base Composition; Chemical Phenomena; Chemistry; Chemistry, Physical; Cytosine; Deoxyribonucleases; DNA Replication; DNA, Viral; Nucleic Acid Conformation; Pentoxyl; Substrate Specificity; Templates, Genetic; Thymine; Transcription, Genetic; Uracil

1980
Genetic-epigenetic intersection in trophoblast differentiation: implications for extraembryonic tissue function.
    Epigenetics, 2010, Jan-01, Volume: 5, Issue:1

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cytosine; DNA Methylation; Embryonic Stem Cells; Epigenesis, Genetic; Female; Gene Expression Regulation; Humans; Models, Biological; Models, Genetic; Placenta; Plants; Pregnancy; Stem Cells; Trophoblasts

2010
Advances in DNA methylation: 5-hydroxymethylcytosine revisited.
    Clinica chimica acta; international journal of clinical chemistry, 2011, May-12, Volume: 412, Issue:11-12

    Topics: 5-Methylcytosine; Animals; Cell Line; Cytosine; DNA; DNA Methylation; Genome; Hematologic Neoplasms; Humans; Oxygenases

2011
Hypothesis: environmental regulation of 5-hydroxymethylcytosine by oxidative stress.
    Epigenetics, 2011, Volume: 6, Issue:7

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; DNA Methylation; Histone Demethylases; Humans; Models, Biological; Oxidative Stress

2011
5-Hydroxymethylcytosine, the sixth base of the genome.
    Angewandte Chemie (International ed. in English), 2011, Jul-11, Volume: 50, Issue:29

    Topics: 5-Methylcytosine; Animals; Bacteriophages; Cell Differentiation; Central Nervous System; Chromatography, Liquid; Cytosine; DNA; DNA Methylation; DNA, Viral; Epigenesis, Genetic; Female; Genome; Humans; Male; Mass Spectrometry; Neoplasms; Pluripotent Stem Cells

2011
Emerging roles of TET proteins and 5-hydroxymethylcytosines in active DNA demethylation and beyond.
    Cell cycle (Georgetown, Tex.), 2011, Aug-15, Volume: 10, Issue:16

    Topics: 5-Methylcytosine; Animals; Cell Cycle Proteins; Cytosine; Dioxygenases; DNA Methylation; DNA Repair; DNA-Binding Proteins; Humans; Mixed Function Oxygenases; Nuclear Proteins; Proto-Oncogene Proteins

2011
Studying the epigenome using next generation sequencing.
    Journal of medical genetics, 2011, Volume: 48, Issue:11

    Topics: 5-Methylcytosine; Animals; Base Composition; Cytosine; DNA; DNA Methylation; DNA, Intergenic; Epigenesis, Genetic; Epigenomics; Gene Expression; Genome; Genome-Wide Association Study; High-Throughput Nucleotide Sequencing; Histones; Humans; Mice; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Quantitative Trait Loci; Quantitative Trait, Heritable

2011
The curious chemical biology of cytosine: deamination, methylation, and oxidation as modulators of genomic potential.
    ACS chemical biology, 2012, Jan-20, Volume: 7, Issue:1

    Topics: 5-Methylcytosine; Adaptation, Physiological; Animals; Cytosine; Deamination; DNA; DNA Repair; Gene Expression Regulation; Genome; Genomics; Humans; Methylation; Mice; Mice, Knockout; Oxidation-Reduction; Polymorphism, Genetic

2012
Uncovering the role of 5-hydroxymethylcytosine in the epigenome.
    Nature reviews. Genetics, 2011, Nov-15, Volume: 13, Issue:1

    Topics: 5-Methylcytosine; Animals; Blastocyst Inner Cell Mass; Cell Differentiation; Cell Proliferation; Chromatin; CpG Islands; Cytosine; Deamination; Dioxygenases; DNA; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Epigenesis, Genetic; Epigenomics; Gene Expression Regulation, Developmental; Gene Silencing; Genome; Hematopoiesis; Humans; Mice; Mice, Knockout; Mixed Function Oxygenases; Proto-Oncogene Proteins; Tissue Distribution

2011
Novel DNA binding domain-based assays for detection of methylated and nonmethylated DNA.
    Epigenomics, 2011, Volume: 3, Issue:1

    Topics: 5-Methylcytosine; Biomarkers; CpG Islands; Cytosine; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Primers; Humans; Immunoprecipitation; Polymerase Chain Reaction; Protein Interaction Domains and Motifs; Sensitivity and Specificity; Sulfites

2011
Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation.
    Genes & development, 2011, Dec-01, Volume: 25, Issue:23

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cytosine; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Humans; Models, Biological; Oxidation-Reduction

2011
DNA methylation: TET proteins-guardians of CpG islands?
    EMBO reports, 2011, Dec-23, Volume: 13, Issue:1

    Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Regulation; Humans; Mice; Proto-Oncogene Proteins; Transcription, Genetic

2011
Hydroxylation mediates chromatin demethylation.
    Journal of biochemistry, 2012, Volume: 151, Issue:3

    Topics: 5-Methylcytosine; Animals; Chromatin; Cytosine; DNA Methylation; Humans; Hydroxylation; Methylation

2012
Dynamics of DNA methylation in aging and Alzheimer's disease.
    DNA and cell biology, 2012, Volume: 31 Suppl 1

    Topics: 5-Methylcytosine; Aging; Alzheimer Disease; Animals; Cytosine; DNA; DNA Methylation; Humans; Neurodegenerative Diseases

2012
Tet family proteins and 5-hydroxymethylcytosine in development and disease.
    Development (Cambridge, England), 2012, Volume: 139, Issue:11

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; DNA-Binding Proteins; Embryonic Development; Epigenesis, Genetic; Humans; Mice; Mice, Knockout; Molecular Structure; Multigene Family; Neoplasms; Oxidation-Reduction; Protein Structure, Tertiary; Proto-Oncogene Proteins

2012
Epigenetic features of the mouse trophoblast.
    Reproductive biomedicine online, 2012, Volume: 25, Issue:1

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Epigenesis, Genetic; Female; Fetal Growth Retardation; Gene Expression Regulation, Developmental; Histones; Mice; Models, Animal; Pregnancy; Pregnancy Complications; Trophoblasts

2012
[Progress of research on 5-hydroxymethylcytosine].
    Yi chuan = Hereditas, 2012, Volume: 34, Issue:5

    Topics: 5-Methylcytosine; Animals; Cytosine; Epigenesis, Genetic; Humans

2012
[Oxidation and deamination of nucleobases as an epigenetic tool].
    Postepy higieny i medycyny doswiadczalnej (Online), 2012, May-24, Volume: 66

    Topics: 5-Methylcytosine; Animals; Base Composition; Chromatin Assembly and Disassembly; Cytosine; Deamination; DNA; DNA Methylation; DNA-Binding Proteins; Epigenomics; Gene Expression Regulation; Guanine; Mutation; Neoplasms; Oxidation-Reduction; Sequence Analysis, DNA; Transcription, Genetic

2012
5-Hydroxymethylcytosine--the elusive epigenetic mark in mammalian DNA.
    Chemical Society reviews, 2012, Nov-07, Volume: 41, Issue:21

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; Epigenesis, Genetic; Humans; Mammals

2012
Ten eleven translocation enzymes and 5-hydroxymethylation in mammalian development and cancer.
    Advances in experimental medicine and biology, 2013, Volume: 754

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryonic Development; Humans; Neoplasms; Proto-Oncogene Proteins

2013
[Recent advance in DNA epigenetic modifications-the sixth base in the genome].
    Sheng li ke xue jin zhan [Progress in physiology], 2012, Volume: 43, Issue:3

    Topics: 5-Methylcytosine; Animals; Biomarkers; Cell Differentiation; Cytosine; DNA; Epigenesis, Genetic; Gene Expression Regulation; Genome; Humans; Methylation

2012
Nucleic acid modifications with epigenetic significance.
    Current opinion in chemical biology, 2012, Volume: 16, Issue:5-6

    Topics: 5-Methylcytosine; Adenosine; Animals; Cytosine; DNA; Epigenesis, Genetic; Humans; Methylation; RNA

2012
Strategies for discovery and validation of methylated and hydroxymethylated DNA biomarkers.
    Cancer medicine, 2012, Volume: 1, Issue:2

    Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; Disease; DNA Methylation; Epigenesis, Genetic; Gene Expression Profiling; Genetic Markers; Humans; Restriction Mapping; Sequence Analysis, DNA

2012
Epigenetic medicine and fetal alcohol spectrum disorders.
    Epigenomics, 2013, Volume: 5, Issue:1

    Topics: 5-Methylcytosine; Cell Differentiation; Cytosine; DNA Methylation; Embryonic Development; Epigenesis, Genetic; Ethanol; Female; Fetal Alcohol Spectrum Disorders; Gene Expression Regulation; Histones; Humans; Pregnancy

2013
5-Hydroxymethylcytosine: generation, fate, and genomic distribution.
    Current opinion in cell biology, 2013, Volume: 25, Issue:3

    Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA Methylation; Epigenesis, Genetic; Genome; Genome-Wide Association Study; Humans

2013
DNA methylation and methylcytosine oxidation in cell fate decisions.
    Current opinion in cell biology, 2013, Volume: 25, Issue:2

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Chromatin Assembly and Disassembly; Cytosine; DNA Methylation; Epigenesis, Genetic; Genome; Histones; Humans; Oxidation-Reduction; Transcription Factors

2013
Perturbations of 5-hydroxymethylcytosine patterning in hematologic malignancies.
    Seminars in hematology, 2013, Volume: 50, Issue:1

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA-Binding Proteins; Epigenesis, Genetic; Hematologic Neoplasms; Humans; Isocitrate Dehydrogenase; Mutation; Proto-Oncogene Proteins

2013
Functions of DNA methylation and hydroxymethylation in mammalian development.
    Current topics in developmental biology, 2013, Volume: 104

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Embryonic Development; Gene Expression Regulation, Developmental; Genome; Humans; Mammals

2013
Tet family of 5-methylcytosine dioxygenases in mammalian development.
    Journal of human genetics, 2013, Volume: 58, Issue:7

    Topics: 5-Methylcytosine; Animals; Blastocyst; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryonic Development; Genome; Germ Cells; Humans; Proto-Oncogene Proteins

2013
[Role of 5-hydroxymethylcytosine and TET proteins in epigenetic regulation of gene expression].
    Postepy biochemii, 2013, Volume: 59, Issue:1

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Hematopoiesis; Humans; Mixed Function Oxygenases; Neoplasms; Proto-Oncogene Proteins

2013
Cytosine modifications in neurodevelopment and diseases.
    Cellular and molecular life sciences : CMLS, 2014, Volume: 71, Issue:3

    Topics: 5-Methylcytosine; Cytosine; DNA Methylation; DNA-Cytosine Methylases; Humans; Models, Molecular; Nervous System Diseases; Neurogenesis

2014
Epigenetic profiles as defined signatures of xenobiotic exposure.
    Mutation research. Genetic toxicology and environmental mutagenesis, 2014, Volume: 764-765

    Topics: 5-Methylcytosine; Animals; Carcinogens; Chemical Safety; Chromatin; Cytosine; Disease Progression; DNA Methylation; Epigenesis, Genetic; Epigenomics; Genetic Markers; Genome; Humans; Transcriptome; Xenobiotics

2014
TET enzymatic oxidation of 5-methylcytosine, 5-hydroxymethylcytosine and 5-formylcytosine.
    Mutation research. Genetic toxicology and environmental mutagenesis, 2014, Volume: 764-765

    Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA; DNA Methylation; DNA Repair; Humans; Models, Biological; Mutagenesis; Neoplasms; Oxidation-Reduction

2014
DNA modifications and neurological disorders.
    Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics, 2013, Volume: 10, Issue:4

    Topics: 5-Methylcytosine; Brain; Cytosine; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation; Humans; Nervous System Diseases; Neurons

2013
TET enzymes, TDG and the dynamics of DNA demethylation.
    Nature, 2013, Oct-24, Volume: 502, Issue:7472

    Topics: 5-Methylcytosine; Animals; Blastocyst; Cellular Reprogramming; Cytosine; DNA Methylation; DNA Repair; DNA Replication; Humans; Neoplasms; Oxidation-Reduction; Thymine DNA Glycosylase

2013
Investigating 5-hydroxymethylcytosine (5hmC): the state of the art.
    Methods in molecular biology (Clifton, N.J.), 2014, Volume: 1094

    Topics: 5-Methylcytosine; Animals; Base Sequence; Cytosine; DNA Methylation; Genetic Loci; Mammals; Molecular Biology; Molecular Sequence Data

2014
5-hydroxymethylcytosine: a new insight into epigenetics in cancer.
    Cancer biology & therapy, 2014, Volume: 15, Issue:1

    Topics: 5-Methylcytosine; Animals; Brain Neoplasms; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Humans; Leukemia; Mixed Function Oxygenases; Neoplasms; Proto-Oncogene Proteins

2014
5-hydroxymethylcytosine profiling as an indicator of cellular state.
    Epigenomics, 2013, Volume: 5, Issue:6

    Topics: 5-Methylcytosine; Animals; Biomarkers, Tumor; Cytosine; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Humans; Models, Genetic; Neoplasms; Organ Specificity; Signal Transduction

2013
Recent advances in the bioanalysis of modified nucleotides in epigenetic studies.
    Bioanalysis, 2013, Volume: 5, Issue:23

    Topics: 5-Methylcytosine; Animals; Chromatography, High Pressure Liquid; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Humans; Immunohistochemistry; In Situ Hybridization, Fluorescence; Nucleotides

2013
[The world of double helix--"it did not escape our notice"].
    Postepy biochemii, 2013, Volume: 59, Issue:3

    Topics: 5-Methylcytosine; Base Sequence; Chromatin; Cytosine; DNA; DNA Repair; DNA, Catalytic; Epigenomics; Forecasting; Humans; Molecular Biology; Nanotechnology

2013
Comprehensive DNA methylation and hydroxymethylation analysis in the human brain and its implication in mental disorders.
    Neuropharmacology, 2014, Volume: 80

    Topics: 5-Methylcytosine; Animals; Biological Evolution; Brain; Cytosine; DNA Methylation; Down-Regulation; Epigenesis, Genetic; Gene Expression Regulation; Humans; Mental Disorders; Models, Biological; Nerve Tissue Proteins; Neurogenesis; Neurons; Up-Regulation

2014
5-hydroxymethylcytosine-mediated DNA demethylation in stem cells and development.
    Stem cells and development, 2014, May-01, Volume: 23, Issue:9

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; DNA-Binding Proteins; Humans; Stem Cells

2014
Epigenetic modifications in the nervous system and their impact upon cognitive impairments.
    Neuropharmacology, 2014, Volume: 80

    Topics: 5-Methylcytosine; Acetylation; Animals; Central Nervous System; Cognition; Cognition Disorders; Cytosine; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation; Histone Deacetylases; Histones; Humans; Learning; Memory; Models, Biological; Nerve Tissue Proteins; Neurons; Protein Processing, Post-Translational; Rett Syndrome; Rubinstein-Taybi Syndrome

2014
The role of TET family proteins and 5-hydroxymethylcytosine in human tumors.
    Histology and histopathology, 2014, Volume: 29, Issue:8

    Topics: 5-Methylcytosine; Cell Transformation, Neoplastic; Cytosine; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Humans; Neoplasms

2014
The role of 5-hydroxymethylcytosine in human cancer.
    Cell and tissue research, 2014, Volume: 356, Issue:3

    Topics: 5-Methylcytosine; Cytosine; DNA Methylation; DNA, Neoplasm; Humans; Neoplasms; Oxidation-Reduction

2014
Playing TETris with DNA modifications.
    The EMBO journal, 2014, Jun-02, Volume: 33, Issue:11

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression Regulation; Humans; Neoplasms; Neurodegenerative Diseases; Oxidation-Reduction; Signal Transduction

2014
5-Hydroxymethylcytosine: A new player in brain disorders?
    Experimental neurology, 2015, Volume: 268

    Topics: 5-Methylcytosine; Brain Diseases; Cytosine; Humans

2015
Mitoepigenetics and drug addiction.
    Pharmacology & therapeutics, 2014, Volume: 144, Issue:2

    Topics: 5-Methylcytosine; Amphetamines; Animals; Cocaine; Cytosine; DNA, Mitochondrial; Dose-Response Relationship, Drug; Epigenesis, Genetic; Ethanol; Gene Expression; Humans; Mitochondria; Morphine; Oxidative Stress; Substance-Related Disorders

2014
New answers to old questions from genome-wide maps of DNA methylation in hematopoietic cells.
    Experimental hematology, 2014, Volume: 42, Issue:8

    Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; Enhancer Elements, Genetic; Hematopoiesis; Hematopoietic Stem Cells; Mice; Promoter Regions, Genetic; Repetitive Sequences, Nucleic Acid

2014
Connections between TET proteins and aberrant DNA modification in cancer.
    Trends in genetics : TIG, 2014, Volume: 30, Issue:10

    Topics: 5-Methylcytosine; Azacitidine; Cytosine; Decitabine; Dioxygenases; DNA Methylation; DNA Modification Methylases; DNA-Binding Proteins; Hematologic Neoplasms; Humans; Isocitrate Dehydrogenase; Mixed Function Oxygenases; Molecular Targeted Therapy; Mutation; Neoplasms; Proto-Oncogene Proteins; Small Molecule Libraries

2014
DNA demethylation, Tet proteins and 5-hydroxymethylcytosine in epigenetic reprogramming: an emerging complex story.
    Genomics, 2014, Volume: 104, Issue:5

    Topics: 5-Methylcytosine; Animals; Cellular Reprogramming; Cytosine; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Humans; Induced Pluripotent Stem Cells; Models, Biological; Oxidation-Reduction

2014
Loss of 5-hydroxymethylcytosine in cancer: cause or consequence?
    Genomics, 2014, Volume: 104, Issue:5

    Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; DNA, Neoplasm; Humans; Mixed Function Oxygenases; Neoplasms; Oxidation-Reduction; Proto-Oncogene Proteins

2014
5-Hydroxymethylcytosine: a stable or transient DNA modification?
    Genomics, 2014, Volume: 104, Issue:5

    Topics: 5-Methylcytosine; Animals; Brain; Cytosine; DNA Methylation; DNA Replication; DNA-Binding Proteins; Humans

2014
TET enzymes and DNA hydroxymethylation in neural development and function - how critical are they?
    Genomics, 2014, Volume: 104, Issue:5

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Humans; Neurogenesis; Neurons; Oxidation-Reduction

2014
From development to diseases: the role of 5hmC in brain.
    Genomics, 2014, Volume: 104, Issue:5

    Topics: 5-Methylcytosine; Aging; Animals; Cytosine; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Humans; Nervous System Diseases; Neurons

2014
Genomic distribution and possible functions of DNA hydroxymethylation in the brain.
    Genomics, 2014, Volume: 104, Issue:5

    Topics: 5-Methylcytosine; Animals; Brain; Cytosine; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Genome; Humans; Oxidation-Reduction

2014
Expanding the epigenetic landscape: novel modifications of cytosine in genomic DNA.
    Cold Spring Harbor perspectives in biology, 2014, Oct-01, Volume: 6, Issue:10

    Topics: 5-Methylcytosine; Cytosine; DNA; Epigenesis, Genetic; Models, Genetic; Oxidation-Reduction

2014
Determinants of valid measurements of global changes in 5'-methylcytosine and 5'-hydroxymethylcytosine by immunolocalisation in the early embryo.
    Reproduction, fertility, and development, 2015, Volume: 27, Issue:5

    Topics: 5-Methylcytosine; Animals; DNA Methylation; Embryo, Mammalian; Embryonic Development; Immunohistochemistry

2015
Epigenetic regulations through DNA methylation and hydroxymethylation: clues for early pregnancy in decidualization.
    Biomolecular concepts, 2014, Volume: 5, Issue:2

    Topics: 5-Methylcytosine; Animals; Chromatin; Cytosine; Decidua; DNA Methylation; Embryo Implantation; Epigenesis, Genetic; Female; Gene Expression Regulation; Histones; Humans; Pregnancy; Protein Processing, Post-Translational

2014
5-hydroxymethylcytosine: a potential therapeutic target in cancer.
    Epigenomics, 2014, Volume: 6, Issue:5

    Topics: 5-Methylcytosine; Animals; Antineoplastic Agents; Cytosine; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; Epigenesis, Genetic; Humans; Neoplasms

2014
New themes in the biological functions of 5-methylcytosine and 5-hydroxymethylcytosine.
    Immunological reviews, 2015, Volume: 263, Issue:1

    Topics: 5-Methylcytosine; Animals; Ascorbic Acid; Cytosine; Diet; DNA Methylation; Folic Acid; Hematologic Neoplasms; Humans; MicroRNAs; Promoter Regions, Genetic; Structure-Activity Relationship; Transcription Factors

2015
5-Hydroxymethylcytosine: An epigenetic mark frequently deregulated in cancer.
    Biochimica et biophysica acta, 2015, Volume: 1855, Issue:2

    Topics: 5-Methylcytosine; Biomarkers, Tumor; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Humans; Isocitrate Dehydrogenase; Mutation; Neoplasms; Proto-Oncogene Proteins

2015
DNA methylation and hydroxymethylation in stem cells.
    Cell biochemistry and function, 2015, Volume: 33, Issue:4

    Topics: 5-Methylcytosine; Adult; Animals; Cell Differentiation; Cytosine; DNA Methylation; Epigenesis, Genetic; Humans; Stem Cells

2015
Hydroxymethylation and its potential implication in DNA repair system: A review and future perspectives.
    Gene, 2015, Jun-15, Volume: 564, Issue:2

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Repair; Humans; Mental Disorders; Neoplasms; Neurodegenerative Diseases

2015
5-hydroxymethylcytosine in cancer: significance in diagnosis and therapy.
    Cancer genetics, 2015, Volume: 208, Issue:5

    Topics: 5-Methylcytosine; Cytosine; Dioxygenases; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA-Binding Proteins; Humans; Isocitrate Dehydrogenase; Neoplasms; Proto-Oncogene Proteins

2015
Epigenetic modifications in DNA could mimic oxidative DNA damage: A double-edged sword.
    DNA repair, 2015, Volume: 32

    Topics: 5-Methylcytosine; Base Pair Mismatch; CpG Islands; Cytosine; Deamination; DNA Damage; DNA Methylation; DNA Repair; Epigenesis, Genetic; Gene Expression; Humans; Molecular Mimicry; Oxidation-Reduction; Thymine DNA Glycosylase

2015
The TET2 interactors and their links to hematological malignancies.
    IUBMB life, 2015, Volume: 67, Issue:6

    Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA-Binding Proteins; Epigenesis, Genetic; Genes, Tumor Suppressor; Hematologic Neoplasms; Hematopoiesis; Humans; Mice; Mutation; Protein Interaction Maps; Proto-Oncogene Proteins

2015
Role of 5-hydroxymethylcytosine in neurodegeneration.
    Gene, 2015, Oct-01, Volume: 570, Issue:1

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Epigenesis, Genetic; Humans; Neurodegenerative Diseases

2015
Functions of TET Proteins in Hematopoietic Transformation.
    Molecules and cells, 2015, Volume: 38, Issue:11

    Topics: 5-Methylcytosine; Animals; Cell Transformation, Neoplastic; Cytosine; Dioxygenases; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression Regulation, Leukemic; Genes, Tumor Suppressor; Hematologic Neoplasms; Hematopoiesis; Humans; Leukemia, Lymphoid; Leukemia, Myeloid; Mice; Oxidation-Reduction

2015
Practical guidelines and consideration of using RRHP for 5hmC detection.
    Epigenomics, 2016, Volume: 8, Issue:2

    Topics: 5-Methylcytosine; Animals; Computational Biology; Cytosine; DNA Methylation; Epigenesis, Genetic; Epigenomics; Gene Expression Profiling; Gene Library; Guidelines as Topic; High-Throughput Nucleotide Sequencing; Humans

2016
Hydroxymethyl cytosine marks in the human mitochondrial genome are dynamic in nature.
    Mitochondrion, 2016, Volume: 27

    Topics: 5-Methylcytosine; Cytosine; DNA, Mitochondrial; Epigenesis, Genetic; Gene Expression Regulation; Genome, Mitochondrial; Humans

2016
DNA methylation dynamics in neurogenesis.
    Epigenomics, 2016, Volume: 8, Issue:3

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cytosine; DNA Methylation; Embryo, Mammalian; Embryonic Stem Cells; Epigenesis, Genetic; Histones; Humans; Mammals; Neurogenesis

2016
[Advances on the profiling of 5-hydroxymethylcytosine].
    Yi chuan = Hereditas, 2016, Volume: 38, Issue:3

    Topics: 5-Methylcytosine; Animals; Cytosine; Epigenomics; High-Throughput Screening Assays; Humans

2016
Physiological and pathological implications of 5-hydroxymethylcytosine in diseases.
    Oncotarget, 2016, 07-26, Volume: 7, Issue:30

    Topics: 5-Methylcytosine; CpG Islands; Dioxygenases; DNA (Cytosine-5-)-Methyltransferases; DNA Demethylation; DNA Methylation; DNA-Binding Proteins; Embryonic Development; Enzyme Inhibitors; Epigenesis, Genetic; Humans; Mixed Function Oxygenases; Neoplasms; Nervous System Diseases; Promoter Regions, Genetic; Proto-Oncogene Proteins

2016
High-throughput sequencing offers new insights into 5-hydroxymethylcytosine.
    Biomolecular concepts, 2016, Jun-01, Volume: 7, Issue:3

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation; Genetic Predisposition to Disease; Genome-Wide Association Study; High-Throughput Nucleotide Sequencing; Humans; Organ Specificity

2016
New hope: the emerging role of 5-hydroxymethylcytosine in mental health and disease.
    Epigenomics, 2016, Volume: 8, Issue:7

    Topics: 5-Methylcytosine; Animals; DNA Methylation; Epigenesis, Genetic; Gene Expression; Humans; Mental Disorders; Mental Health

2016
Uncovering the Role of the Methylome in Dementia and Neurodegeneration.
    Trends in molecular medicine, 2016, Volume: 22, Issue:8

    Topics: 5-Methylcytosine; Aging; Animals; Brain; Dementia; DNA Methylation; Epigenesis, Genetic; Epigenomics; Humans; Neurodegenerative Diseases

2016
Are there specific readers of oxidized 5-methylcytosine bases?
    BioEssays : news and reviews in molecular, cellular and developmental biology, 2016, Volume: 38, Issue:10

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; DNA-Binding Proteins; Humans

2016
The emerging insights into catalytic or non-catalytic roles of TET proteins in tumors and neural development.
    Oncotarget, 2016, Sep-27, Volume: 7, Issue:39

    Topics: 5-Methylcytosine; Animals; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Humans; Neoplasm Proteins; Neoplasms; Nerve Tissue Proteins; Neurogenesis; Neurons; Protein Conformation; Signal Transduction; Structure-Activity Relationship

2016
DNA methylation: conducting the orchestra from exposure to phenotype?
    Clinical epigenetics, 2016, Volume: 8

    Topics: 5-Methylcytosine; 5' Untranslated Regions; CpG Islands; DNA Methylation; Environmental Exposure; Epigenesis, Genetic; Gene Expression; Gene Expression Regulation; Humans; Phenotype; Protein Isoforms; Receptors, Glucocorticoid

2016
The elusive role of 5'-hydroxymethylcytosine.
    Epigenomics, 2016, Volume: 8, Issue:11

    Topics: 5-Methylcytosine; Animals; DNA Methylation; Epigenesis, Genetic; Histones; Humans; Oxidation-Reduction

2016
Research Advances in the Mutation of TET2 Gene in Myeloid Maligancies.
    Zhongguo yi xue ke xue yuan xue bao. Acta Academiae Medicinae Sinicae, 2016, 10-10, Volume: 38, Issue:5

    Topics: 5-Methylcytosine; Dioxygenases; DNA-Binding Proteins; Hematologic Neoplasms; Humans; Mutation; Proto-Oncogene Proteins

2016
Proteins That Read DNA Methylation.
    Advances in experimental medicine and biology, 2016, Volume: 945

    Topics: 5-Methylcytosine; Adenine; Cytosine; DNA; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Protein Domains

2016
DNA Base Flipping: A General Mechanism for Writing, Reading, and Erasing DNA Modifications.
    Advances in experimental medicine and biology, 2016, Volume: 945

    Topics: 5-Methylcytosine; Adenine; Cytosine; DNA; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Eukaryota; Prokaryotic Cells; Protein Domains

2016
Current and Emerging Technologies for the Analysis of the Genome-Wide and Locus-Specific DNA Methylation Patterns.
    Advances in experimental medicine and biology, 2016, Volume: 945

    Topics: 5-Methylcytosine; DNA; DNA Methylation; Epigenesis, Genetic; Genome; High-Throughput Nucleotide Sequencing; Humans; Sequence Analysis, DNA

2016
Oxidized C5-methyl cytosine bases in DNA: 5-Hydroxymethylcytosine; 5-formylcytosine; and 5-carboxycytosine.
    Free radical biology & medicine, 2017, Volume: 107

    Topics: 5-Methylcytosine; Animals; Carcinogenesis; Cell Self Renewal; Cytosine; DNA; DNA Methylation; DNA Repair; Humans; Oxidation-Reduction; Transcription, Genetic

2017
Decreased 5-hydroxymethylcytosine levels correlate with cancer progression and poor survival: a systematic review and meta-analysis.
    Oncotarget, 2017, Jan-03, Volume: 8, Issue:1

    Topics: 5-Methylcytosine; Cytosine; DNA Methylation; Humans; Lymphatic Metastasis; Neoplasms; Prognosis

2017
The application of genome-wide 5-hydroxymethylcytosine studies in cancer research.
    Epigenomics, 2017, Volume: 9, Issue:1

    Topics: 5-Methylcytosine; Animals; Biomarkers, Tumor; DNA Methylation; Epigenesis, Genetic; Humans; Neoplasms; Sequence Analysis, DNA

2017
The role of 5-hydroxymethylcytosine in melanoma.
    Melanoma research, 2017, Volume: 27, Issue:3

    Topics: 5-Methylcytosine; DNA Methylation; Epigenesis, Genetic; Humans; Melanoma

2017
Quantitation and mapping of the epigenetic marker 5-hydroxymethylcytosine.
    BioEssays : news and reviews in molecular, cellular and developmental biology, 2017, Volume: 39, Issue:5

    Topics: 5-Methylcytosine; Animals; Antibody Specificity; Base Sequence; Chromatography, High Pressure Liquid; Chromosome Mapping; DNA; DNA Restriction Enzymes; Epigenesis, Genetic; Fluorescence Resonance Energy Transfer; Genetic Markers; Glycosylation; Humans; Mass Spectrometry; Sequence Analysis, DNA; Single Molecule Imaging

2017
The role of 5-hydroxymethylcytosine in development, aging and age-related diseases.
    Ageing research reviews, 2017, Volume: 37

    Topics: 5-Methylcytosine; Aging; Animals; Cell Differentiation; Cytosine; DNA Methylation; Epigenesis, Genetic; Humans; Neoplasms; Oxidation-Reduction

2017
DNA Modifications and Alzheimer's Disease.
    Advances in experimental medicine and biology, 2017, Volume: 978

    Topics: 5-Methylcytosine; Aging; Alzheimer Disease; Animals; Causality; Disease Models, Animal; DNA Methylation; DNA-Cytosine Methylases; Epigenesis, Genetic; Forecasting; Gene Expression Regulation; Genome-Wide Association Study; Humans; Mice; Mice, Transgenic; Nerve Tissue Proteins; Tissue Array Analysis

2017
Technologies for Deciphering Epigenomic DNA Patterns.
    Advances in experimental medicine and biology, 2017, Volume: 978

    Topics: 5-Methylcytosine; CpG Islands; Cytosine; DNA Methylation; Epigenomics; Formaldehyde; Humans; Microarray Analysis; Paraffin Embedding; Sulfites; Tissue Fixation; Uracil

2017
The role of TET-mediated DNA hydroxymethylation in prostate cancer.
    Molecular and cellular endocrinology, 2018, 02-15, Volume: 462, Issue:Pt A

    Topics: 5-Methylcytosine; Animals; DNA Methylation; Epigenesis, Genetic; Humans; Male; Models, Biological; Prostatic Neoplasms; Proto-Oncogene Proteins

2018
Research progress on 5hmC and TET dioxygenases in neurodevelopment and neurological diseases.
    Yi chuan = Hereditas, 2017, Dec-20, Volume: 39, Issue:12

    Topics: 5-Methylcytosine; Animals; Dioxygenases; Humans; Mixed Function Oxygenases; Nervous System; Nervous System Diseases; Neurogenesis; Proto-Oncogene Proteins

2017
Epigenetic Modifications of Cytosine: Biophysical Properties, Regulation, and Function in Mammalian DNA.
    BioEssays : news and reviews in molecular, cellular and developmental biology, 2018, Volume: 40, Issue:3

    Topics: 5-Methylcytosine; Animals; Crystallography, X-Ray; Cytosine; Dioxygenases; DNA; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Humans; Mammals; Models, Molecular; Nucleic Acid Conformation

2018
TET Enzymes and 5hmC in Adaptive and Innate Immune Systems.
    Frontiers in immunology, 2019, Volume: 10

    Topics: 5-Methylcytosine; Adaptive Immunity; Animals; Biomarkers; Cell Differentiation; DNA Methylation; DNA-Binding Proteins; Enzymes; Epigenesis, Genetic; Gene Expression Regulation; Humans; Immunity, Innate; Lymphocyte Subsets; Proto-Oncogene Proteins

2019
Towards precision medicine: advances in 5-hydroxymethylcytosine cancer biomarker discovery in liquid biopsy.
    Cancer communications (London, England), 2019, 03-29, Volume: 39, Issue:1

    Topics: 5-Methylcytosine; Animals; Biomarkers, Tumor; Cell-Free Nucleic Acids; Epigenomics; Humans; Liquid Biopsy; Neoplasms; Precision Medicine

2019
Role of ten-eleven translocation proteins and 5-hydroxymethylcytosine in hepatocellular carcinoma.
    Cell proliferation, 2019, Volume: 52, Issue:4

    Topics: 5-Methylcytosine; Animals; Biomarkers, Tumor; Carcinoma, Hepatocellular; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Down-Regulation; Epigenesis, Genetic; Humans; Liver Neoplasms; MicroRNAs; Mixed Function Oxygenases; Proto-Oncogene Proteins; RNA Processing, Post-Transcriptional; Transcription, Genetic

2019
Epigenetic Function of TET Family, 5-Methylcytosine, and 5-Hydroxymethylcytosine in Hematologic Malignancies.
    Oncology research and treatment, 2019, Volume: 42, Issue:6

    Topics: 5-Methylcytosine; Animals; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Hematologic Neoplasms; Humans; Mixed Function Oxygenases; Mutation; Proto-Oncogene Proteins

2019
TET enzymes in neurophysiology and brain function.
    Neuroscience and biobehavioral reviews, 2019, Volume: 102

    Topics: 5-Methylcytosine; Animals; Brain; Dioxygenases; DNA Methylation; Epigenesis, Genetic; Humans; Mixed Function Oxygenases; Neuronal Plasticity

2019
The DNA methylation landscape in cancer.
    Essays in biochemistry, 2019, 12-20, Volume: 63, Issue:6

    Topics: 5-Methylcytosine; Animals; DNA; DNA Methylation; Epigenomics; Humans; Neoplasms

2019
The Impact of Environmental Factors on 5-Hydroxymethylcytosine in the Brain.
    Current environmental health reports, 2020, Volume: 7, Issue:2

    Topics: 5-Methylcytosine; Brain; Environmental Biomarkers; Environmental Exposure; Humans

2020
Environmental Epigenetics and Genome Flexibility: Focus on 5-Hydroxymethylcytosine.
    International journal of molecular sciences, 2020, May-02, Volume: 21, Issue:9

    Topics: 5-Methylcytosine; Animals; Benzhydryl Compounds; DNA Methylation; Environmental Exposure; Epigenesis, Genetic; Epigenomics; Gene Expression Regulation, Developmental; Genome; Humans; Phenols

2020
Hydroxymethylation and tumors: can 5-hydroxymethylation be used as a marker for tumor diagnosis and treatment?
    Human genomics, 2020, 05-06, Volume: 14, Issue:1

    Topics: 5-Methylcytosine; Animals; Biomarkers, Tumor; DNA Methylation; Epigenesis, Genetic; Humans; Neoplasms

2020
Cellular response to endogenous DNA damage: DNA base modifications in gene expression regulation.
    DNA repair, 2021, Volume: 99

    Topics: 5-Methylcytosine; Animals; DNA; DNA Damage; DNA Glycosylases; DNA Repair; Epigenesis, Genetic; Gene Expression Regulation; Guanine; Humans

2021
TETology: Epigenetic Mastermind in Action.
    Applied biochemistry and biotechnology, 2021, Volume: 193, Issue:6

    Topics: 5-Methylcytosine; Animals; Dioxygenases; DNA Methylation; Epigenesis, Genetic; Humans

2021
RNA modifications act as regulators of cell death.
    RNA biology, 2021, Volume: 18, Issue:12

    Topics: 5-Methylcytosine; Adenosine; Animals; Cell Death; Humans; RNA Processing, Post-Transcriptional; RNA Stability; RNA, Messenger; Signal Transduction

2021

Trials

2 trial(s) available for 5-hydroxymethylcytosine and 5-methylcytosine

ArticleYear
Characterization of acute myeloid leukemia based on levels of global hydroxymethylation.
    Blood, 2014, Aug-14, Volume: 124, Issue:7

    Topics: 5-Methylcytosine; Acute Disease; Adolescent; Adult; Aged; Cytosine; Dioxygenases; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3A; DNA Mutational Analysis; DNA-Binding Proteins; Humans; Isocitrate Dehydrogenase; Leukemia, Myeloid; Middle Aged; Mutation; Prognosis; Promoter Regions, Genetic; Proto-Oncogene Proteins; Survival Analysis; Young Adult

2014
DNA hydroxymethylation combined with carotid plaques as a novel biomarker for coronary atherosclerosis.
    Aging, 2019, 05-23, Volume: 11, Issue:10

    Topics: 5-Methylcytosine; Aged; Biomarkers; Carotid Intima-Media Thickness; Case-Control Studies; Coronary Artery Disease; DNA Methylation; Female; Humans; Leukocytes, Mononuclear; Male; Plaque, Atherosclerotic

2019

Other Studies

981 other study(ies) available for 5-hydroxymethylcytosine and 5-methylcytosine

ArticleYear
Reaction of bisulfite with the 5-hydroxymethyl group in pyrimidines and in phage DNAs.
    Biochemistry, 1979, Feb-20, Volume: 18, Issue:4

    Topics: 5-Methylcytosine; Chemical Phenomena; Chemistry; Coliphages; Cytosine; DNA, Viral; Pentoxyl; Pyrimidines; Spectrophotometry, Ultraviolet; Sulfites; Uracil

1979
Evidence for a near UV-induced photoproduct of 5-hydroxymethylcytosine in bacteriophage T4 that can be recognized by endonuclease V.
    Molecular & general genetics : MGG, 1978, Nov-16, Volume: 167, Issue:1

    Topics: 5-Methylcytosine; Coliphages; Cytosine; DNA, Viral; Endonucleases; Substrate Specificity; Ultraviolet Rays

1978
Modification and restriction of T-even bacteriophages. In vitro degradation of deoxyribonucleic acid containing 5-hydroxymethylctosine.
    The Journal of biological chemistry, 1976, Mar-25, Volume: 251, Issue:6

    Topics: 5-Methylcytosine; Coliphages; Cytosine; DNA Restriction Enzymes; DNA, Circular; DNA, Viral; Escherichia coli; Genetic Complementation Test; Kinetics; Mutation; Phenotype; Species Specificity; Templates, Genetic

1976
[Bacteriophage T2 DNA modification by O-methylhydroxylamine].
    Biokhimiia (Moscow, Russia), 1976, Volume: 41, Issue:8

    Topics: 5-Methylcytosine; Chemical Phenomena; Chemistry; Coliphages; Cytosine; DNA, Viral; Hydroxylamines; Nucleic Acid Denaturation; Viral Proteins

1976
Trace detection of modified DNA bases via moving-belt liquid chromatography-mass spectrometry using electrophoric derivatization and negative chemical ionization.
    Journal of chromatography, 1989, Mar-31, Volume: 465, Issue:2

    Topics: 5-Methylcytosine; Animals; Cattle; Chemical Phenomena; Chemistry; Chromatography, High Pressure Liquid; Cytosine; DNA; Electrophoresis; Mass Spectrometry

1989
5-Hydroxymethylcytosine DNA glycosylase activity in mammalian tissue.
    Biochemical and biophysical research communications, 1988, Mar-30, Volume: 151, Issue:3

    Topics: 5-Methylcytosine; Animals; Cattle; Chromatography, High Pressure Liquid; Cytosine; DNA Glycosylases; DNA, Viral; N-Glycosyl Hydrolases; T-Phages; Thymus Gland

1988
Cloning and physical mapping of an early region of the bacteriophage T4 genome.
    Genetics, 1984, Volume: 106, Issue:1

    Topics: 5-Methylcytosine; Chromosome Deletion; Chromosome Mapping; Cloning, Molecular; Cytosine; DNA Restriction Enzymes; Genes, Viral; T-Phages

1984
Formation of 5-hydroxymethylcytosine-containing pyrimidine dimers in UV-irradiated bacteriophage T4 DNA.
    Photochemistry and photobiology, 1983, Volume: 37, Issue:5

    Topics: 5-Methylcytosine; Cytosine; DNA, Viral; Escherichia coli; Pyrimidine Dimers; T-Phages; Ultraviolet Rays

1983
Region-specific recombination in phage T4. I. A special glucosyl-dependent recombination system.
    Genetics, 1980, Volume: 94, Issue:3

    Topics: 5-Methylcytosine; Capsid; Cytosine; DNA, Viral; Escherichia coli; Genes, Viral; Glucosyltransferases; Hot Temperature; Mutation; Recombination, Genetic; T-Phages

1980
Shutoff of lambda gene expression by bacteriophage T4: role of the T4 alc gene.
    Journal of virology, 1980, Volume: 35, Issue:1

    Topics: 5-Methylcytosine; Bacteriophage lambda; Cytosine; DNA, Circular; Escherichia coli; Genes, Viral; Mutation; Nucleic Acid Conformation; Nucleic Acid Hybridization; Protein Biosynthesis; RNA, Viral; T-Phages; Time Factors; Transcription, Genetic; Viral Interference

1980
Molecular cloning and expression of a novel hydroxymethylcytosine-specific restriction enzyme (PvuRts1I) modulated by glucosylation of DNA.
    Journal of molecular biology, 1994, Sep-09, Volume: 242, Issue:1

    Topics: 5-Methylcytosine; Amino Acid Sequence; Base Sequence; Cloning, Molecular; Cytosine; DNA; DNA Restriction Enzymes; DNA, Viral; Genes, Bacterial; Glucose; Molecular Sequence Data; Substrate Specificity; T-Phages

1994
The Northrop hypothesis and the origins of a virus-induced enzyme.
    Protein science : a publication of the Protein Society, 1994, Volume: 3, Issue:1

    Topics: 5-Methylcytosine; Cytosine; DNA, Viral; Escherichia coli; History, 20th Century; Hydroxymethyl and Formyl Transferases; Models, Biological; T-Phages; Transferases; United States

1994
5-Methylcytosine attack by hydroxyl free radicals and during carbon tetrachloride promoted liver microsomal lipid peroxidation: structure of reaction products.
    Chemico-biological interactions, 1996, Jan-05, Volume: 99, Issue:1-3

    Topics: 5-Methylcytosine; Animals; Carbon Tetrachloride; Cytosine; Free Radicals; Gas Chromatography-Mass Spectrometry; Hydantoins; Hydrogen Peroxide; Hydroxyl Radical; Iron; Lipid Peroxidation; Male; Microsomes, Liver; Molecular Structure; Rats; Rats, Sprague-Dawley; Ultraviolet Rays

1996
Solid phase synthesis and restriction endonuclease cleavage of oligodeoxynucleotides containing 5-(hydroxymethyl)-cytosine.
    Nucleic acids research, 1997, Feb-01, Volume: 25, Issue:3

    Topics: 5-Methylcytosine; Cytosine; Deoxyribonuclease HpaII; DNA Restriction Enzymes; DNA-Cytosine Methylases; Molecular Structure; Oligodeoxyribonucleotides

1997
Nucleic acid economy in bacteria infected with bacteriophage T2. I. Purine and pyrimidine composition.
    The Journal of general physiology, 1953, Volume: 36, Issue:6

    Topics: 5-Methylcytosine; Bacteria; Bacteriophage T4; Bacteriophages; Cytosine; Escherichia coli; Nucleic Acids; Purines

1953
The bases of the nucleic acids of some bacterial and animal viruses: the occurrence of 5-hydroxymethylcytosine.
    The Biochemical journal, 1953, Volume: 55, Issue:5

    Topics: 5-Methylcytosine; Animals; Bacteriophages; Cytosine; Nucleic Acids; Pyrimidines; Viruses

1953
Some precursors of the 5-hydroxymethylcytosine of T6r+ bacteriophage.
    The Journal of biological chemistry, 1954, Volume: 209, Issue:2

    Topics: 5-Methylcytosine; Bacteriophages; Cytosine; Pyrimidines

1954
Structural evidence of a passive base-flipping mechanism for beta-glucosyltransferase.
    The Journal of biological chemistry, 2004, Aug-13, Volume: 279, Issue:33

    Topics: 5-Methylcytosine; Adenine; Asparagine; Aspartic Acid; Binding Sites; Catalysis; Crystallography, X-Ray; Cytosine; DNA; Glucosyltransferases; Kinetics; Models, Molecular; Mutagenesis, Site-Directed; Nucleic Acid Conformation; Oligonucleotides; Plasmids; Protein Binding; Protein Conformation; Uridine Diphosphate

2004
Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2).
    Nucleic acids research, 2004, Volume: 32, Issue:14

    Topics: 5-Methylcytosine; Base Sequence; Binding Sites; Chromosomal Proteins, Non-Histone; CpG Islands; Cytosine; DNA Damage; DNA Methylation; DNA-Binding Proteins; Electrophoretic Mobility Shift Assay; Guanosine; Methyl-CpG-Binding Protein 2; Models, Molecular; Oligodeoxyribonucleotides; Oxidative Stress; Protein Structure, Tertiary; Repressor Proteins

2004
A type IV modification dependent restriction nuclease that targets glucosylated hydroxymethyl cytosine modified DNAs.
    Journal of molecular biology, 2007, Feb-23, Volume: 366, Issue:3

    Topics: 5-Methylcytosine; Capsid Proteins; Chromatography, Affinity; Coliphages; Cytosine; DNA Restriction Enzymes; DNA, Viral; Escherichia coli; Escherichia coli Proteins; Evolution, Molecular; Mutant Proteins; Myoviridae; Nucleic Acid Conformation; Nucleotides; Protein Binding; Site-Specific DNA-Methyltransferase (Adenine-Specific); Substrate Specificity

2007
Exclusion of glucosyl-hydroxymethylcytosine DNA containing bacteriophages is overcome by the injected protein inhibitor IPI*.
    Journal of molecular biology, 2007, Feb-23, Volume: 366, Issue:3

    Topics: 5-Methylcytosine; Amino Acid Sequence; Bacteriophage T4; Bacteriophages; Base Sequence; Capsid Proteins; Clone Cells; Cytosine; DNA Restriction Enzymes; DNA, Viral; Escherichia coli; Escherichia coli Proteins; Genes, Bacterial; Molecular Sequence Data; Prophages; Sequence Analysis, DNA; Substrate Specificity

2007
The mildiomycin biosynthesis: initial steps for sequential generation of 5-hydroxymethylcytidine 5'-monophosphate and 5-hydroxymethylcytosine in Streptoverticillium rimofaciens ZJU5119.
    Chembiochem : a European journal of chemical biology, 2008, May-23, Volume: 9, Issue:8

    Topics: 5-Methylcytosine; Amino Acid Sequence; Chromatography, High Pressure Liquid; Cloning, Molecular; Cytidine Monophosphate; Cytosine; Mass Spectrometry; Molecular Sequence Data; Molecular Structure; Multigene Family; Sequence Alignment; Streptomycetaceae; Substrate Specificity

2008
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.
    Science (New York, N.Y.), 2009, May-15, Volume: 324, Issue:5929

    Topics: 5-Methylcytosine; Amino Acid Sequence; Animals; Cell Line; Cytosine; Dinucleoside Phosphates; DNA; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Humans; Hydroxylation; Mass Spectrometry; Mice; Mixed Function Oxygenases; Molecular Sequence Data; Proto-Oncogene Proteins; RNA Interference; Sequence Alignment; Transfection

2009
The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain.
    Science (New York, N.Y.), 2009, May-15, Volume: 324, Issue:5929

    Topics: 5-Methylcytosine; Animals; Brain Chemistry; Cell Line; Cerebellum; Chromatography, High Pressure Liquid; Chromatography, Thin Layer; Cytosine; Deoxycytidine; DNA; DNA Damage; Humans; Mass Spectrometry; Mice; Purkinje Cells

2009
The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing.
    PloS one, 2010, Jan-26, Volume: 5, Issue:1

    Topics: 5-Methylcytosine; Base Sequence; Chromatography, Liquid; Cytosine; Mass Spectrometry; Molecular Sequence Data; Polymerase Chain Reaction; Sulfites

2010
Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine.
    Nucleic acids research, 2010, Volume: 38, Issue:11

    Topics: 5-Methylcytosine; Antibodies; Cytosine; DNA; DNA Methylation; DNA-Binding Proteins; Electrophoretic Mobility Shift Assay; Immunoprecipitation; Oligonucleotides; Sequence Analysis, DNA; Sulfites

2010
Enzymatic approaches and bisulfite sequencing cannot distinguish between 5-methylcytosine and 5-hydroxymethylcytosine in DNA.
    BioTechniques, 2010, Volume: 48, Issue:4

    Topics: 5-Methylcytosine; CpG Islands; Cytosine; DNA; DNA Methylation; DNA Restriction Enzymes; Genes, BRCA1; Humans; Octamer Transcription Factor-3; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites

2010
Quantification of the sixth DNA base hydroxymethylcytosine in the brain.
    Angewandte Chemie (International ed. in English), 2010, Jul-19, Volume: 49, Issue:31

    Topics: 5-Methylcytosine; Animals; Brain Chemistry; Cytosine; DNA; DNA Methylation; Mice

2010
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification.
    Nature, 2010, Aug-26, Volume: 466, Issue:7310

    Topics: 5-Methylcytosine; Alkaline Phosphatase; Animals; Blastocyst Inner Cell Mass; Cell Proliferation; Cytosine; Dioxygenases; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Regulation, Developmental; Gene Knockdown Techniques; Homeodomain Proteins; Mice; Nanog Homeobox Protein; Proto-Oncogene Proteins

2010
Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA.
    Nucleic acids research, 2010, Volume: 38, Issue:19

    Topics: 5-Methylcytosine; Animals; Cells, Cultured; Cytosine; DNA; Embryonic Stem Cells; Genetic Techniques; Genome; Glucosyltransferases; Mice

2010
Chemical discrimination between dC and 5MedC via their hydroxylamine adducts.
    Nucleic acids research, 2010, Volume: 38, Issue:21

    Topics: 5-Methylcytosine; Base Pairing; Cytosine; DNA; DNA Adducts; DNA Methylation; Hydroxylamines; Isomerism; Models, Molecular; Oligodeoxyribonucleotides; Sequence Analysis, DNA

2010
Identification of epigenetic DNA modifications with a protein nanopore.
    Chemical communications (Cambridge, England), 2010, Nov-21, Volume: 46, Issue:43

    Topics: 5-Methylcytosine; Cyclodextrins; Cytosine; DNA; Epigenesis, Genetic; Hemolysin Proteins; Nanopores

2010
MIRA-SNuPE, a quantitative, multiplex method for measuring allele-specific DNA methylation.
    Epigenetics, 2011, Volume: 6, Issue:2

    Topics: 5-Methylcytosine; Alleles; Animals; Chromosome Duplication; CpG Islands; Cytosine; DNA Methylation; Genomic Imprinting; Kidney; Liver; Mice; Sensitivity and Specificity; Sequence Analysis, DNA

2011
Efficient synthesis of 5-hydroxymethylcytosine containing DNA.
    Organic letters, 2010, Dec-17, Volume: 12, Issue:24

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; Genome; Molecular Structure

2010
Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine.
    Nature biotechnology, 2011, Volume: 29, Issue:1

    Topics: 5-Methylcytosine; Animals; Bacteriophage T4; Biotin; Cerebellum; Cytosine; DNA; Genome; Genome, Human; Glucosyltransferases; HEK293 Cells; HeLa Cells; Humans; Mice; Models, Molecular; Molecular Sequence Data; Sequence Analysis, DNA; Staining and Labeling

2011
Discrimination of methylcytosine from hydroxymethylcytosine in DNA molecules.
    Journal of the American Chemical Society, 2011, Jan-26, Volume: 133, Issue:3

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; Molecular Dynamics Simulation; Nucleic Acid Conformation; Polymerase Chain Reaction

2011
Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates.
    PloS one, 2010, Dec-23, Volume: 5, Issue:12

    Topics: 5-Methylcytosine; Animals; Calibration; Chromatography, High Pressure Liquid; Chromatography, Liquid; Cytosine; DNA Methylation; Immunohistochemistry; Mass Spectrometry; Mice; Models, Chemical; Oxygen; Spectrometry, Mass, Electrospray Ionization; Tissue Distribution

2010
Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases.
    Cancer cell, 2011, Jan-18, Volume: 19, Issue:1

    Topics: 5-Methylcytosine; Amino Acid Substitution; Animals; Binding, Competitive; Biocatalysis; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Catalytic Domain; Cell Line, Tumor; Cytosine; Dioxygenases; DNA-Binding Proteins; Endostatins; F-Box Proteins; Gene Expression; Glioma; Glutarates; Histone Demethylases; Histones; Homeodomain Proteins; Humans; Hypoxia-Inducible Factor 1, alpha Subunit; Hypoxia-Inducible Factor-Proline Dioxygenases; Isocitrate Dehydrogenase; Jumonji Domain-Containing Histone Demethylases; Ketoglutaric Acids; Mixed Function Oxygenases; Models, Molecular; Oxalates; Oxidoreductases, N-Demethylating; Procollagen-Proline Dioxygenase; Proto-Oncogene Proteins

2011
A sensitive mass spectrometry method for simultaneous quantification of DNA methylation and hydroxymethylation levels in biological samples.
    Analytical biochemistry, 2011, May-15, Volume: 412, Issue:2

    Topics: 5-Methylcytosine; Animals; Catalytic Domain; Chromatography, Liquid; Cytosine; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Fibroblasts; Humans; Hydroxylation; Induced Pluripotent Stem Cells; Mass Spectrometry; Mice; Mixed Function Oxygenases; Proto-Oncogene Proteins; Reproducibility of Results

2011
Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells.
    Cell stem cell, 2011, Feb-04, Volume: 8, Issue:2

    Topics: 5-Methylcytosine; Animals; Binding Sites; Cell Differentiation; Cell Lineage; Chromatin Immunoprecipitation; Computational Biology; Cytosine; Dioxygenases; DNA-Binding Proteins; Embryonic Stem Cells; Mice; Octamer Transcription Factor-3; Proto-Oncogene Proteins; Teratoma

2011
A novel method for the efficient and selective identification of 5-hydroxymethylcytosine in genomic DNA.
    Nucleic acids research, 2011, Volume: 39, Issue:8

    Topics: 5-Methylcytosine; Carrier Proteins; Cytosine; DNA; Embryonic Stem Cells; Gene Expression Regulation; Genome, Human; Genomics; Glucosyltransferases; Humans; Promoter Regions, Genetic; Protozoan Proteins

2011
High sensitivity 5-hydroxymethylcytosine detection in Balb/C brain tissue.
    Journal of visualized experiments : JoVE, 2011, Feb-01, Issue:48

    Topics: 5-Methylcytosine; Animals; Brain Chemistry; Cytosine; DNA; DNA Methylation; Mice; Mice, Inbred BALB C; Polymerase Chain Reaction

2011
DNA methyltransferase 1, cytosine methylation, and cytosine hydroxymethylation in mammalian mitochondria.
    Proceedings of the National Academy of Sciences of the United States of America, 2011, Mar-01, Volume: 108, Issue:9

    Topics: 5-Methylcytosine; Amino Acid Sequence; Animals; Base Sequence; Cell Compartmentation; Cytosine; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA, Mitochondrial; Genes, Mitochondrial; HCT116 Cells; Humans; Mice; Mitochondria; Molecular Sequence Data; Oxidative Stress; Protein Binding; Protein Sorting Signals; Transcription, Genetic

2011
Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine.
    Proceedings of the National Academy of Sciences of the United States of America, 2011, Mar-01, Volume: 108, Issue:9

    Topics: 5-Methylcytosine; Animals; Cellular Reprogramming; Chromosomal Proteins, Non-Histone; Cleavage Stage, Ovum; Cytosine; DNA-Binding Proteins; Embryo, Mammalian; Female; Fertilization; Gene Expression Regulation, Developmental; Genome; Male; Mice; Oocytes; Oxidation-Reduction; Repressor Proteins; Sequence Analysis, DNA; Sulfites; Zygote

2011
Methyltransferase-directed derivatization of 5-hydroxymethylcytosine in DNA.
    Angewandte Chemie (International ed. in English), 2011, Feb-25, Volume: 50, Issue:9

    Topics: 5-Methylcytosine; Cytosine; DNA; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; S-Adenosylmethionine; Selenium Compounds; Sulfhydryl Compounds

2011
Characterization of PvuRts1I endonuclease as a tool to investigate genomic 5-hydroxymethylcytosine.
    Nucleic acids research, 2011, Volume: 39, Issue:12

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; DNA Cleavage; DNA Restriction Enzymes; Genome; Mice

2011
Genomic mapping of 5-hydroxymethylcytosine in the human brain.
    Nucleic acids research, 2011, Volume: 39, Issue:12

    Topics: 5-Methylcytosine; Animals; Brain Chemistry; Cytosine; DNA; Gene Expression; Genomics; Humans; Mice; Promoter Regions, Genetic

2011
5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming.
    Nature communications, 2011, Volume: 2

    Topics: 5-Methylcytosine; Animals; Cattle; Cell Nucleus; Chromosomal Proteins, Non-Histone; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryo, Mammalian; Epigenomics; Female; Fertilization in Vitro; Gene Expression Regulation, Developmental; Gene Knockdown Techniques; Mammals; Mice; Mice, Knockout; Nuclear Transfer Techniques; Oxidation-Reduction; Proto-Oncogene Proteins; Rabbits; Repressor Proteins; Sex Factors; Zygote

2011
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells.
    Nature, 2011, May-19, Volume: 473, Issue:7347

    Topics: 5-Methylcytosine; Animals; Cell Line; Chromatin; CpG Islands; Cytosine; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Regulation, Developmental; Gene Silencing; Genome; Mice; Polycomb-Group Proteins; Promoter Regions, Genetic; Proto-Oncogene Proteins; Repressor Proteins; Transcription, Genetic

2011
Hydroxylation of methylated CpG dinucleotides reverses stabilisation of DNA duplexes by cytosine 5-methylation.
    Chemical communications (Cambridge, England), 2011, May-14, Volume: 47, Issue:18

    Topics: 5-Methylcytosine; Base Sequence; Cytosine; Cytosine Nucleotides; Dinucleoside Phosphates; DNA; DNA Methylation; Humans; Hydroxylation; Methylation; Molecular Sequence Data; Molecular Structure; Polymerase Chain Reaction

2011
Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells.
    Genes & development, 2011, Apr-01, Volume: 25, Issue:7

    Topics: 5-Methylcytosine; Animals; Cell Line; Chromatin; Cytosine; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Profiling; Gene Expression Regulation, Developmental; Genome-Wide Association Study; Mice; Proto-Oncogene Proteins; Transcription Factors

2011
Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation.
    Nature, 2011, May-19, Volume: 473, Issue:7347

    Topics: 5-Methylcytosine; Animals; Antibodies; Cell Differentiation; Cell Line; Cell Lineage; CpG Islands; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Down-Regulation; Embryoid Bodies; Embryonic Stem Cells; Euchromatin; Exons; Gene Expression Regulation, Developmental; Gene Silencing; Genome; Mice; Pluripotent Stem Cells; Promoter Regions, Genetic; Proto-Oncogene Proteins; Reproducibility of Results; Sequence Analysis, DNA; Transcription, Genetic

2011
Syntheses of two 5-hydroxymethyl-2'-deoxycytidine phosphoramidites with TBDMS as the 5-hydroxymethyl protecting group and their incorporation into DNA.
    The Journal of organic chemistry, 2011, May-20, Volume: 76, Issue:10

    Topics: 5-Methylcytosine; Cytosine; DNA; Organophosphorus Compounds; Siloxanes; Styrenes

2011
Enzymatic labeling of 5-hydroxymethylcytosine in DNA.
    Angewandte Chemie (International ed. in English), 2011, May-02, Volume: 50, Issue:19

    Topics: 5-Methylcytosine; Cytosine; DNA; DNA (Cytosine-5-)-Methyltransferases; Glycosyltransferases; Humans; Isotope Labeling; Tritium

2011
TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.
    Nature, 2011, May-19, Volume: 473, Issue:7347

    Topics: 5-Methylcytosine; Animals; Cell Line; CpG Islands; Cytosine; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA-Binding Proteins; Down-Regulation; Embryonic Stem Cells; Gene Knockdown Techniques; Mice; Protein Binding; Proto-Oncogene Proteins; Repressor Proteins; Sin3 Histone Deacetylase and Corepressor Complex; Transcription Initiation Site; Transcription, Genetic

2011
Facile synthesis of hydroxymethylcytosine-containing oligonucleotides and their reactivity upon osmium oxidation.
    Organic & biomolecular chemistry, 2011, Jun-07, Volume: 9, Issue:11

    Topics: 5-Methylcytosine; Crystallography, X-Ray; Cytosine; Models, Molecular; Molecular Structure; Oligonucleotides; Osmium; Oxidation-Reduction; Stereoisomerism; Transition Temperature

2011
Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells.
    Molecular cell, 2011, May-20, Volume: 42, Issue:4

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Regulation, Developmental; Genome-Wide Association Study; Mice; Mixed Function Oxygenases; Protein Binding; Protein Structure, Tertiary; Proto-Oncogene Proteins

2011
Detection of 5-hydroxymethylcytosine in a combined glycosylation restriction analysis (CGRA) using restriction enzyme Taq(α)I.
    Bioorganic & medicinal chemistry letters, 2011, Sep-01, Volume: 21, Issue:17

    Topics: 5-Methylcytosine; Base Sequence; Cytosine; DNA; DNA-Directed RNA Polymerases; Glycosylation

2011
Bioorthogonal labeling of 5-hydroxymethylcytosine in genomic DNA and diazirine-based DNA photo-cross-linking probes.
    Accounts of chemical research, 2011, Sep-20, Volume: 44, Issue:9

    Topics: 5-Methylcytosine; Animals; Azides; Biotin; Cell Line; Click Chemistry; Cross-Linking Reagents; Cytosine; Diazomethane; DNA; DNA Probes; Genome; Glucosyltransferases; Humans; Mice; Streptavidin; Ultraviolet Rays

2011
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells.
    Nature, 2011, May-19, Volume: 473, Issue:7347

    Topics: 5-Methylcytosine; Animals; Biotinylation; Cell Line; Cytosine; DNA Methylation; Embryonic Stem Cells; Exons; Gene Expression Regulation, Developmental; Genome; Glucose; Mice; Periodic Acid; Promoter Regions, Genetic; Sequence Analysis, DNA; Transcription Initiation Site; Transcription, Genetic

2011
Epigenetics: Tet proteins in the limelight.
    Nature, 2011, May-19, Volume: 473, Issue:7347

    Topics: 5-Methylcytosine; Animals; Chromatin; CpG Islands; Cytosine; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Genome; Mice; Polycomb-Group Proteins; Promoter Regions, Genetic; Proto-Oncogene Proteins; Repressor Proteins; Sin3 Histone Deacetylase and Corepressor Complex; Transcription, Genetic

2011
Tissue-specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomes.
    The Journal of biological chemistry, 2011, Jul-15, Volume: 286, Issue:28

    Topics: 5-Methylcytosine; Animals; Brain; CpG Islands; Cytosine; DNA Methylation; Embryonic Stem Cells; Genome, Human; HeLa Cells; Humans; Mice; Myocardium; NIH 3T3 Cells; Organ Specificity

2011
Genomic 5-hydroxymethylcytosine levels correlate with TET2 mutations and a distinct global gene expression pattern in secondary acute myeloid leukemia.
    Leukemia, 2011, Volume: 25, Issue:10

    Topics: 5-Methylcytosine; Cytosine; Dioxygenases; DNA-Binding Proteins; Gene Expression Profiling; Humans; In Situ Hybridization, Fluorescence; Leukemia, Myeloid, Acute; Mutation; Proto-Oncogene Proteins

2011
Syntheses of 5-formyl- and 5-carboxyl-dC containing DNA oligos as potential oxidation products of 5-hydroxymethylcytosine in DNA.
    Organic letters, 2011, Jul-01, Volume: 13, Issue:13

    Topics: 5-Methylcytosine; Cytosine; Deoxycytidine; DNA; Methylation; Molecular Structure; Oligonucleotides; Oxidation-Reduction

2011
Detection of 5-hydroxymethylcytosine in DNA by transferring a keto-glucose by using T4 phage β-glucosyltransferase.
    Chembiochem : a European journal of chemical biology, 2011, Jul-25, Volume: 12, Issue:11

    Topics: 5-Methylcytosine; Bacteriophage T4; Cytosine; DNA; Glucose; Glucosyltransferases; Humans

2011
5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells.
    Genome biology, 2011, Jun-20, Volume: 12, Issue:6

    Topics: 5-Methylcytosine; Base Composition; Binding Sites; Cytosine; Embryonic Stem Cells; Enhancer Elements, Genetic; Gene Expression Regulation, Developmental; Humans; Transcription Factors

2011
Discrimination between 5-hydroxymethylcytosine and 5-methylcytosine by a chemically designed peptide.
    Chemical communications (Cambridge, England), 2011, Aug-07, Volume: 47, Issue:29

    Topics: 5-Methylcytosine; Cytosine; DNA; Electrophoretic Mobility Shift Assay; Oxidation-Reduction; Phosphopeptides; Phosphotyrosine; Protein Kinases; Zinc Fingers

2011
The presence of 5-hydroxymethylcytosine at the gene promoter and not in the gene body negatively regulates gene expression.
    Biochemical and biophysical research communications, 2011, Jul-22, Volume: 411, Issue:1

    Topics: 5-Methylcytosine; Cytosine; Gene Expression Regulation; HeLa Cells; Humans; Promoter Regions, Genetic; Repressor Proteins; RNA Polymerase II; Transcription, Genetic

2011
The discovery of 5-formylcytosine in embryonic stem cell DNA.
    Angewandte Chemie (International ed. in English), 2011, Jul-25, Volume: 50, Issue:31

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; Embryonic Stem Cells; Mass Spectrometry; Mice

2011
Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair.
    Cell, 2011, Jul-08, Volume: 146, Issue:1

    Topics: 5-Methylcytosine; Animals; Cell Cycle Proteins; Cytidine Deaminase; Cytosine; DNA Methylation; Embryonic Development; Female; Gene Expression Regulation, Developmental; Gene Knock-In Techniques; Male; Mice; Mice, Inbred C57BL; Mice, Knockout; Nuclear Proteins; Promoter Regions, Genetic; Thymine DNA Glycosylase; Transcription, Genetic

2011
Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells.
    PLoS genetics, 2011, Volume: 7, Issue:6

    Topics: 5-Methylcytosine; Binding Sites; Cell Line; Chromosome Mapping; Cytosine; DNA Methylation; Embryonic Stem Cells; Epigenomics; Gene Expression Regulation; Gene Library; Genome, Human; Heterochromatin; Histones; Humans; Immunoblotting; Metaphase; Promoter Regions, Genetic; Sequence Alignment; Transcription Factors

2011
Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domain.
    PloS one, 2011, Volume: 6, Issue:6

    Topics: 5-Methylcytosine; Binding Sites; CCAAT-Enhancer-Binding Proteins; CpG Islands; Cytosine; DNA; HEK293 Cells; Humans; Hydrogen Bonding; Molecular Dynamics Simulation; Protein Binding; Protein Structure, Tertiary; Thermodynamics

2011
Inhibition of TET2-mediated conversion of 5-methylcytosine to 5-hydroxymethylcytosine disturbs erythroid and granulomonocytic differentiation of human hematopoietic progenitors.
    Blood, 2011, Sep-01, Volume: 118, Issue:9

    Topics: 5-Methylcytosine; Cell Line, Tumor; Cell Lineage; Colony-Forming Units Assay; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Erythropoiesis; Fetal Blood; Genetic Vectors; Granulocytes; Hematopoietic Stem Cells; Humans; Lentivirus; Monocytes; Mutation; Myelopoiesis; Proto-Oncogene Proteins; RNA Interference; RNA, Small Interfering

2011
Lineage-specific distribution of high levels of genomic 5-hydroxymethylcytosine in mammalian development.
    Cell research, 2011, Volume: 21, Issue:9

    Topics: 5-Methylcytosine; Animals; Antibodies; Bone Marrow; Cell Differentiation; Cell Lineage; Cells, Cultured; CpG Islands; Cytosine; DNA Methylation; Embryonic Development; Embryonic Stem Cells; Genome, Human; Humans; Induced Pluripotent Stem Cells; Intermediate Filament Proteins; Mice; Nerve Tissue Proteins; Nestin; Neurons; Zygote

2011
Tet1 and 5-hydroxymethylation: a genome-wide view in mouse embryonic stem cells.
    Cell cycle (Georgetown, Tex.), 2011, Aug-01, Volume: 10, Issue:15

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; CpG Islands; Cytosine; DNA Methylation; DNA-Binding Proteins; Embryonic Development; Embryonic Stem Cells; Epigenesis, Genetic; Gene Expression Profiling; Genome; Mice; Proto-Oncogene Proteins; Transcription, Genetic

2011
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.
    Science (New York, N.Y.), 2011, Sep-02, Volume: 333, Issue:6047

    Topics: 5-Methylcytosine; Animals; Cell Line; Cytosine; Dioxygenases; DNA; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Humans; Mice; Oxidation-Reduction; Proto-Oncogene Proteins; Recombinant Fusion Proteins

2011
Comparative characterization of the PvuRts1I family of restriction enzymes and their application in mapping genomic 5-hydroxymethylcytosine.
    Nucleic acids research, 2011, Volume: 39, Issue:21

    Topics: 5-Methylcytosine; Amino Acid Sequence; Animals; Chromosome Mapping; Conserved Sequence; Cytosine; DNA Cleavage; DNA Restriction Enzymes; Genomics; Molecular Sequence Data; Rats; Substrate Specificity

2011
Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development.
    Cell stem cell, 2011, Aug-05, Volume: 9, Issue:2

    Topics: 5-Methylcytosine; Animals; Animals, Newborn; Body Size; Cytosine; DNA Methylation; DNA-Binding Proteins; Embryo, Mammalian; Embryonic Development; Embryonic Stem Cells; Female; Fertility; Gene Expression Regulation, Developmental; Gene Knockout Techniques; Genetic Complementation Test; Mice; Mice, Inbred C57BL; Pluripotent Stem Cells; Proto-Oncogene Proteins; Tetraploidy

2011
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.
    Science (New York, N.Y.), 2011, Sep-02, Volume: 333, Issue:6047

    Topics: 5-Methylcytosine; Animals; Cell Line; Cytosine; Dioxygenases; DNA; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; HEK293 Cells; Humans; Induced Pluripotent Stem Cells; Mice; Oxidation-Reduction; Proto-Oncogene Proteins; RNA, Small Interfering; Thymine DNA Glycosylase; Transfection

2011
Gene expression profiling: identification of genes with altered expression in Ayu17-449 knockout mice.
    Genetics and molecular research : GMR, 2011, Volume: 10, Issue:3

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; Gene Expression Profiling; Gene Expression Regulation; Genes, Tumor Suppressor; Genome; Mice; Mice, Knockout; NF-kappa B; Oligonucleotide Array Sequence Analysis; Real-Time Polymerase Chain Reaction; Reverse Transcriptase Polymerase Chain Reaction; Tumor Necrosis Factor-alpha

2011
Coordinated methyl-lysine erasure: structural and functional linkage of a Jumonji demethylase domain and a reader domain.
    Current opinion in structural biology, 2011, Volume: 21, Issue:6

    Topics: 5-Methylcytosine; Cytosine; DNA; Histone Demethylases; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Structure-Activity Relationship

2011
Molecular biology. Demystifying DNA demethylation.
    Science (New York, N.Y.), 2011, Sep-02, Volume: 333, Issue:6047

    Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Mice; Oxidation-Reduction; Proto-Oncogene Proteins; Thymine DNA Glycosylase

2011
The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes.
    Nature, 2011, Sep-04, Volume: 477, Issue:7366

    Topics: 5-Methylcytosine; Alleles; Animals; Cellular Reprogramming; Cytosine; Dioxygenases; DNA; DNA Methylation; DNA-Binding Proteins; Embryo, Mammalian; Embryonic Development; Epigenesis, Genetic; Female; Fertility; Gene Expression Regulation, Developmental; Germ Cells; Male; Mice; Octamer Transcription Factor-3; Oocytes; Oxidation-Reduction; Proto-Oncogene Proteins; Zygote

2011
Global 5-hydroxymethylcytosine content is significantly reduced in tissue stem/progenitor cell compartments and in human cancers.
    Oncotarget, 2011, Volume: 2, Issue:8

    Topics: 5-Methylcytosine; Adenocarcinoma; Animals; Breast Neoplasms; Carcinoma, Ductal, Breast; Cell Differentiation; Colonic Neoplasms; Cytosine; Down-Regulation; Embryo, Mammalian; Female; Gestational Age; HEK293 Cells; Humans; Immunohistochemistry; Male; Mice; Mice, Inbred C57BL; Prostatic Neoplasms; Stem Cells

2011
5-Hydroxymethylcytosine-selective oxidation with peroxotungstate.
    Chemical communications (Cambridge, England), 2011, Oct-28, Volume: 47, Issue:40

    Topics: 5-Methylcytosine; Base Sequence; Cytosine; DNA, Single-Stranded; Oxidation-Reduction; Substrate Specificity; Tungsten Compounds

2011
Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos.
    Science (New York, N.Y.), 2011, Oct-14, Volume: 334, Issue:6053

    Topics: 5-Methylcytosine; Animals; Blastocyst; Chromatids; Chromosomes, Mammalian; Cytosine; Dioxygenases; DNA Replication; DNA-Binding Proteins; Embryonic Development; Mice; Mitosis; Proto-Oncogene Proteins; Sister Chromatid Exchange; Zygote

2011
5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging.
    Nature neuroscience, 2011, Oct-30, Volume: 14, Issue:12

    Topics: 5-Methylcytosine; Aging; Analysis of Variance; Animals; Animals, Newborn; Cerebellum; Chromosome Deletion; Chromosome Mapping; Cytosine; Disease Models, Animal; DNA Methylation; Epigenomics; Gene Expression Regulation, Developmental; Hippocampus; Humans; Immunoprecipitation; Methyl-CpG-Binding Protein 2; Mice; Mice, Inbred C57BL; Mice, Transgenic; Molecular Sequence Data; Organ Specificity; Phosphopyruvate Hydratase; Rett Syndrome; X Chromosome

2011
Growth arrest and DNA-damage-inducible, beta (GADD45b)-mediated DNA demethylation in major psychosis.
    Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology, 2012, Volume: 37, Issue:2

    Topics: 5-Methylcytosine; Adult; Antigens, Differentiation; Brain-Derived Neurotrophic Factor; Case-Control Studies; Cytosine; DNA Methylation; Female; Gene Expression; Humans; Male; Middle Aged; Parietal Lobe; Prefrontal Cortex; Promoter Regions, Genetic; Psychotic Disorders

2012
5-Hydroxymethylcytosine is strongly depleted in human cancers but its levels do not correlate with IDH1 mutations.
    Cancer research, 2011, Dec-15, Volume: 71, Issue:24

    Topics: 5-Methylcytosine; Animals; Base Sequence; Brain; Brain Neoplasms; Carcinoma, Squamous Cell; Cell Line, Tumor; Chromatography, Liquid; Cytosine; DNA-Binding Proteins; DNA, Neoplasm; Female; Gene Expression Regulation, Neoplastic; HEK293 Cells; Humans; Immunohistochemistry; Isocitrate Dehydrogenase; Lung Neoplasms; Male; Mice; Mixed Function Oxygenases; Molecular Structure; Mutation; Neoplasms; Proto-Oncogene Proteins; Reverse Transcriptase Polymerase Chain Reaction

2011
Improved synthesis and mutagenicity of oligonucleotides containing 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxylcytosine.
    Chemistry (Weinheim an der Bergstrasse, Germany), 2011, Dec-02, Volume: 17, Issue:49

    Topics: 5-Methylcytosine; Chromatography, High Pressure Liquid; Cytosine; DNA Methylation; Molecular Structure; Mutagens; Oligonucleotides; Organophosphorus Compounds; Spectrometry, Mass, Electrospray Ionization

2011
Epigenetic regulation of motor neuron cell death through DNA methylation.
    The Journal of neuroscience : the official journal of the Society for Neuroscience, 2011, Nov-16, Volume: 31, Issue:46

    Topics: 5-Methylcytosine; Age Factors; Amyloid Precursor Protein Secretases; Amyotrophic Lateral Sclerosis; Animals; Apoptosis; Aspartic Acid Endopeptidases; Camptothecin; Caspase 3; Cell Line, Transformed; Central Nervous System; Cytosine; Disease Models, Animal; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3A; Enzyme Inhibitors; Epigenomics; Gene Expression Regulation, Developmental; Green Fluorescent Proteins; Humans; Indoles; Mice; Mice, Transgenic; Motor Neurons; Mutation; Phthalimides; Propionates; RNA, Small Interfering; Sciatic Neuropathy; Superoxide Dismutase; Transfection; Tryptophan; Up-Regulation

2011
Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine.
    Nature methods, 2011, Nov-20, Volume: 9, Issue:1

    Topics: 5-Methylcytosine; Base Sequence; Cytosine; DNA; Sensitivity and Specificity; Sequence Analysis, DNA

2011
Tissue type is a major modifier of the 5-hydroxymethylcytosine content of human genes.
    Genome research, 2012, Volume: 22, Issue:3

    Topics: 5-Methylcytosine; Animals; Cell Line; Cells, Cultured; Chromosome Mapping; Cluster Analysis; Cytosine; DNA; DNA Methylation; Embryonic Stem Cells; Epigenesis, Genetic; Gene Expression Profiling; Gene Expression Regulation; Genetic Loci; Humans; Mice; Nuclear Proteins; Organ Specificity; Promoter Regions, Genetic; RNA-Binding Proteins; Transcription, Genetic

2012
Methylation on the mind.
    Nature neuroscience, 2011, Nov-23, Volume: 14, Issue:12

    Topics: 5-Methylcytosine; Aging; Animals; Cerebellum; Cytosine; Epigenomics; Gene Expression Regulation, Developmental; Hippocampus; Humans

2011
Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development.
    Cell research, 2011, Volume: 21, Issue:12

    Topics: 5-Methylcytosine; Animals; Antibodies; Cytosine; DNA Replication; DNA-Directed DNA Polymerase; Embryonic Development; Immunohistochemistry; Male; Mice

2011
The hunt for 5-hydroxymethylcytosine: the sixth base.
    Epigenomics, 2011, Volume: 3, Issue:5

    Topics: 5-Methylcytosine; Cytosine; Dioxygenases; Epigenesis, Genetic; Sequence Analysis, DNA

2011
5-Hydroxymethylcytosine: a new kid on the epigenetic block?
    Molecular systems biology, 2011, Dec-20, Volume: 7

    Topics: 5-Methylcytosine; Animals; Cell Line; Chromatin; Cluster Analysis; Cytosine; DNA Methylation; Embryonic Stem Cells; Epigenesis, Genetic; Gene Expression Regulation; Humans; Mice; Oxygenases; Transcription, Genetic; Translocation, Genetic

2011
Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells.
    Cell, 2011, Dec-23, Volume: 147, Issue:7

    Topics: 5-Methylcytosine; Animals; Chromatin Assembly and Disassembly; Cytosine; DNA Helicases; DNA-Binding Proteins; Embryonic Stem Cells; Gene Knockdown Techniques; Humans; Mi-2 Nucleosome Remodeling and Deacetylase Complex; Mice; Nuclear Proteins; Proto-Oncogene Proteins; RNA Polymerase II; Transcription Factors

2011
Tracking genomic hydroxymethylation by the base.
    Nature methods, 2011, Dec-28, Volume: 9, Issue:1

    Topics: 5-Methylcytosine; Cytosine; DNA; Sequence Analysis, DNA

2011
Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity.
    Nucleic acids research, 2012, Volume: 40, Issue:8

    Topics: 5-Methylcytosine; Animals; Cells, Cultured; Cytosine; DNA (Cytosine-5-)-Methyltransferases; DNA Methyltransferase 3B; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Profiling; Gene Expression Regulation; Homeodomain Proteins; Leukemia Inhibitory Factor; MAP Kinase Signaling System; Mice; Nanog Homeobox Protein; Proto-Oncogene Proteins; RNA Interference; Signal Transduction; STAT3 Transcription Factor

2012
Biochemical characterization of recombinant β-glucosyltransferase and analysis of global 5-hydroxymethylcytosine in unique genomes.
    Biochemistry, 2012, Feb-07, Volume: 51, Issue:5

    Topics: 5-Methylcytosine; Animals; Arabidopsis Proteins; Bacteriophage T4; Cattle; Cytosine; Deoxyribonucleases, Type II Site-Specific; Escherichia coli; Escherichia coli Proteins; Female; Genome, Plant; Genome, Viral; Glucosyltransferases; HCT116 Cells; HEK293 Cells; Humans; Male; Mice; NIH 3T3 Cells; Rats; Recombinant Proteins; Substrate Specificity

2012
Low values of 5-hydroxymethylcytosine (5hmC), the "sixth base," are associated with anaplasia in human brain tumors.
    International journal of cancer, 2012, Oct-01, Volume: 131, Issue:7

    Topics: 5-Methylcytosine; Adolescent; Adult; Aged; Aged, 80 and over; Anaplasia; Astrocytoma; Brain; Brain Neoplasms; Cerebral Cortex; Child; Child, Preschool; Cytosine; DNA; Epigenesis, Genetic; Female; Humans; Isocitrate Dehydrogenase; Male; Middle Aged; Mutation; Young Adult

2012
The involvement of 5-hydroxymethylcytosine in active DNA demethylation in mice.
    Biology of reproduction, 2012, Volume: 86, Issue:4

    Topics: 5-Methylcytosine; Animals; Blastocyst; Cytosine; DNA; DNA Methylation; Embryo, Mammalian; Gene Expression Regulation, Developmental; Metaphase; Mice; Oocytes; Plasmids

2012
Age-related increase in levels of 5-hydroxymethylcytosine in mouse hippocampus is prevented by caloric restriction.
    Current Alzheimer research, 2012, Volume: 9, Issue:5

    Topics: 5-Methylcytosine; Age Factors; Animals; Caloric Restriction; Cytosine; DNA Methyltransferase 3A; Gene Expression Regulation; Hippocampus; Male; Mice; Mice, Inbred C57BL; Mice, Transgenic; Superoxide Dismutase; Superoxide Dismutase-1; Tissue Distribution

2012
The role of 5-hydroxymethylcytosine in aging and Alzheimer's disease: current status and prospects for future studies.
    Current Alzheimer research, 2012, Volume: 9, Issue:5

    Topics: 5-Methylcytosine; Aging; Alzheimer Disease; Animals; Cytosine; Disease Models, Animal; DNA Methylation; Epigenesis, Genetic; Humans; Translocation, Genetic

2012
Pull-down of 5-hydroxymethylcytosine DNA using JBP1-coated magnetic beads.
    Nature protocols, 2012, Jan-26, Volume: 7, Issue:2

    Topics: 5-Methylcytosine; Cytosine; DNA; DNA-Binding Proteins; Escherichia coli; Escherichia coli Proteins; Glucosyltransferases; Magnetic Phenomena; Microspheres

2012
Loss of 5-hydroxymethylcytosine is accompanied with malignant cellular transformation.
    Cancer science, 2012, Volume: 103, Issue:4

    Topics: 5-Methylcytosine; Cell Line, Tumor; Cell Transformation, Neoplastic; Colorectal Neoplasms; Cytosine; DNA Methylation; DNA-Binding Proteins; Gene Knockdown Techniques; Humans; Mixed Function Oxygenases; Mutation; Neoplasms; Proto-Oncogene Proteins; Stomach Neoplasms

2012
TET2 mutations are associated with specific 5-methylcytosine and 5-hydroxymethylcytosine profiles in patients with chronic myelomonocytic leukemia.
    PloS one, 2012, Volume: 7, Issue:2

    Topics: 5-Methylcytosine; Computational Biology; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Humans; Isocitrate Dehydrogenase; Janus Kinase 2; Leukemia, Myelomonocytic, Chronic; Mutation; Oligonucleotide Array Sequence Analysis; Polycomb Repressive Complex 2; Proto-Oncogene Proteins; Transcription Factors

2012
Recognition and potential mechanisms for replication and erasure of cytosine hydroxymethylation.
    Nucleic acids research, 2012, Volume: 40, Issue:11

    Topics: 5-Methylcytosine; Cytosine; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Replication; DNA-Binding Proteins; Humans; Pentoxyl; Thymine DNA Glycosylase

2012
Tumor development is associated with decrease of TET gene expression and 5-methylcytosine hydroxylation.
    Oncogene, 2013, Jan-31, Volume: 32, Issue:5

    Topics: 5-Methylcytosine; Animals; Biomarkers, Tumor; Cell Transformation, Neoplastic; Cytosine; Dioxygenases; DNA-Binding Proteins; Down-Regulation; Humans; Hydroxylation; Mice; Mixed Function Oxygenases; Neoplasms; Proto-Oncogene Proteins

2013
Semi-quantitative immunohistochemical detection of 5-hydroxymethyl-cytosine reveals conservation of its tissue distribution between amphibians and mammals.
    Epigenetics, 2012, Volume: 7, Issue:2

    Topics: 5-Methylcytosine; Ambystoma mexicanum; Amphibians; Animals; Chickens; Cytosine; DNA-Binding Proteins; Humans; Immunohistochemistry; Mammals; Mice; Phylogeny; Tissue Distribution; Xenopus; Zebrafish

2012
5-hydroxymethyl-cytosine enrichment of non-committed cells is not a universal feature of vertebrate development.
    Epigenetics, 2012, Volume: 7, Issue:4

    Topics: 5-Methylcytosine; Animals; Blastocyst; Cell Differentiation; Chick Embryo; Culture Media, Conditioned; Cytosine; DNA Methylation; DNA-Binding Proteins; Embryo, Nonmammalian; Embryonic Development; Embryonic Stem Cells; Female; Gene Expression Regulation, Developmental; Immunohistochemistry; Male; Mice; Organogenesis; Proto-Oncogene Proteins; Time Factors; Vertebrates; Zebrafish

2012
Effect of aging on 5-hydroxymethylcytosine in the mouse hippocampus.
    Restorative neurology and neuroscience, 2012, Volume: 30, Issue:3

    Topics: 5-Methylcytosine; Aging; Alzheimer Disease; Animals; Arachidonate 5-Lipoxygenase; Cytosine; Disease Models, Animal; DNA Methylation; Epigenesis, Genetic; Hippocampus; Male; Mice; Mice, Inbred C57BL; Up-Regulation

2012
Effect of aging on 5-hydroxymethylcytosine in brain mitochondria.
    Neurobiology of aging, 2012, Volume: 33, Issue:12

    Topics: 5-Methylcytosine; Age Factors; Aging; Analysis of Variance; Animals; Animals, Newborn; Brain; Cells, Cultured; Cytosine; Dioxygenases; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA-Binding Proteins; DNA, Mitochondrial; Enzyme-Linked Immunosorbent Assay; Gene Expression Regulation, Developmental; Laser Capture Microdissection; Male; Methyltransferases; Mice; Mice, Inbred C57BL; Mitochondria; Neurons; Proto-Oncogene Proteins

2012
Heterologous expression and purification of Arabidopsis thaliana VIM1 protein: in vitro evidence for its inability to recognize hydroxymethylcytosine, a rare base in Arabidopsis DNA.
    Protein expression and purification, 2012, Volume: 83, Issue:1

    Topics: 5-Methylcytosine; Arabidopsis Proteins; Cytosine; DNA Methylation; DNA-Binding Proteins; DNA, Plant; Electrophoresis, Polyacrylamide Gel; Electrophoretic Mobility Shift Assay; Escherichia coli; Models, Molecular; Protein Binding; Recombinant Proteins; Spectrometry, Fluorescence; Substrate Specificity

2012
DMSO is a strong inducer of DNA hydroxymethylation in pre-osteoblastic MC3T3-E1 cells.
    Epigenetics, 2012, Jun-01, Volume: 7, Issue:6

    Topics: 5-Methylcytosine; Animals; Cell Cycle Proteins; Cell Line; Cytosine; Dimethyl Sulfoxide; DNA (Cytosine-5-)-Methyltransferases; DNA Helicases; DNA Methylation; DNA Methyltransferase 3B; DNA-Binding Proteins; Homeodomain Proteins; Mice; Nuclear Proteins; Osteoblasts; Proto-Oncogene Proteins; Repressor Proteins; Stem Cells; Transcription, Genetic

2012
Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution.
    Science (New York, N.Y.), 2012, May-18, Volume: 336, Issue:6083

    Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; DNA; DNA Methylation; Embryonic Stem Cells; Epigenesis, Genetic; Genes, Intracisternal A-Particle; High-Throughput Nucleotide Sequencing; Long Interspersed Nucleotide Elements; Mice; Oxidation-Reduction; Rhenium; Sequence Analysis, DNA; Sulfites; Transcription, Genetic; Uracil

2012
Hydroxylation of 5-methylcytosine by TET2 maintains the active state of the mammalian HOXA cluster.
    Nature communications, 2012, May-08, Volume: 3

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cell Line; Cytosine; Dioxygenases; DNA-Binding Proteins; Embryonic Stem Cells; Homeodomain Proteins; Humans; Hydroxylation; Mice; Mice, Knockout; Proto-Oncogene Proteins

2012
Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.
    Cell, 2012, Jun-08, Volume: 149, Issue:6

    Topics: 5-Methylcytosine; Animals; Cytosine; Embryonic Stem Cells; Epigenomics; Gene Expression Regulation; Genome-Wide Association Study; Genome, Human; Humans; Mice; Sequence Analysis, DNA

2012
Reduction of DNA hydroxymethylation in the mouse kidney insulted by ischemia reperfusion.
    Biochemical and biophysical research communications, 2012, Jun-15, Volume: 422, Issue:4

    Topics: 5-Methylcytosine; Animals; Chemokine CXCL10; Cytosine; Dioxygenases; Disease Models, Animal; DNA Methylation; DNA-Binding Proteins; Gene Expression Regulation; Kidney; Male; Mice; Mice, Inbred C57BL; Proto-Oncogene Proteins; Receptors, Interferon; Reperfusion Injury

2012
Simultaneous determination of global DNA methylation and hydroxymethylation levels by hydrophilic interaction liquid chromatography-tandem mass spectrometry.
    Journal of biomolecular screening, 2012, Volume: 17, Issue:7

    Topics: 5-Methylcytosine; Animals; Chromatography, Liquid; Cytosine; DNA; DNA Methylation; Hydrophobic and Hydrophilic Interactions; Limit of Detection; Tandem Mass Spectrometry

2012
Nuclear exclusion of TET1 is associated with loss of 5-hydroxymethylcytosine in IDH1 wild-type gliomas.
    The American journal of pathology, 2012, Volume: 181, Issue:2

    Topics: 5-Methylcytosine; Brain Neoplasms; Cell Line, Tumor; Cell Nucleus; Cytosine; Dioxygenases; DNA Methylation; DNA Modification Methylases; DNA Repair Enzymes; DNA-Binding Proteins; Dual-Specificity Phosphatases; Female; Gene Expression Regulation, Enzymologic; Glioblastoma; Glioma; Humans; Immunohistochemistry; Isocitrate Dehydrogenase; Male; Mitogen-Activated Protein Kinase Phosphatases; Mixed Function Oxygenases; Mutation; Proto-Oncogene Proteins; Real-Time Polymerase Chain Reaction; RNA, Messenger; Sequence Analysis, DNA; Subcellular Fractions; Tumor Suppressor Proteins

2012
5-Methylcytosine and 5-hydroxymethylcytosine spatiotemporal profiles in the mouse zygote.
    PloS one, 2012, Volume: 7, Issue:5

    Topics: 5-Methylcytosine; Animals; Cell Cycle; Cytosine; DNA Methylation; DNA Replication; Female; Heterochromatin; Male; Mice; Time Factors; Zygote

2012
PGC7 binds histone H3K9me2 to protect against conversion of 5mC to 5hmC in early embryos.
    Nature, 2012, Jun-03, Volume: 486, Issue:7403

    Topics: 5-Methylcytosine; Animals; Chromatin; Chromosomal Proteins, Non-Histone; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryo, Mammalian; Embryonic Development; Female; Genomic Imprinting; Histones; Lysine; Male; Methylation; Mice; Protein Binding; Proto-Oncogene Proteins; ras-GRF1; Repressor Proteins; RNA, Long Noncoding; RNA, Untranslated; Spermatozoa

2012
Effect of valproic acid on mitochondrial epigenetics.
    European journal of pharmacology, 2012, Sep-05, Volume: 690, Issue:1-3

    Topics: 3T3-L1 Cells; 5-Methylcytosine; Animals; Anticonvulsants; Base Sequence; Benzamides; Cell Nucleus; Cytosine; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA, Mitochondrial; Epigenesis, Genetic; Mice; Mitochondria; Molecular Sequence Data; Pyridines; RNA, Messenger; Valproic Acid

2012
Dynamic hydroxymethylation of deoxyribonucleic acid marks differentiation-associated enhancers.
    Nucleic acids research, 2012, Sep-01, Volume: 40, Issue:17

    Topics: 3T3-L1 Cells; 5-Methylcytosine; Animals; Binding Sites; Cell Differentiation; Cell Line, Tumor; Chromatin; Cytosine; DNA Methylation; DNA-Binding Proteins; Enhancer Elements, Genetic; Homeodomain Proteins; Mice; Myeloid Ecotropic Viral Integration Site 1 Protein; Neoplasm Proteins; Neurogenesis; Proto-Oncogene Proteins; Transcription Factors

2012
Behavioral and neurobiological effects of prenatal stress exposure in male and female APPswe/PS1dE9 mice.
    Neurobiology of aging, 2013, Volume: 34, Issue:1

    Topics: 5-Methylcytosine; Alzheimer Disease; Amyloid beta-Protein Precursor; Animals; Behavioral Symptoms; Benzofurans; Cognition Disorders; Cytosine; Disease Models, Animal; DNA (Cytosine-5-)-Methyltransferases; DNA Methyltransferase 3A; Female; Hippocampus; Humans; Male; Memory Disorders; Mice; Mice, Transgenic; Pregnancy; Prenatal Exposure Delayed Effects; Presenilin-1; Quinolines; Space Perception; Stress, Psychological

2013
Decreased 5-hydroxymethylcytosine is associated with neural progenitor phenotype in normal brain and shorter survival in malignant glioma.
    PloS one, 2012, Volume: 7, Issue:7

    Topics: 5-Methylcytosine; Brain; Cell Differentiation; Cytosine; Glioma; Humans; Immunohistochemistry; Neurons; Stem Cells

2012
Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA.
    Nucleic acids research, 2012, Volume: 40, Issue:19

    Topics: 5-Methylcytosine; Bacteria; Catalytic Domain; Cytosine; DNA; Endodeoxyribonucleases; Humans; Models, Molecular; Pentoxyl; Protein Structure, Tertiary; Substrate Specificity; Thymine; Thymine DNA Glycosylase

2012
New sequencing technique produces high-resolution map of 5-hydroxymethylcytosine.
    Epigenomics, 2012, Volume: 4, Issue:3

    Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; DNA; Embryonic Stem Cells; Epigenesis, Genetic; Mice; Nucleotide Mapping; Rhenium; Sequence Analysis, DNA

2012
Differential effect of three base modifications on DNA thermostability revealed by high resolution melting.
    Analytical chemistry, 2012, Sep-04, Volume: 84, Issue:17

    Topics: 5-Methylcytosine; Adenine; Cluster Analysis; Cytosine; DNA; Nucleic Acid Denaturation; Phase Transition; Principal Component Analysis; Transition Temperature

2012
Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase.
    Genome biology, 2012, Aug-17, Volume: 13, Issue:8

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cell Line; Chromosome Mapping; Computational Biology; CpG Islands; Cytosine; Dioxygenases; DNA Repair; DNA-Binding Proteins; Down-Regulation; Embryonic Stem Cells; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Genome; High-Throughput Nucleotide Sequencing; Mice; Promoter Regions, Genetic; Proto-Oncogene Proteins; Thymine DNA Glycosylase; Transcription, Genetic

2012
CpG site-specific alteration of hydroxymethylcytosine to methylcytosine beyond DNA replication.
    Biochemical and biophysical research communications, 2012, Sep-14, Volume: 426, Issue:1

    Topics: 5-Methylcytosine; Base Sequence; CpG Islands; Cytosine; DNA Methylation; DNA Replication; Genetic Vectors; HEK293 Cells; Humans; Polymerase Chain Reaction

2012
[Analysis of global deoxyribonucleic acid 5-hydroxymethylcytosine in tissue by liquid chromatography-tandem mass spectrometry].
    Se pu = Chinese journal of chromatography, 2012, Volume: 30, Issue:5

    Topics: 5-Methylcytosine; Animals; Brain Chemistry; Chromatography, Liquid; Cytosine; DNA; DNA Methylation; Rats; Tandem Mass Spectrometry

2012
5-hmC in the brain is abundant in synaptic genes and shows differences at the exon-intron boundary.
    Nature structural & molecular biology, 2012, Volume: 19, Issue:10

    Topics: 5-Methylcytosine; Alternative Splicing; Animals; Brain; Cell Line; Cytosine; Glucosyltransferases; Humans; Introns; Male; Mice; Mice, Inbred C57BL; Microarray Analysis; Organ Specificity; Reproducibility of Results; RNA Splicing; Synapses

2012
Loss of 5-hydroxymethylcytosine is an epigenetic hallmark of melanoma.
    Cell, 2012, Sep-14, Volume: 150, Issue:6

    Topics: 5-Methylcytosine; Cytosine; Dioxygenases; DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Genome-Wide Association Study; Humans; Isocitrate Dehydrogenase; Melanocytes; Melanoma; Nevus; Proto-Oncogene Proteins

2012
Sequencing the sixth base (5-hydroxymethylcytosine): selective DNA oxidation enables base-pair resolution.
    Angewandte Chemie (International ed. in English), 2012, Oct-22, Volume: 51, Issue:43

    Topics: 5-Methylcytosine; Base Pairing; Cytosine; Deamination; DNA; Oxidation-Reduction; Sequence Analysis, DNA; Sulfites

2012
The anti-CMS technique for genome-wide mapping of 5-hydroxymethylcytosine.
    Nature protocols, 2012, Volume: 7, Issue:10

    Topics: 5-Methylcytosine; Antibodies; Base Sequence; Cytosine; DNA Primers; Genomics; Immunoprecipitation; Molecular Sequence Data; Sulfites

2012
The GLIB technique for genome-wide mapping of 5-hydroxymethylcytosine.
    Nature protocols, 2012, Volume: 7, Issue:10

    Topics: 5-Methylcytosine; Base Sequence; Biotinylation; Cytosine; Genomics; Glucose; Molecular Sequence Data; Oxidation-Reduction; Periodic Acid

2012
Non-genotoxic carcinogen exposure induces defined changes in the 5-hydroxymethylome.
    Genome biology, 2012, Oct-03, Volume: 13, Issue:10

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Epigenomics; Gene Expression Profiling; Gene Expression Regulation; Histones; Liver; Male; Mice; Mice, Inbred C57BL; Oligonucleotide Array Sequence Analysis; Phenobarbital; Promoter Regions, Genetic

2012
Genome-wide DNA hydroxymethylation changes are associated with neurodevelopmental genes in the developing human cerebellum.
    Human molecular genetics, 2012, Dec-15, Volume: 21, Issue:26

    Topics: 5-Methylcytosine; Adult; Cerebellum; CpG Islands; Cytosine; DNA; DNA Methylation; DNA, Intergenic; Epigenesis, Genetic; Female; Fragile X Mental Retardation Protein; Gene Expression Profiling; Gene Expression Regulation, Developmental; Genome-Wide Association Study; Genome, Human; Genomics; Humans; Male; RNA, Messenger; Sequence Alignment

2012
Selective capture of 5-hydroxymethylcytosine from genomic DNA.
    Journal of visualized experiments : JoVE, 2012, Oct-05, Issue:68

    Topics: 5-Methylcytosine; Cytosine; DNA; Genome, Human; Humans

2012
Balance of DNA methylation and demethylation in cancer development.
    Genome biology, 2012, Oct-23, Volume: 13, Issue:10

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Liver; Male; Phenobarbital

2012
Chromosome-wide regulation of euchromatin-specific 5mC to 5hmC conversion in mouse ES cells and female human somatic cells.
    Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2012, Volume: 20, Issue:7

    Topics: 5-Methylcytosine; Animals; Bromodeoxyuridine; Cell Line; Chromosomes, Human, X; Cytosine; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; Embryonic Stem Cells; Epigenesis, Genetic; Euchromatin; Female; Gene Deletion; Gene Expression Regulation; Gene Silencing; Genetic Markers; Genomic Imprinting; Heterochromatin; Histones; Humans; In Situ Hybridization, Fluorescence; Male; Mice; Retroelements; Sequence Analysis, DNA

2012
Association of modified cytosines and the methylated DNA-binding protein MeCP2 with distinctive structural domains of lampbrush chromatin.
    Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2012, Volume: 20, Issue:8

    Topics: 5-Methylcytosine; Animals; Chromatin; Chromosomes; Cytosine; DNA; DNA Methylation; Gene Expression Regulation; Humans; Immunoblotting; Methyl-CpG-Binding Protein 2; Mutation; Oocytes; RNA Polymerase II; Sequence Analysis, DNA; Transcription, Genetic; Xenopus laevis

2012
Tet-assisted bisulfite sequencing of 5-hydroxymethylcytosine.
    Nature protocols, 2012, Volume: 7, Issue:12

    Topics: 5-Methylcytosine; Animals; Chromatography, High Pressure Liquid; Cytosine; DNA-Binding Proteins; Glucosyltransferases; Mice; Polymerase Chain Reaction; Proto-Oncogene Proteins; Sequence Analysis, DNA; Sulfites

2012
Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine.
    Science (New York, N.Y.), 2013, Jan-25, Volume: 339, Issue:6118

    Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryo, Mammalian; Embryonic Development; Epigenesis, Genetic; Female; Genomic Imprinting; Germ Cells; Germ Layers; Male; Mice; Promoter Regions, Genetic; Proto-Oncogene Proteins; RNA-Binding Proteins

2013
Oct4 and the small molecule inhibitor, SC1, regulates Tet2 expression in mouse embryonic stem cells.
    Molecular biology reports, 2013, Volume: 40, Issue:4

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cell Line; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Regulation, Developmental; Mice; Octamer Transcription Factor-3; Proto-Oncogene Proteins; Pyrazoles; Pyrimidines

2013
MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system.
    Cell, 2012, Dec-21, Volume: 151, Issue:7

    Topics: 5-Methylcytosine; Animals; Cerebellum; Chromatin; Cytosine; Epigenesis, Genetic; Humans; Methyl-CpG-Binding Protein 2; Mice; Mice, Knockout; Neuroglia; Neurons; Purkinje Cells; Rett Syndrome

2012
Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4.
    The Journal of biological chemistry, 2013, Mar-01, Volume: 288, Issue:9

    Topics: 5-Methylcytosine; Animals; Crystallography, X-Ray; Cytosine; DNA Methylation; Endodeoxyribonucleases; Humans; Mice; Protein Structure, Tertiary; Structure-Activity Relationship

2013
Quantification of 5-methylcytosine and 5-hydroxymethylcytosine in genomic DNA from hepatocellular carcinoma tissues by capillary hydrophilic-interaction liquid chromatography/quadrupole TOF mass spectrometry.
    Clinical chemistry, 2013, Volume: 59, Issue:5

    Topics: 5-Methylcytosine; Biomarkers; Carcinoma, Hepatocellular; Chromatography, Liquid; Cytosine; DNA Methylation; DNA, Neoplasm; Humans; Limit of Detection; Liver Neoplasms; Sequence Analysis, DNA; Tandem Mass Spectrometry

2013
High-resolution enzymatic mapping of genomic 5-hydroxymethylcytosine in mouse embryonic stem cells.
    Cell reports, 2013, Feb-21, Volume: 3, Issue:2

    Topics: 5-Methylcytosine; Animals; Cell Line; Chromosome Mapping; Computational Biology; CpG Islands; Cytosine; DNA Methylation; DNA Restriction Enzymes; Embryonic Stem Cells; Genomics; Histones; Hydroxylation; Mice; Sequence Analysis, DNA

2013
Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development.
    Developmental cell, 2013, Feb-11, Volume: 24, Issue:3

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryonic Development; Embryonic Stem Cells; Epigenesis, Genetic; Female; Fertility; Gene Expression Regulation, Developmental; Gene Knockout Techniques; Genomic Imprinting; Humans; Hydroxylation; Male; Mice; Proto-Oncogene Proteins

2013
TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS.
    The EMBO journal, 2013, Mar-06, Volume: 32, Issue:5

    Topics: 5-Methylcytosine; Amino Acid Sequence; Animals; Blotting, Western; Cell Proliferation; Cells, Cultured; Chromatin Immunoprecipitation; CpG Islands; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression Regulation; Glycosylation; Histone-Lysine N-Methyltransferase; Histones; Host Cell Factor C1; Humans; Immunoprecipitation; Mice; Mice, Knockout; Molecular Sequence Data; N-Acetylglucosaminyltransferases; Promoter Regions, Genetic; Proto-Oncogene Proteins; Transcription, Genetic

2013
Increased 5-methylcytosine and decreased 5-hydroxymethylcytosine levels are associated with reduced striatal A2AR levels in Huntington's disease.
    Neuromolecular medicine, 2013, Volume: 15, Issue:2

    Topics: 5-Methylcytosine; 5' Untranslated Regions; Adult; Aged; Aged, 80 and over; Animals; Corpus Striatum; Cytosine; Disease Models, Animal; Disease Progression; DNA Methylation; Down-Regulation; Female; Gene Expression Regulation; Humans; Huntingtin Protein; Huntington Disease; Male; Mice; Mice, Transgenic; Middle Aged; Nerve Tissue Proteins; Putamen; Receptor, Adenosine A2A

2013
Dynamics of 5-methylcytosine and 5-hydroxymethylcytosine during germ cell reprogramming.
    Cell research, 2013, Volume: 23, Issue:3

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; Genomic Imprinting; Germ Cells; Heterochromatin; Male; Mice

2013
Dynamics of 5-hydroxymethylcytosine and chromatin marks in Mammalian neurogenesis.
    Cell reports, 2013, Feb-21, Volume: 3, Issue:2

    Topics: 5-Methylcytosine; Animals; Cells, Cultured; Chromatin; Cytosine; DNA Methylation; Enhancer of Zeste Homolog 2 Protein; Epigenomics; Histones; Mice; Neurogenesis; Neurons; Oxidation-Reduction; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Promoter Regions, Genetic; Repressor Proteins; RNA Interference; RNA, Small Interfering

2013
A sweet TET-à-tête-synergy of TET proteins and O-GlcNAc transferase in transcription.
    The EMBO journal, 2013, Mar-06, Volume: 32, Issue:5

    Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression Regulation; Humans; Mixed Function Oxygenases; N-Acetylglucosaminyltransferases; Proto-Oncogene Proteins; Transcription, Genetic

2013
Genome-wide comparison of DNA hydroxymethylation in mouse embryonic stem cells and neural progenitor cells by a new comparative hMeDIP-seq method.
    Nucleic acids research, 2013, Volume: 41, Issue:7

    Topics: 5-Methylcytosine; Animals; Cell Lineage; Cells, Cultured; Cytosine; DNA Methylation; Embryonic Stem Cells; Gene Expression; Genome; High-Throughput Nucleotide Sequencing; Immunoprecipitation; Mice; Neural Stem Cells; Sequence Analysis, DNA

2013
Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells.
    Cell stem cell, 2013, Apr-04, Volume: 12, Issue:4

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Genome; Germ Cells; Green Fluorescent Proteins; Mice; Proto-Oncogene Proteins

2013
Early de novo DNA methylation and prolonged demethylation in the muscle lineage.
    Epigenetics, 2013, Volume: 8, Issue:3

    Topics: 5-Methylcytosine; Adolescent; Adult; Aged; Aged, 80 and over; Cardiac Myosins; Case-Control Studies; CCCTC-Binding Factor; Cell Lineage; Child; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; Genes, Homeobox; Genome, Human; Guanine Nucleotide Exchange Factors; Histones; Humans; Infant, Newborn; Male; Middle Aged; Mixed Function Oxygenases; Muscle Development; Muscle Fibers, Skeletal; Muscle Proteins; Muscular Dystrophy, Facioscapulohumeral; Myoblasts; Myosin Heavy Chains; Paired Box Transcription Factors; PAX3 Transcription Factor; Protein Serine-Threonine Kinases; Proto-Oncogene Proteins; Repressor Proteins; Rho Guanine Nucleotide Exchange Factors; T-Box Domain Proteins; Transcription, Genetic

2013
Decreased 5-hydroxymethylcytosine levels are associated with TET2 mutation and unfavorable overall survival in myelodysplastic syndromes.
    Leukemia & lymphoma, 2013, Volume: 54, Issue:11

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Female; Gene Expression Regulation; Humans; Male; Middle Aged; Mutation; Myelodysplastic Syndromes; Prognosis; Proto-Oncogene Proteins; Young Adult

2013
Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives.
    Cell, 2013, Feb-28, Volume: 152, Issue:5

    Topics: 5-Methylcytosine; Animals; Brain; Cytosine; DNA Glycosylases; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Kruppel-Like Factor 4; Mass Spectrometry; Mice; Oxidation-Reduction; Proto-Oncogene Proteins; Regulatory Factor X Transcription Factors; Stem Cells; Transcription Factors; Ubiquitin-Protein Ligases

2013
Number of manic episodes is associated with elevated DNA oxidation in bipolar I disorder.
    The international journal of neuropsychopharmacology, 2013, Volume: 16, Issue:7

    Topics: 5-Methylcytosine; 8-Hydroxy-2'-Deoxyguanosine; Adolescent; Adult; Bipolar Disorder; Cytosine; Deoxyguanosine; DNA; DNA Methylation; Enzyme-Linked Immunosorbent Assay; Female; Humans; Male; Multivariate Analysis; Oxidation-Reduction; Oxidative Stress; Young Adult

2013
Different roles for Tet1 and Tet2 proteins in reprogramming-mediated erasure of imprints induced by EGC fusion.
    Molecular cell, 2013, Mar-28, Volume: 49, Issue:6

    Topics: 5-Methylcytosine; Animals; B-Lymphocytes; Base Sequence; Cell Fusion; Cell Line; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression; Genomic Imprinting; Germ Cells; Green Fluorescent Proteins; Humans; Insulin-Like Growth Factor II; Mice; Molecular Sequence Data; Octamer Transcription Factor-3; Polymorphism, Single Nucleotide; Proteins; Proto-Oncogene Proteins; RNA, Long Noncoding; Sequence Analysis, DNA

2013
Loss of 5-hydroxymethylcytosine and ten-eleven translocation 2 protein expression in malignant melanoma.
    Melanoma research, 2013, Volume: 23, Issue:3

    Topics: 5-Methylcytosine; Biomarkers, Tumor; Cytosine; Dioxygenases; Disease Progression; DNA-Binding Proteins; Epigenomics; Humans; Melanoma; Paraffin Embedding; Proto-Oncogene Proteins; Skin Neoplasms; Translocation, Genetic

2013
Characterization of the 5-hydroxymethylcytosine-specific DNA restriction endonucleases.
    Nucleic acids research, 2013, Volume: 41, Issue:7

    Topics: 5-Methylcytosine; Bacteriophage T4; Cytosine; DNA Cleavage; DNA Restriction Enzymes; DNA, Viral; Glucosyltransferases; Sequence Homology, Amino Acid; Substrate Specificity

2013
Replacement of Oct4 by Tet1 during iPSC induction reveals an important role of DNA methylation and hydroxymethylation in reprogramming.
    Cell stem cell, 2013, Apr-04, Volume: 12, Issue:4

    Topics: 5-Methylcytosine; Animals; Cellular Reprogramming; Cytosine; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Enhancer Elements, Genetic; Gene Expression Regulation, Developmental; Induced Pluripotent Stem Cells; Kruppel-Like Factor 4; Kruppel-Like Transcription Factors; Mice; Models, Biological; Octamer Transcription Factor-3; Proto-Oncogene Proteins; Proto-Oncogene Proteins c-myc; SOXB1 Transcription Factors; Transcription, Genetic; Transcriptome

2013
Integrated detection of both 5-mC and 5-hmC by high-throughput tag sequencing technology highlights methylation reprogramming of bivalent genes during cellular differentiation.
    Epigenetics, 2013, Volume: 8, Issue:4

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cells, Cultured; Cytosine; DNA Methylation; Embryoid Bodies; Embryonic Stem Cells; High-Throughput Screening Assays; Humans; Mice; Sequence Analysis, DNA

2013
Quantification of the sixth DNA base 5-hydroxymethylcytosine in colorectal cancer tissue and C-26 cell line.
    Bioanalysis, 2013, Volume: 5, Issue:7

    Topics: 5-Methylcytosine; Cell Line, Tumor; Cell Transformation, Neoplastic; Chromatography, Liquid; Colorectal Neoplasms; Cytosine; DNA Methylation; DNA, Neoplasm; Female; Humans; Male; Middle Aged; Tandem Mass Spectrometry

2013
Ascorbate induces ten-eleven translocation (Tet) methylcytosine dioxygenase-mediated generation of 5-hydroxymethylcytosine.
    The Journal of biological chemistry, 2013, May-10, Volume: 288, Issue:19

    Topics: 5-Methylcytosine; Animals; Ascorbic Acid; Cells, Cultured; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Gene Knockdown Techniques; Hydroxylation; Mice; Mice, Inbred C57BL; Phloretin; Proto-Oncogene Proteins; RNA, Small Interfering

2013
Single-molecule detection of 5-hydroxymethylcytosine in DNA through chemical modification and nanopore analysis.
    Angewandte Chemie (International ed. in English), 2013, Apr-15, Volume: 52, Issue:16

    Topics: 5-Methylcytosine; Cytosine; DNA; Molecular Structure; Nanopores

2013
GSE is a maternal factor involved in active DNA demethylation in zygotes.
    PloS one, 2013, Volume: 8, Issue:4

    Topics: 5-Methylcytosine; Animals; Blastocyst; Chromatin; Cytosine; DNA Methylation; Embryo, Mammalian; Embryonic Development; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; Homeodomain Proteins; Long Interspersed Nucleotide Elements; Male; Mice; Nanog Homeobox Protein; Octamer Transcription Factor-3; Protein Binding; Proteins; RNA, Small Interfering; Sex Factors; Zygote

2013
Dynamic changes in 5-hydroxymethylation signatures underpin early and late events in drug exposed liver.
    Nucleic acids research, 2013, Volume: 41, Issue:11

    Topics: 5-Methylcytosine; Animals; Carcinogens; Cell Transformation, Neoplastic; Cytochrome P-450 Enzyme System; Cytosine; DNA Methylation; Epigenesis, Genetic; Genetic Markers; Liver; Male; Mice; Oligonucleotide Array Sequence Analysis; Phenobarbital; Promoter Regions, Genetic; Transcriptome

2013
Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics.
    Cell, 2013, Apr-25, Volume: 153, Issue:3

    Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA Methylation; DNA Repair; Embryonic Stem Cells; Epigenesis, Genetic; Genetic Techniques; Genome-Wide Association Study; Heterochromatin; Mice; Oxidation-Reduction; Regulatory Elements, Transcriptional; Thymine DNA Glycosylase

2013
A convenient method for selective detection of 5-hydroxymethylcytosine and 5-formylcytosine sites in DNA sequences.
    Organic & biomolecular chemistry, 2013, Jun-07, Volume: 11, Issue:21

    Topics: 5-Methylcytosine; Base Sequence; Chromatography, High Pressure Liquid; Combinatorial Chemistry Techniques; Cytosine; Electrophoresis, Gel, Two-Dimensional; Sequence Analysis, DNA

2013
First evidence of DNA methylation in insect Tribolium castaneum: environmental regulation of DNA methylation within heterochromatin.
    Epigenetics, 2013, Volume: 8, Issue:5

    Topics: 5-Methylcytosine; Animals; Base Sequence; Blotting, Southern; Cytosine; DNA Methylation; DNA, Satellite; Electrophoresis, Agar Gel; Environment; Genome, Insect; Heterochromatin; Molecular Sequence Data; Tribolium

2013
Genome-wide loss of 5-hmC is a novel epigenetic feature of Huntington's disease.
    Human molecular genetics, 2013, Sep-15, Volume: 22, Issue:18

    Topics: 5-Methylcytosine; Animals; Brain; Corpus Striatum; Cytosine; Disease Models, Animal; DNA Methylation; Epigenomics; Humans; Huntington Disease; Mice; Mice, Transgenic; Nerve Tissue Proteins; Sequence Alignment; Sequence Analysis, DNA

2013
Decrease of 5-hydroxymethylcytosine is associated with progression of hepatocellular carcinoma through downregulation of TET1.
    PloS one, 2013, Volume: 8, Issue:5

    Topics: 5-Methylcytosine; Animals; Blotting, Western; Carcinoma, Hepatocellular; Cell Line, Tumor; Cytosine; Diethylnitrosamine; Dioxygenases; Disease Progression; DNA Methylation; DNA-Binding Proteins; Down-Regulation; Female; Humans; Immunohistochemistry; Kaplan-Meier Estimate; Liver Neoplasms; Liver Neoplasms, Experimental; Male; Middle Aged; Mixed Function Oxygenases; Prognosis; Proto-Oncogene Proteins; Rats, Wistar

2013
Tight correlation of 5-hydroxymethylcytosine and Polycomb marks in health and disease.
    Cell cycle (Georgetown, Tex.), 2013, Jun-15, Volume: 12, Issue:12

    Topics: 5-Methylcytosine; Cell Differentiation; Cell Line, Tumor; Cytosine; DNA Methylation; Epigenomics; Female; Histones; Humans; In Vitro Techniques; Male; Neoplasms; Polycomb-Group Proteins

2013
Formation of cyclobutane pyrimidine dimers at dipyrimidines containing 5-hydroxymethylcytosine.
    Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology, 2013, Volume: 12, Issue:8

    Topics: 5-Methylcytosine; Base Sequence; Cells, Cultured; Cytosine; DNA; Fibroblasts; Humans; Keratinocytes; Melanocytes; Pyrimidine Dimers; Ultraviolet Rays

2013
Hydrophilic material for the selective enrichment of 5-hydroxymethylcytosine and its liquid chromatography-tandem mass spectrometry detection.
    Analytical chemistry, 2013, Jun-18, Volume: 85, Issue:12

    Topics: 5-Methylcytosine; Chromatography, Liquid; Cytosine; HEK293 Cells; HeLa Cells; Humans; Hydrophobic and Hydrophilic Interactions; Jurkat Cells; Tandem Mass Spectrometry

2013
Subtelomeric hotspots of aberrant 5-hydroxymethylcytosine-mediated epigenetic modifications during reprogramming to pluripotency.
    Nature cell biology, 2013, Volume: 15, Issue:6

    Topics: 5-Methylcytosine; Cell Differentiation; Cell Line; Cellular Reprogramming; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Enzyme Activation; Epigenesis, Genetic; Fibroblasts; Humans; Induced Pluripotent Stem Cells; Mixed Function Oxygenases; Proto-Oncogene Proteins; RNA Interference; RNA, Small Interfering; Sequence Alignment; Transcription Factors

2013
5'-Methylcytosine and 5'-hydroxymethylcytosine each provide epigenetic information to the mouse zygote.
    PloS one, 2013, Volume: 8, Issue:5

    Topics: 5-Methylcytosine; Animals; Cell Nucleus; Cytosine; Dose-Response Relationship, Drug; Epigenesis, Genetic; Female; Male; Mice; Solvents; Temperature; Zygote

2013
Maternal low-protein diet affects epigenetic regulation of hepatic mitochondrial DNA transcription in a sex-specific manner in newborn piglets associated with GR binding to its promoter.
    PloS one, 2013, Volume: 8, Issue:5

    Topics: 5-Methylcytosine; Animals; Animals, Newborn; Cytosine; Dietary Proteins; DNA Methylation; DNA, Mitochondrial; Electron Transport Complex IV; Epigenesis, Genetic; Female; Liver; Male; Mothers; Promoter Regions, Genetic; Protein Binding; Receptors, Glucocorticoid; RNA, Messenger; Sex Characteristics; Swine; Transcription, Genetic

2013
5-Hydroxymethylcytosine is an essential intermediate of active DNA demethylation processes in primary human monocytes.
    Genome biology, 2013, May-26, Volume: 14, Issue:5

    Topics: 5-Methylcytosine; Cell Differentiation; Cytosine; Dendritic Cells; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Gene Knockdown Techniques; Humans; Mass Spectrometry; Monocytes; Proto-Oncogene Proteins

2013
5-methyl-cytosine and 5-hydroxy-methyl-cytosine in the genome of Biomphalaria glabrata, a snail intermediate host of Schistosoma mansoni.
    Parasites & vectors, 2013, Jun-06, Volume: 6

    Topics: 5-Methylcytosine; Animals; Biomphalaria; Chemistry Techniques, Analytical; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic

2013
Succinate dehydrogenase deficiency is associated with decreased 5-hydroxymethylcytosine production in gastrointestinal stromal tumors: implications for mechanisms of tumorigenesis.
    Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 2013, Volume: 26, Issue:11

    Topics: 5-Methylcytosine; Biomarkers, Tumor; Cell Transformation, Neoplastic; Cytosine; DNA Mutational Analysis; Down-Regulation; Electron Transport Complex II; Exons; Gastrointestinal Stromal Tumors; Gene Expression Regulation, Neoplastic; Genetic Predisposition to Disease; Humans; Immunohistochemistry; Membrane Proteins; Mutation; Phenotype; Proto-Oncogene Proteins c-kit; Receptor, Platelet-Derived Growth Factor alpha; Succinate Dehydrogenase

2013
Optical detection of epigenetic marks: sensitive quantification and direct imaging of individual hydroxymethylcytosine bases.
    Chemical communications (Cambridge, England), 2013, Oct-07, Volume: 49, Issue:77

    Topics: 5-Methylcytosine; Animals; Bacteriophage lambda; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Fluorescent Dyes; Mice; Models, Molecular; Optical Imaging

2013
Dynamics of 5-hydroxymethylcytosine during mouse spermatogenesis.
    Nature communications, 2013, Volume: 4

    Topics: 5-Methylcytosine; Animals; Cell Separation; Cell Shape; Chromatin; Chromosomes, Mammalian; Cytosine; DNA-Binding Proteins; Down-Regulation; Female; Gene Expression Profiling; Genome; Male; Mice; Microscopy, Phase-Contrast; Repetitive Sequences, Nucleic Acid; RNA, Messenger; Sex Chromosomes; Spermatogenesis; Spermatozoa; Transcriptome; Up-Regulation

2013
Nonenzymatic labeling of 5-hydroxymethylcytosine in nanopore sequencing.
    Chembiochem : a European journal of chemical biology, 2013, Jul-22, Volume: 14, Issue:11

    Topics: 5-Methylcytosine; Cytosine; DNA Methylation; DNA, Single-Stranded; Nanopores; Sequence Analysis, DNA

2013
Paternal aging and associated intraindividual alterations of global sperm 5-methylcytosine and 5-hydroxymethylcytosine levels.
    Fertility and sterility, 2013, Volume: 100, Issue:4

    Topics: 5-Methylcytosine; Adult; Age Factors; Aging; Cytosine; DNA; DNA Methylation; Enzyme-Linked Immunosorbent Assay; Humans; Male; Middle Aged; Paternal Age; Prospective Studies; Risk Factors; Spermatozoa; Up-Regulation

2013
Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells.
    Nature, 2013, Aug-08, Volume: 500, Issue:7461

    Topics: 5-Methylcytosine; Animals; Antioxidants; Ascorbic Acid; Blastocyst; Cell Line; Culture Media; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Regulation, Developmental; Gene Knockout Techniques; Mice; Protein Binding; Proto-Oncogene Proteins; Recombinant Proteins

2013
TET1 plays an essential oncogenic role in MLL-rearranged leukemia.
    Proceedings of the National Academy of Sciences of the United States of America, 2013, Jul-16, Volume: 110, Issue:29

    Topics: 5-Methylcytosine; Chromatin Immunoprecipitation; Chromatography, Liquid; Cytosine; DNA-Binding Proteins; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; Histone-Lysine N-Methyltransferase; Homeodomain Proteins; Humans; Immunoblotting; Leukemia, Myeloid, Acute; Microarray Analysis; Mixed Function Oxygenases; Myeloid Ecotropic Viral Integration Site 1 Protein; Myeloid-Lymphoid Leukemia Protein; Neoplasm Proteins; Oligonucleotide Array Sequence Analysis; Proto-Oncogene Proteins; Signal Transduction; Tandem Mass Spectrometry

2013
Global epigenomic reconfiguration during mammalian brain development.
    Science (New York, N.Y.), 2013, Aug-09, Volume: 341, Issue:6146

    Topics: 5-Methylcytosine; Adult; Animals; Base Sequence; Conserved Sequence; Cytosine; DNA Methylation; Epigenesis, Genetic; Epigenomics; Frontal Lobe; Gene Expression Regulation, Developmental; Genome-Wide Association Study; Humans; Longevity; Mice; Mice, Inbred C57BL; X Chromosome Inactivation

2013
Paternal age and sperm methylation status.
    Fertility and sterility, 2013, Volume: 100, Issue:4

    Topics: 5-Methylcytosine; Aging; Cytosine; DNA; DNA Methylation; Humans; Male; Paternal Age; Spermatozoa

2013
MicroRNA-antagonism regulates breast cancer stemness and metastasis via TET-family-dependent chromatin remodeling.
    Cell, 2013, Jul-18, Volume: 154, Issue:2

    Topics: 5-Methylcytosine; Animals; Breast Neoplasms; Chromatin Assembly and Disassembly; Cytosine; Epithelial-Mesenchymal Transition; Gene Expression Regulation, Neoplastic; Humans; Mice; Mice, Transgenic; MicroRNAs; Neoplasm Metastasis; Neoplasm Transplantation; Neoplastic Stem Cells; Proto-Oncogene Proteins; RNA Interference; Transplantation, Heterologous

2013
Genome-wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancer.
    Nucleic acids research, 2013, Volume: 41, Issue:16

    Topics: 5-Methylcytosine; Animals; Cell Line, Tumor; Cell Transformation, Neoplastic; Cytosine; DNA, Neoplasm; Gene Expression; Genome, Human; Genomics; Glycosyltransferases; Humans; Mice; Pancreatic Neoplasms; Polymerase Chain Reaction

2013
Transient reduction of 5-methylcytosine and 5-hydroxymethylcytosine is associated with active DNA demethylation during regeneration of zebrafish fin.
    Epigenetics, 2013, Volume: 8, Issue:9

    Topics: 5-Methylcytosine; Animal Fins; Animals; Animals, Genetically Modified; Cell Dedifferentiation; Cytosine; DNA Methylation; DNA Repair; Embryo, Nonmammalian; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Regeneration; Zebrafish

2013
PPARγ-induced PARylation promotes local DNA demethylation by production of 5-hydroxymethylcytosine.
    Nature communications, 2013, Volume: 4

    Topics: 3T3-L1 Cells; 5-Methylcytosine; Adipocytes; Adipose Tissue; Amino Acid Sequence; Animals; Base Sequence; Cell Differentiation; Cytosine; DNA Methylation; DNA-Binding Proteins; Enhancer Elements, Genetic; HEK293 Cells; Humans; Hydroxylation; Mice; Molecular Sequence Data; Phenanthrenes; Poly Adenosine Diphosphate Ribose; PPAR gamma; Protein Binding; Proto-Oncogene Proteins; Response Elements

2013
Genetics. The maturing brain methylome.
    Science (New York, N.Y.), 2013, Aug-09, Volume: 341, Issue:6146

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Epigenesis, Genetic; Frontal Lobe; Gene Expression Regulation, Developmental; Humans

2013
Hydroquinone increases 5-hydroxymethylcytosine formation through ten eleven translocation 1 (TET1) 5-methylcytosine dioxygenase.
    The Journal of biological chemistry, 2013, Oct-04, Volume: 288, Issue:40

    Topics: 5-Methylcytosine; Cell Cycle; Cell Nucleus; Cytosine; Dioxygenases; DNA; DNA Methylation; DNA-Binding Proteins; Gene Expression Regulation; Genome, Human; HEK293 Cells; Humans; Hydroquinones; Mixed Function Oxygenases; Proto-Oncogene Proteins; Reactive Oxygen Species

2013
Ontogeny, distribution and potential roles of 5-hydroxymethylcytosine in human liver function.
    Genome biology, 2013, Aug-19, Volume: 14, Issue:8

    Topics: 5-Methylcytosine; Adult; Age Factors; Carbohydrate Metabolism; Cytosine; DNA Methylation; Epigenesis, Genetic; Fetus; Gene Expression Regulation, Developmental; Genome, Human; Hepatocytes; Humans; Inactivation, Metabolic; Lipid Metabolism; Liver; Molecular Sequence Annotation; Protein Biosynthesis

2013
Crystal structures of B-DNA dodecamer containing the epigenetic modifications 5-hydroxymethylcytosine or 5-methylcytosine.
    Nucleic acids research, 2013, Volume: 41, Issue:21

    Topics: 5-Methylcytosine; Cations; Crystallography, X-Ray; Cytosine; DNA, B-Form; Epigenesis, Genetic; Models, Molecular; Thermodynamics; Water

2013
MLML: consistent simultaneous estimates of DNA methylation and hydroxymethylation.
    Bioinformatics (Oxford, England), 2013, Oct-15, Volume: 29, Issue:20

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; DNA Methylation; High-Throughput Nucleotide Sequencing; Sequence Analysis, DNA; Software

2013
Alteration of genic 5-hydroxymethylcytosine patterning in olfactory neurons correlates with changes in gene expression and cell identity.
    Proceedings of the National Academy of Sciences of the United States of America, 2013, Sep-03, Volume: 110, Issue:36

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cytosine; Dioxygenases; DNA-Binding Proteins; Fluorescent Antibody Technique; Gene Expression Profiling; Gene Expression Regulation, Developmental; Green Fluorescent Proteins; Mice; Mice, Inbred C57BL; Mice, Transgenic; Olfactory Bulb; Olfactory Mucosa; Olfactory Receptor Neurons; Proto-Oncogene Proteins; Reverse Transcriptase Polymerase Chain Reaction

2013
Real-time dynamics of methyl-CpG-binding domain protein 3 and its role in DNA demethylation by fluorescence correlation spectroscopy.
    Epigenetics, 2013, Volume: 8, Issue:10

    Topics: 5-Methylcytosine; Azacitidine; Cell Hypoxia; Cytosine; Decitabine; DNA; DNA Modification Methylases; DNA-Binding Proteins; HeLa Cells; Humans; Single-Cell Analysis; Spectrometry, Fluorescence

2013
Decreased 5-hydroxymethylcytosine (5-hmC) is an independent poor prognostic factor in gastric cancer patients.
    Journal of biomedical nanotechnology, 2013, Volume: 9, Issue:9

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Biomarkers, Tumor; China; Cytosine; Female; Humans; Incidence; Male; Middle Aged; Prognosis; Reproducibility of Results; Risk Assessment; Sensitivity and Specificity; Stomach Neoplasms; Survival Analysis; Survival Rate

2013
Deamination, oxidation, and C-C bond cleavage reactivity of 5-hydroxymethylcytosine, 5-formylcytosine, and 5-carboxycytosine.
    Journal of the American Chemical Society, 2013, Oct-02, Volume: 135, Issue:39

    Topics: 5-Methylcytosine; Carboxylic Acids; Cytosine; Deamination; Oxidation-Reduction; Sulfhydryl Compounds

2013
Reactivation of Х chromosome upon reprogramming leads to changes in the replication pattern and 5hmC accumulation.
    Chromosoma, 2014, Volume: 123, Issue:1-2

    Topics: 5-Methylcytosine; Animals; Cell Line; Cellular Reprogramming; Chromosomes, Human, X; Cytosine; DNA Replication; DNA Replication Timing; Female; Gene Expression Regulation; Humans; Induced Pluripotent Stem Cells; Mice; X Chromosome Inactivation

2014
Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells.
    Genome biology, 2013, Aug-29, Volume: 14, Issue:8

    Topics: 5-Methylcytosine; Adult Stem Cells; Animals; Cell Differentiation; Chromatin; Cytosine; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Regulation; Genome; Histones; Mice; Pluripotent Stem Cells; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Proto-Oncogene Proteins; Repressor Proteins; RNA, Small Interfering; Sin3 Histone Deacetylase and Corepressor Complex; Transcription, Genetic

2013
Sequence-specific microscopic visualization of DNA methylation status at satellite repeats in individual cell nuclei and chromosomes.
    Nucleic acids research, 2013, Volume: 41, Issue:19

    Topics: 5-Methylcytosine; Animals; Base Sequence; Cell Nucleus; Cells, Cultured; Chromosomes, Mammalian; Cytosine; DNA Methylation; DNA, Satellite; Embryonic Stem Cells; Humans; In Situ Hybridization, Fluorescence; Male; Mice; Spermatozoa

2013
Fluorescent strategy based on cationic conjugated polymer fluorescence resonance energy transfer for the quantification of 5-(hydroxymethyl)cytosine in genomic DNA.
    Analytical chemistry, 2013, Nov-19, Volume: 85, Issue:22

    Topics: 5-Methylcytosine; Animals; Cations; Chromatography, High Pressure Liquid; Cytosine; DNA; Embryonic Stem Cells; Fluorescence Resonance Energy Transfer; Fluorescent Dyes; HEK293 Cells; HeLa Cells; Humans; Mice; Oxidation-Reduction; Polymers; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Static Electricity

2013
DNA methylation: an identity card for brain cells.
    Genome biology, 2013, Aug-27, Volume: 14, Issue:8

    Topics: 5-Methylcytosine; Animals; Brain; Cytosine; DNA Methylation; Epigenesis, Genetic; Genome; Humans; Mice; Neuroglia; Neurons; Organ Specificity

2013
Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine.
    Nature protocols, 2013, Volume: 8, Issue:10

    Topics: 5-Methylcytosine; Cytosine; DNA Methylation; Oxidation-Reduction; Sequence Analysis, DNA

2013
Ascorbate-induced generation of 5-hydroxymethylcytosine is unaffected by varying levels of iron and 2-oxoglutarate.
    Biochemical and biophysical research communications, 2013, Oct-04, Volume: 439, Issue:4

    Topics: 5-Methylcytosine; Animals; Ascorbic Acid; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Fibroblasts; Iron; Isocitrate Dehydrogenase; Ketoglutaric Acids; Mice; Mice, Inbred C57BL; Proto-Oncogene Proteins; Sodium-Coupled Vitamin C Transporters

2013
Friedreich ataxia patient tissues exhibit increased 5-hydroxymethylcytosine modification and decreased CTCF binding at the FXN locus.
    PloS one, 2013, Volume: 8, Issue:9

    Topics: 5-Methylcytosine; 5' Untranslated Regions; Adolescent; Adult; CCCTC-Binding Factor; Cerebellum; Cytosine; DNA Methylation; Frataxin; Friedreich Ataxia; Genetic Loci; Humans; Iron-Binding Proteins; Microsatellite Repeats; Middle Aged; Myocardium; Protein Binding; Repressor Proteins; Young Adult

2013
PU.1 target genes undergo Tet2-coupled demethylation and DNMT3b-mediated methylation in monocyte-to-osteoclast differentiation.
    Genome biology, 2013, Volume: 14, Issue:9

    Topics: 5-Methylcytosine; Binding Sites; Cell Differentiation; CpG Islands; Cytosine; Dioxygenases; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3B; DNA-Binding Proteins; Epigenesis, Genetic; Humans; Monocytes; NF-kappa B; Osteoclasts; Protein Binding; Protein Interaction Domains and Motifs; Proto-Oncogene Proteins; RNA, Small Interfering; Trans-Activators; Transcription Factor AP-1

2013
Mutagenic and cytotoxic properties of oxidation products of 5-methylcytosine revealed by next-generation sequencing.
    PloS one, 2013, Volume: 8, Issue:9

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Escherichia coli; High-Throughput Nucleotide Sequencing; Oxidation-Reduction; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

2013
Intronic non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees.
    BMC genomics, 2013, Sep-30, Volume: 14

    Topics: 5-Methylcytosine; Africa; Alternative Splicing; Animals; Bees; Behavior, Animal; CpG Islands; Cytosine; DNA Methylation; Europe; Exons; Gene Expression Regulation; Genes, Insect; Honey; Introns; Reproducibility of Results; RNA Splice Sites; RNA, Messenger; Sequence Analysis, DNA; Sulfites

2013
Dynamic changes in DNA methylation and hydroxymethylation when hES cells undergo differentiation toward a neuronal lineage.
    Human molecular genetics, 2014, Feb-01, Volume: 23, Issue:3

    Topics: 5-Methylcytosine; Cell Differentiation; Cell Lineage; Cells, Cultured; Cytosine; DNA Methylation; Embryonic Stem Cells; Gene Expression Regulation; Gene Silencing; GPI-Linked Proteins; Homeodomain Proteins; Humans; Mesoderm; Nerve Tissue Proteins; Neurogenesis; Neurons; Promoter Regions, Genetic; Proto-Oncogene Proteins c-akt; RANK Ligand; Receptor, Notch1; Transcription Factors

2014
Evaluation of UDP-GlcN derivatives for selective labeling of 5-(hydroxymethyl)cytosine.
    Chembiochem : a European journal of chemical biology, 2013, Nov-04, Volume: 14, Issue:16

    Topics: 5-Methylcytosine; Animals; Antibodies; Bacteriophage T4; Cytosine; DNA; Embryonic Stem Cells; Fluorescent Dyes; Glucosamine; Glucosyltransferases; Glycosylation; Mice; Oligonucleotides; Staining and Labeling; Substrate Specificity; Uracil Nucleotides

2013
Genome-wide alteration of 5-hydroxymethylcytosine in a mouse model of fragile X-associated tremor/ataxia syndrome.
    Human molecular genetics, 2014, Feb-15, Volume: 23, Issue:4

    Topics: 5-Methylcytosine; Animals; Ataxia; Base Sequence; Cerebellum; Consensus Sequence; Cytosine; Disease Models, Animal; DNA Methylation; Fragile X Syndrome; Humans; Mice; Mice, Transgenic; Terminator Regions, Genetic; Transcription Initiation Site; Tremor

2014
MicroRNA-26a targets ten eleven translocation enzymes and is regulated during pancreatic cell differentiation.
    Proceedings of the National Academy of Sciences of the United States of America, 2013, Oct-29, Volume: 110, Issue:44

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cytosine; Dioxygenases; DNA-Binding Proteins; Epigenesis, Genetic; Flow Cytometry; Gene Expression Regulation, Developmental; Islets of Langerhans; Luciferases; Mice; Mice, Transgenic; Microfluidics; MicroRNAs; Proto-Oncogene Proteins; Real-Time Polymerase Chain Reaction; Thymine DNA Glycosylase

2013
An extensive network of TET2-targeting MicroRNAs regulates malignant hematopoiesis.
    Cell reports, 2013, Oct-31, Volume: 5, Issue:2

    Topics: 3' Untranslated Regions; 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA-Binding Proteins; Down-Regulation; Hematologic Neoplasms; Hematopoiesis; Humans; Mice; MicroRNAs; Phenotype; Proto-Oncogene Proteins

2013
Loss of 5-hydroxymethylcytosine and TET2 in oral squamous cell carcinoma.
    Anticancer research, 2013, Volume: 33, Issue:10

    Topics: 5-Methylcytosine; Carcinoma, Squamous Cell; Case-Control Studies; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression; Gene Expression Regulation, Neoplastic; Humans; Mouth Mucosa; Mouth Neoplasms; Proto-Oncogene Proteins

2013
Association of 5-methylcytosine and 5-hydroxymethylcytosine with mitochondrial DNA content and clinical and biochemical parameters in hepatocellular carcinoma.
    PloS one, 2013, Volume: 8, Issue:10

    Topics: 5-Methylcytosine; Adolescent; Adult; Aged; Aged, 80 and over; Carcinoma, Hepatocellular; Cytosine; DNA, Mitochondrial; Female; Humans; Liver Cirrhosis; Liver Neoplasms; Male; Middle Aged; Risk Factors; Tumor Burden; Young Adult

2013
Hydroxymethylated DNA immunoprecipitation (hmeDIP).
    Methods in molecular biology (Clifton, N.J.), 2014, Volume: 1094

    Topics: 5-Methylcytosine; Antibody Specificity; Brain; Breast; Cytosine; DNA; DNA Fragmentation; Epitopes; Female; Humans; Immunoprecipitation; Sonication

2014
Detection and mapping of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore MspA.
    Proceedings of the National Academy of Sciences of the United States of America, 2013, Nov-19, Volume: 110, Issue:47

    Topics: 5-Methylcytosine; Bayes Theorem; Cytosine; DNA Methylation; Epigenomics; Models, Molecular; Molecular Structure; Nanopores; Porins

2013
Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands.
    Proceedings of the National Academy of Sciences of the United States of America, 2013, Nov-19, Volume: 110, Issue:47

    Topics: 5-Methylcytosine; Cytosine; DNA; DNA Methylation; Epigenomics; Nanopores; Research Design

2013
5-Hydroxymethylcytosine as a useful marker to differentiate between malignant melanomas and benign melanocytic nevi.
    Journal of dermatological science, 2014, Volume: 73, Issue:2

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Biomarkers; CpG Islands; Cytosine; DNA Methylation; Epigenesis, Genetic; Female; Humans; Keratinocytes; Male; Melanoma; Middle Aged; Nevus, Epithelioid and Spindle Cell; Nevus, Pigmented; Skin Neoplasms

2014
Comparative analysis of affinity-based 5-hydroxymethylation enrichment techniques.
    Nucleic acids research, 2013, Volume: 41, Issue:22

    Topics: 5-Methylcytosine; Animals; Antibodies; Chromatin; CpG Islands; Cytosine; DNA; DNA-Binding Proteins; Genetic Loci; Genomic Imprinting; Immunoassay; Liver; Male; Mice; Mice, Inbred C57BL; Oligonucleotide Array Sequence Analysis; Tandem Repeat Sequences

2013
Redox-active quinones induces genome-wide DNA methylation changes by an iron-mediated and Tet-dependent mechanism.
    Nucleic acids research, 2014, Volume: 42, Issue:3

    Topics: 5-Methylcytosine; Animals; Apoferritins; Cell Line; Cell Line, Tumor; Chloranil; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Gene Expression Regulation; Genome; Humans; Iron; Mice; Oxidation-Reduction; Proto-Oncogene Proteins; Quinones

2014
Large conserved domains of low DNA methylation maintained by Dnmt3a.
    Nature genetics, 2014, Volume: 46, Issue:1

    Topics: 5-Methylcytosine; Animals; Base Sequence; Conserved Sequence; CpG Islands; Cytosine; Databases, Genetic; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3A; Epigenesis, Genetic; Gene Expression Regulation; Hematopoietic Stem Cells; Histones; Humans; Leukemia; Male; Mice; Mice, Inbred C57BL; Mice, Mutant Strains

2014
Structural insights into how 5-hydroxymethylation influences transcription factor binding.
    Chemical communications (Cambridge, England), 2014, Feb-21, Volume: 50, Issue:15

    Topics: 5-Methylcytosine; Cytosine; DNA; DNA Methylation; Models, Molecular; Nucleic Acid Conformation; Oxidation-Reduction; Protein Binding; Transcription Factors

2014
Discrimination between 5-hydroxymethylcytosine and 5-methylcytosine in DNA by selective chemical labeling.
    Bioorganic & medicinal chemistry letters, 2014, Jan-01, Volume: 24, Issue:1

    Topics: 5-Methylcytosine; Crystallography, X-Ray; Cytosine; DNA; Models, Molecular; Molecular Structure

2014
Dynamic reprogramming of 5-hydroxymethylcytosine during early porcine embryogenesis.
    Theriogenology, 2014, Volume: 81, Issue:3

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Embryonic Development; Nuclear Transfer Techniques; Swine

2014
Understanding variation in transcription factor binding by modeling transcription factor genome-epigenome interactions.
    PLoS computational biology, 2013, Volume: 9, Issue:12

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; Embryonic Stem Cells; Epigenomics; Genome; Histones; Mice; Models, Biological; Protein Binding; Transcription Factors

2013
Cell cycle-dependent turnover of 5-hydroxymethyl cytosine in mouse embryonic stem cells.
    PloS one, 2013, Volume: 8, Issue:12

    Topics: 5-Methylcytosine; Animals; CCAAT-Enhancer-Binding Proteins; Cell Cycle; Cell Proliferation; Cell Separation; CpG Islands; Cytosine; DNA; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3A; DNA Methyltransferase 3B; DNA Replication; Embryonic Stem Cells; Flow Cytometry; Mice; Mice, Knockout; Multigene Family; Nuclear Proteins; Promoter Regions, Genetic; Protein Structure, Tertiary; Ubiquitin-Protein Ligases

2013
Ultrashort single-walled carbon nanotubes in a lipid bilayer as a new nanopore sensor.
    Nature communications, 2013, Volume: 4

    Topics: 5-Methylcytosine; Algorithms; Biological Transport; Biosensing Techniques; Cytosine; DNA; DNA Damage; DNA, Single-Stranded; Escherichia coli; Ions; Lipid Bilayers; Molecular Dynamics Simulation; Nanopores; Nanotechnology; Nanotubes, Carbon; Thermodynamics

2013
Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions.
    PLoS genetics, 2013, Volume: 9, Issue:12

    Topics: 5-Methylcytosine; Animals; Binding Sites; CCCTC-Binding Factor; Cell Differentiation; CpG Islands; Cytosine; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Regulation; Genome; Mice; Promoter Regions, Genetic; Regulatory Sequences, Nucleic Acid; Repressor Proteins; Transcription Factors; Transcription, Genetic

2013
Cell-cycle control of developmentally regulated transcription factors accounts for heterogeneity in human pluripotent cells.
    Stem cell reports, 2013, Volume: 1, Issue:6

    Topics: 5-Methylcytosine; Cell Culture Techniques; Cell Cycle Checkpoints; Cell Differentiation; Cytosine; Embryonic Stem Cells; Epigenesis, Genetic; Gene Expression Profiling; Gene Expression Regulation, Developmental; Humans; Pluripotent Stem Cells; Signal Transduction; Transcription Factors

2013
Hydroxymethylation at gene regulatory regions directs stem/early progenitor cell commitment during erythropoiesis.
    Cell reports, 2014, Jan-16, Volume: 6, Issue:1

    Topics: 5-Methylcytosine; Antigens, CD34; Cells, Cultured; Cytosine; Dioxygenases; DNA Methylation; Erythroid Cells; Erythropoiesis; Histones; Humans; Mutation; Regulatory Sequences, Nucleic Acid; Transcription Factors

2014
Analysis of TET expression/activity and 5mC oxidation during normal and malignant germ cell development.
    PloS one, 2013, Volume: 8, Issue:12

    Topics: 5-Methylcytosine; Carcinoma; Cell Line, Tumor; Cytosine; DNA Methylation; DNA-Binding Proteins; Down-Regulation; Germ Cells; Humans; Immunohistochemistry; Male; Mixed Function Oxygenases; Neoplasms, Germ Cell and Embryonal; Oxidation-Reduction; Proto-Oncogene Proteins; Spermatogenesis; Testis

2013
Global changes in DNA methylation and hydroxymethylation in Alzheimer's disease human brain.
    Neurobiology of aging, 2014, Volume: 35, Issue:6

    Topics: 5-Methylcytosine; Aged; Aged, 80 and over; Alzheimer Disease; Astrocytes; Cytosine; Disease Progression; DNA Methylation; Epigenesis, Genetic; Female; Gene Expression; Genetic Markers; Humans; Male; Microglia; Middle Aged; Neurons; Parahippocampal Gyrus

2014
Loss of 5-hydroxymethylcytosine correlates with increasing morphologic dysplasia in melanocytic tumors.
    Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 2014, Volume: 27, Issue:7

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Cytosine; DNA Methylation; Female; Humans; Male; Melanoma; Middle Aged; Nevus; Precancerous Conditions; Skin Neoplasms; Young Adult

2014
Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA.
    Nature, 2014, Feb-20, Volume: 506, Issue:7488

    Topics: 5-Methylcytosine; Amino Acid Sequence; Animals; Catalytic Domain; Conserved Sequence; Crystallography, X-Ray; Cytosine; Dioxygenases; DNA; DNA-Binding Proteins; Escherichia coli Proteins; HEK293 Cells; Humans; Hydrogen Bonding; Mice; Mixed Function Oxygenases; Models, Molecular; Molecular Sequence Data; Naegleria; Proto-Oncogene Proteins; Structural Homology, Protein; Structure-Activity Relationship; Substrate Specificity

2014
Differential regulation of the ten-eleven translocation (TET) family of dioxygenases by O-linked β-N-acetylglucosamine transferase (OGT).
    The Journal of biological chemistry, 2014, Feb-28, Volume: 289, Issue:9

    Topics: 5-Methylcytosine; Active Transport, Cell Nucleus; Cell Nucleus; Cytosine; Dioxygenases; DNA Methylation; Glucose; HeLa Cells; Humans; N-Acetylglucosaminyltransferases

2014
Base-resolution maps of 5-methylcytosine and 5-hydroxymethylcytosine in Dahl S rats: effect of salt and genomic sequence.
    Hypertension (Dallas, Tex. : 1979), 2014, Volume: 63, Issue:4

    Topics: 5-Methylcytosine; Animals; Base Sequence; CpG Islands; Cytosine; Disease Models, Animal; Epigenomics; Genome-Wide Association Study; Hypertension; Kidney Medulla; Male; Phenotype; Rats; Rats, Inbred Dahl; RNA, Messenger; Sodium Chloride, Dietary; Transcriptome

2014
Increased binding of MeCP2 to the GAD1 and RELN promoters may be mediated by an enrichment of 5-hmC in autism spectrum disorder (ASD) cerebellum.
    Translational psychiatry, 2014, Jan-21, Volume: 4

    Topics: 5-Methylcytosine; Cell Adhesion Molecules, Neuronal; Cerebellar Cortex; Child Development Disorders, Pervasive; Cytosine; DNA-Binding Proteins; Epigenesis, Genetic; Extracellular Matrix Proteins; Glutamate Decarboxylase; Humans; Methyl-CpG-Binding Protein 2; Mixed Function Oxygenases; Nerve Tissue Proteins; Promoter Regions, Genetic; Proto-Oncogene Proteins; Reelin Protein; Serine Endopeptidases; Tissue Banks

2014
A global increase in 5-hydroxymethylcytosine levels marks osteoarthritic chondrocytes.
    Arthritis & rheumatology (Hoboken, N.J.), 2014, Volume: 66, Issue:1

    Topics: 5-Methylcytosine; ADAM Proteins; ADAMTS5 Protein; Adolescent; Adult; Aged; Aged, 80 and over; Anterior Cruciate Ligament Reconstruction; Arthroplasty, Replacement, Knee; Biomarkers; Cartilage, Articular; Case-Control Studies; Child; Child, Preschool; Chondrocytes; CpG Islands; Cytokines; Cytosine; DNA Methylation; DNA-Binding Proteins; Down-Regulation; Enzyme-Linked Immunosorbent Assay; Epigenesis, Genetic; Female; Gene Expression; Humans; Hypoxanthine Phosphoribosyltransferase; Infant; Male; Matrix Metalloproteinase 1; Matrix Metalloproteinase 3; Middle Aged; Mixed Function Oxygenases; Osteoarthritis, Knee; Promoter Regions, Genetic; Proto-Oncogene Proteins; Young Adult

2014
Hsa-miR-520d induces hepatoma cells to form normal liver tissues via a stemness-mediated process.
    Scientific reports, 2014, Jan-24, Volume: 4

    Topics: 5-Methylcytosine; Animals; Carcinoma, Hepatocellular; Cell Dedifferentiation; Cell Differentiation; Cell Line, Tumor; Cell Movement; Cytosine; DNA Methylation; ELAV Proteins; ELAV-Like Protein 2; Gene Expression Regulation, Neoplastic; Gene Transfer Techniques; Genetic Vectors; HEK293 Cells; Homeodomain Proteins; Humans; Lentivirus; Liver; Liver Neoplasms; Metabolomics; Mice; MicroRNAs; Nanog Homeobox Protein; Neoplasm Transplantation; Neoplastic Stem Cells; Octamer Transcription Factor-3; Pluripotent Stem Cells; Proto-Oncogene Proteins c-myc; RNA Interference; RNA, Small Interfering; Serum Albumin; Serum Albumin, Human; Telomerase; Transplantation, Heterologous; Tumor Suppressor Protein p53

2014
Modulation of ten-eleven translocation 1 (TET1), Isocitrate Dehydrogenase (IDH) expression, α-Ketoglutarate (α-KG), and DNA hydroxymethylation levels by interleukin-1β in primary human chondrocytes.
    The Journal of biological chemistry, 2014, Mar-07, Volume: 289, Issue:10

    Topics: 5-Methylcytosine; Chondrocytes; Cytosine; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Humans; Interleukin-1beta; Isocitrate Dehydrogenase; Ketoglutaric Acids; Mixed Function Oxygenases; Primary Cell Culture; Proto-Oncogene Proteins; RNA, Messenger; Tumor Necrosis Factor-alpha

2014
Array-based assay detects genome-wide 5-mC and 5-hmC in the brains of humans, non-human primates, and mice.
    BMC genomics, 2014, Feb-13, Volume: 15

    Topics: 5-Methylcytosine; Animals; Brain; CpG Islands; Cytosine; DNA Methylation; Epigenesis, Genetic; Genetic Loci; Genome; Genome, Human; Humans; Macaca mulatta; Mice; Oligonucleotide Array Sequence Analysis

2014
Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain.
    Genome biology, 2014, Mar-04, Volume: 15, Issue:3

    Topics: 5-Methylcytosine; Adult; Brain; CpG Islands; Cytosine; DNA Methylation; DNA, Antisense; Exons; Female; Gene Expression Regulation, Developmental; Genome, Human; Histones; Humans; Introns; Male; Transcription, Genetic

2014
DNA binding of the p21 repressor ZBTB2 is inhibited by cytosine hydroxymethylation.
    Biochemical and biophysical research communications, 2014, Mar-28, Volume: 446, Issue:1

    Topics: 5-Methylcytosine; Cell Line, Tumor; CpG Islands; Cyclin-Dependent Kinase Inhibitor p21; Cytosine; DNA Methylation; DNA, Neoplasm; Epigenesis, Genetic; HeLa Cells; Humans; Protein Binding; Repressor Proteins

2014
Dynamics of ten-eleven translocation hydroxylase family proteins and 5-hydroxymethylcytosine in oligodendrocyte differentiation.
    Glia, 2014, Volume: 62, Issue:6

    Topics: 5-Methylcytosine; Amino Acid Sequence; Animals; Animals, Newborn; Cell Differentiation; Cytosine; Dioxygenases; DNA-Binding Proteins; Humans; Mice; Mixed Function Oxygenases; Molecular Sequence Data; Oligodendroglia; Proto-Oncogene Proteins; Rats; Rats, Sprague-Dawley

2014
TET proteins and 5-methylcytosine oxidation in the immune system.
    Cold Spring Harbor symposia on quantitative biology, 2013, Volume: 78

    Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression Profiling; Humans; Immunoprecipitation; Mice; Mixed Function Oxygenases; Oxidoreductases; Polymorphism, Single Nucleotide; Proto-Oncogene Proteins

2013
DNA counterstaining for methylation and hydroxymethylation immunostaining in bovine zygotes.
    Analytical biochemistry, 2014, Jun-01, Volume: 454

    Topics: 5-Methylcytosine; Animals; Cattle; Cytosine; DNA Methylation; Staining and Labeling; Zygote

2014
Crystal structure of the 5hmC specific endonuclease PvuRts1I.
    Nucleic acids research, 2014, Volume: 42, Issue:9

    Topics: 5-Methylcytosine; Amino Acid Sequence; Amino Acid Substitution; Bacterial Proteins; Bacteriophage T4; Catalytic Domain; Crystallography, X-Ray; Cytosine; DNA Restriction Enzymes; DNA, Viral; Models, Molecular; Molecular Sequence Data; Mutagenesis, Site-Directed; Protein Binding; Protein Structure, Secondary; Proteus vulgaris; Substrate Specificity

2014
A TET homologue protein from Coprinopsis cinerea (CcTET) that biochemically converts 5-methylcytosine to 5-hydroxymethylcytosine, 5-formylcytosine, and 5-carboxylcytosine.
    Journal of the American Chemical Society, 2014, Apr-02, Volume: 136, Issue:13

    Topics: 5-Methylcytosine; Agaricales; Cytosine; Dioxygenases; Fungal Proteins

2014
Hydroxymethylation and DNA methylation profiles in the prefrontal cortex of the non-human primate rhesus macaque and the impact of maternal deprivation on hydroxymethylation.
    Neuroscience, 2014, May-30, Volume: 268

    Topics: 5-Methylcytosine; Animals; Cytosine; Databases, Genetic; DNA Methylation; Epigenesis, Genetic; Frontal Lobe; Gene Expression; Macaca mulatta; Maternal Deprivation; Methylation; Mice, Inbred C57BL; Oligonucleotide Array Sequence Analysis; Prefrontal Cortex; Promoter Regions, Genetic

2014
Excision of 5-hydroxymethylcytosine by DEMETER family DNA glycosylases.
    Biochemical and biophysical research communications, 2014, Apr-18, Volume: 446, Issue:4

    Topics: 5-Methylcytosine; Animals; Arabidopsis; Arabidopsis Proteins; Cytosine; DNA Glycosylases; DNA Methylation; Mice; N-Glycosyl Hydrolases; Nuclear Proteins; Signal Transduction; Trans-Activators

2014
Notch signaling genes: myogenic DNA hypomethylation and 5-hydroxymethylcytosine.
    Epigenetics, 2014, Volume: 9, Issue:6

    Topics: 5-Methylcytosine; Aged; Aged, 80 and over; Cerebellum; Chromatin; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Female; Histones; Humans; Male; Mixed Function Oxygenases; Muscle Fibers, Skeletal; Muscle, Skeletal; Myoblasts; Myocardium; Organ Specificity; Protein Processing, Post-Translational; Proto-Oncogene Proteins; Receptors, Notch

2014
Cross-region reduction in 5-hydroxymethylcytosine in Alzheimer's disease brain.
    Neurobiology of aging, 2014, Volume: 35, Issue:8

    Topics: 5-Methylcytosine; Aged; Aged, 80 and over; Alzheimer Disease; Brain; Cytosine; Epigenesis, Genetic; Female; Fluorescent Antibody Technique; Humans; Ivermectin; Male; Methylation

2014
Boronic acid-mediated polymerase chain reaction for gene- and fragment-specific detection of 5-hydroxymethylcytosine.
    Nucleic acids research, 2014, Volume: 42, Issue:9

    Topics: 5-Methylcytosine; Animals; Base Sequence; Boronic Acids; Cells, Cultured; Cytosine; Embryonic Stem Cells; Introns; Mice; PAX5 Transcription Factor; Polymerase Chain Reaction; Sequence Analysis, DNA

2014
Age-dependent increment of hydroxymethylation in the brain cortex in the triple-transgenic mouse model of Alzheimer's disease.
    Journal of Alzheimer's disease : JAD, 2014, Volume: 41, Issue:3

    Topics: 5-Methylcytosine; Age Factors; Aging; Alzheimer Disease; Amyloid beta-Peptides; Amyloid beta-Protein Precursor; Animals; Cerebral Cortex; Cytosine; Disease Models, Animal; Gene Expression Regulation; Genotype; Humans; Methylation; Mice; Mice, Inbred C57BL; Mice, Transgenic; Mutation; Presenilin-1; tau Proteins

2014
Genome-wide analysis of DNA 5-hmC in peripheral blood of uremia by hMeDIP-chip.
    Renal failure, 2014, Volume: 36, Issue:6

    Topics: 5-Methylcytosine; Case-Control Studies; CpG Islands; Cytosine; DNA Methylation; Genome-Wide Association Study; Humans; Promoter Regions, Genetic; Uremia

2014
High expression of 5-hydroxymethylcytosine and isocitrate dehydrogenase 2 is associated with favorable prognosis after curative resection of hepatocellular carcinoma.
    Journal of experimental & clinical cancer research : CR, 2014, Apr-10, Volume: 33

    Topics: 5-Methylcytosine; Carcinoma, Hepatocellular; Cytosine; DNA Methylation; Female; Hepatectomy; Humans; Isocitrate Dehydrogenase; Kaplan-Meier Estimate; Liver Neoplasms; Male; Middle Aged; Multivariate Analysis; Neoplasm Recurrence, Local; Prognosis; Proportional Hazards Models; Retrospective Studies; Treatment Outcome

2014
TET2 gene expression and 5-hydroxymethylcytosine level in multiple sclerosis peripheral blood cells.
    Biochimica et biophysica acta, 2014, Volume: 1842, Issue:7

    Topics: 5-Methylcytosine; Adult; Case-Control Studies; Cytosine; Dioxygenases; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA-Binding Proteins; Down-Regulation; Female; Gene Expression; Humans; Leukocytes, Mononuclear; Male; Multiple Sclerosis; Promoter Regions, Genetic; Proto-Oncogene Proteins

2014
Neocortical Tet3-mediated accumulation of 5-hydroxymethylcytosine promotes rapid behavioral adaptation.
    Proceedings of the National Academy of Sciences of the United States of America, 2014, May-13, Volume: 111, Issue:19

    Topics: 5-Methylcytosine; Adaptation, Physiological; Animals; Behavior, Animal; Conditioning, Psychological; Cytosine; Dioxygenases; DNA-Binding Proteins; Epigenesis, Genetic; Extinction, Psychological; Fear; Genome-Wide Association Study; Male; Mice; Mice, Inbred C57BL; Mice, Knockout; Neocortex; Neurons; Proto-Oncogene Proteins

2014
Association of global DNA methylation and global DNA hydroxymethylation with metals and other exposures in human blood DNA samples.
    Environmental health perspectives, 2014, Volume: 122, Issue:9

    Topics: 5-Methylcytosine; Aged; Arsenic; Cadmium; Cross-Sectional Studies; Cytosine; DNA; DNA Methylation; Environmental Exposure; Epigenesis, Genetic; Female; Humans; Longitudinal Studies; Male; Metals; Middle Aged

2014
TET1 exerts its tumor suppressor function by interacting with p53-EZH2 pathway in gastric cancer.
    Journal of biomedical nanotechnology, 2014, Volume: 10, Issue:7

    Topics: 5-Methylcytosine; Animals; Biomarkers, Tumor; Cell Line, Tumor; Cell Proliferation; Cytosine; Dioxygenases; DNA-Activated Protein Kinase; DNA-Binding Proteins; Down-Regulation; Enhancer of Zeste Homolog 2 Protein; Gastric Mucosa; Humans; Ki-67 Antigen; Mice; Mixed Function Oxygenases; Nuclear Proteins; Phosphorylation; Phosphoserine; Polycomb Repressive Complex 2; Protein Binding; Proto-Oncogene Proteins; Signal Transduction; Stomach Neoplasms; Tissue Array Analysis; Tumor Suppressor Protein p53; Up-Regulation

2014
PRIMA-1 selectively induces global DNA demethylation in p53 mutant-type thyroid cancer cells.
    Journal of biomedical nanotechnology, 2014, Volume: 10, Issue:7

    Topics: 5-Methylcytosine; Aza Compounds; bcl-2-Associated X Protein; Bridged Bicyclo Compounds, Heterocyclic; Cell Cycle Proteins; Cell Line, Tumor; Cell Proliferation; Cyclin-Dependent Kinase Inhibitor p21; Cytosine; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA-Binding Proteins; Down-Regulation; Gene Expression Regulation, Neoplastic; Humans; Mixed Function Oxygenases; Models, Biological; Mutation; Nuclear Proteins; Proto-Oncogene Proteins; Thyroid Neoplasms; Tumor Suppressor Protein p53; Up-Regulation

2014
Programming and inheritance of parental DNA methylomes in mammals.
    Cell, 2014, May-08, Volume: 157, Issue:4

    Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; DNA Methylation; Embryo, Mammalian; Embryonic Development; Female; Gene Expression Regulation, Developmental; Genomic Imprinting; Male; Mice; Mice, Inbred C57BL; Mice, Inbred DBA; Promoter Regions, Genetic

2014
Structural basis for hydroxymethylcytosine recognition by the SRA domain of UHRF2.
    Molecular cell, 2014, Jun-05, Volume: 54, Issue:5

    Topics: 5-Methylcytosine; Binding Sites; Crystallography, X-Ray; Cytosine; Humans; Hydrogen Bonding; Models, Molecular; Oligonucleotides; Protein Binding; Protein Structure, Secondary; Protein Structure, Tertiary; Ubiquitin-Protein Ligases

2014
TET1-mediated hydroxymethylation facilitates hypoxic gene induction in neuroblastoma.
    Cell reports, 2014, Jun-12, Volume: 7, Issue:5

    Topics: 5-Methylcytosine; Cell Hypoxia; Cell Line, Tumor; Cytosine; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Humans; Hypoxia-Inducible Factor 1, alpha Subunit; Mixed Function Oxygenases; Neuroblastoma; Proto-Oncogene Proteins; Response Elements; Up-Regulation

2014
Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA.
    Nature chemical biology, 2014, Volume: 10, Issue:7

    Topics: 5-Methylcytosine; Animals; Base Sequence; Carbon Isotopes; Chromatin Assembly and Disassembly; Chromatography, Liquid; Cytosine; Dioxygenases; DNA; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression; Mice; Molecular Sequence Data; Oxidation-Reduction; Pentoxyl; Protein Binding; Proto-Oncogene Proteins; Spectrometry, Mass, Electrospray Ionization; Thymine; Transcription Factors

2014
Deamination features of 5-hydroxymethylcytosine, a radical and enzymatic DNA oxidation product.
    Journal of molecular modeling, 2014, Volume: 20, Issue:6

    Topics: 5-Methylcytosine; Computer Simulation; Cytosine; Deamination; DNA; Energy Transfer; Hydrolysis; Models, Chemical; Models, Molecular; Molecular Structure; Oxidation-Reduction; Quantum Theory; Structure-Activity Relationship; Water

2014
TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells.
    Nucleic acids research, 2014, Volume: 42, Issue:11

    Topics: 5-Methylcytosine; Catalytic Domain; Cell Differentiation; CpG Islands; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; HEK293 Cells; Humans; Mixed Function Oxygenases; Proto-Oncogene Proteins; Transcription, Genetic

2014
High levels of global DNA methylation are an independent adverse prognostic factor in a series of 90 patients with de novo myelodysplastic syndrome.
    Leukemia research, 2014, Volume: 38, Issue:8

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Bone Marrow; Cytosine; DNA; DNA Methylation; Female; Humans; Male; Middle Aged; Myelodysplastic Syndromes; Prognosis; Survival Analysis

2014
CRISPR/Cas9-mediated phage resistance is not impeded by the DNA modifications of phage T4.
    PloS one, 2014, Volume: 9, Issue:6

    Topics: 5-Methylcytosine; Bacteriophage T4; Clustered Regularly Interspaced Short Palindromic Repeats; CRISPR-Associated Proteins; CRISPR-Cas Systems; Cytosine; DNA, Bacterial; Endonucleases; Escherichia coli; Streptococcus pyogenes

2014
Increased 5-hydroxymethylcytosine and decreased 5-methylcytosine are indicators of global epigenetic dysregulation in diffuse intrinsic pontine glioma.
    Acta neuropathologica communications, 2014, Jun-03, Volume: 2

    Topics: 5-Methylcytosine; Age Factors; Brain Stem Neoplasms; Child; Child, Preschool; Cytosine; DNA Methylation; Epigenomics; Female; Gene Expression Regulation, Neoplastic; Glioma; Humans; Male; Statistics, Nonparametric; Tissue Array Analysis

2014
Structure of 5-hydroxymethylcytosine-specific restriction enzyme, AbaSI, in complex with DNA.
    Nucleic acids research, 2014, Volume: 42, Issue:12

    Topics: 5-Methylcytosine; CCAAT-Enhancer-Binding Proteins; Cytosine; Dimerization; DNA; DNA Cleavage; DNA Restriction Enzymes; Endodeoxyribonucleases; Models, Molecular; Nuclear Proteins; Protein Structure, Tertiary; Ubiquitin-Protein Ligases

2014
Guanine- 5-carboxylcytosine base pairs mimic mismatches during DNA replication.
    Scientific reports, 2014, Jun-09, Volume: 4

    Topics: 5-Methylcytosine; Base Pairing; Cell Proliferation; Cytosine; DNA; DNA Mismatch Repair; DNA Replication; Epigenesis, Genetic; Guanine; Humans; Thymine DNA Glycosylase

2014
Distinct global DNA methylation status in B-cell lymphomas: immunohistochemical study of 5-methylcytosine and 5-hydroxymethylcytosine.
    Journal of clinical and experimental hematopathology : JCEH, 2014, Volume: 54, Issue:1

    Topics: 5-Methylcytosine; Adolescent; Adult; Aged; Aged, 80 and over; Cytosine; DNA Methylation; Epigenesis, Genetic; Epigenomics; Female; Humans; Immunohistochemistry; Lymphoma, B-Cell; Male; Middle Aged; Young Adult

2014
Distinct and overlapping control of 5-methylcytosine and 5-hydroxymethylcytosine by the TET proteins in human cancer cells.
    Genome biology, 2014, Jun-23, Volume: 15, Issue:6

    Topics: 5-Methylcytosine; Cell Differentiation; Cell Line, Tumor; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Gene Knockdown Techniques; Humans; Mixed Function Oxygenases; Promoter Regions, Genetic; Proto-Oncogene Proteins; Sequence Analysis, DNA

2014
Clinical and biological impact of TET2 mutations and expression in younger adult AML patients treated within the EORTC/GIMEMA AML-12 clinical trial.
    Annals of hematology, 2014, Volume: 93, Issue:8

    Topics: 5-Methylcytosine; Adolescent; Adult; Animals; Chlorocebus aethiops; Clinical Trials as Topic; COS Cells; Cytosine; Dioxygenases; DNA (Cytosine-5-)-Methyltransferases; DNA Methyltransferase 3A; DNA-Binding Proteins; Female; Gene Expression Regulation, Leukemic; Humans; Isocitrate Dehydrogenase; Kaplan-Meier Estimate; Leukemia, Myeloid, Acute; Male; Multicenter Studies as Topic; Mutation; Neoplasm Proteins; Prognosis; Prospective Studies; Proto-Oncogene Proteins; Recombinant Fusion Proteins; RNA, Messenger; RNA, Neoplasm; Transfection; Young Adult

2014
Dynamics of genomic 5-hydroxymethylcytosine during mouse oocyte growth.
    Genes to cells : devoted to molecular & cellular mechanisms, 2014, Volume: 19, Issue:8

    Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA-Binding Proteins; Female; Genome; Mice, Inbred C57BL; Oocytes; Proto-Oncogene Proteins; Zygote

2014
5-Hydroxymethylcytosine promotes proliferation of human uterine leiomyoma: a biological link to a new epigenetic modification in benign tumors.
    The Journal of clinical endocrinology and metabolism, 2014, Volume: 99, Issue:11

    Topics: 5-Methylcytosine; Adult; Cell Proliferation; Cytosine; Epigenesis, Genetic; Female; Humans; Leiomyoma; Middle Aged; Uterine Neoplasms

2014
Comparison of the absolute level of epigenetic marks 5-methylcytosine, 5-hydroxymethylcytosine, and 5-hydroxymethyluracil between human leukocytes and sperm.
    Biology of reproduction, 2014, Volume: 91, Issue:3

    Topics: 5-Methylcytosine; Adult; Biomarkers; Chromatography, High Pressure Liquid; Cytosine; Deoxycytidine; DNA; DNA Methylation; Epigenesis, Genetic; Humans; Leukocytes; Male; Pentoxyl; Poland; Spectrometry, Mass, Electrospray Ionization; Spermatozoa; Tandem Mass Spectrometry; Thymidine; Up-Regulation

2014
Epigenetically modified nucleotides in chronic heroin and cocaine treated mice.
    Toxicology letters, 2014, Sep-17, Volume: 229, Issue:3

    Topics: 5-Methylcytosine; Animals; Brain; Brain Chemistry; Cocaine; Cytosine; Dose-Response Relationship, Drug; Epigenesis, Genetic; Heroin; Liver; Male; Mice; Mice, Inbred C57BL

2014
Dissecting the dynamic changes of 5-hydroxymethylcytosine in T-cell development and differentiation.
    Proceedings of the National Academy of Sciences of the United States of America, 2014, Aug-12, Volume: 111, Issue:32

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cell Lineage; Cytosine; DNA Methylation; DNA-Binding Proteins; Enhancer Elements, Genetic; Female; Gene Expression Regulation, Developmental; Mice; Mice, Inbred C57BL; Mice, Transgenic; Proto-Oncogene Proteins; T-Lymphocyte Subsets; T-Lymphocytes

2014
Spectroscopic quantification of 5-hydroxymethylcytosine in genomic DNA.
    Analytical chemistry, 2014, Aug-19, Volume: 86, Issue:16

    Topics: 5-Methylcytosine; Animals; Base Sequence; Cytosine; DNA; DNA Methylation; DNA, Fungal; Equipment Design; Genomics; Limit of Detection; Mice; Molecular Sequence Data; Saccharomyces cerevisiae; Spectrometry, Fluorescence

2014
Tet-mediated formation of 5-hydroxymethylcytosine in RNA.
    Journal of the American Chemical Society, 2014, Aug-20, Volume: 136, Issue:33

    Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA-Binding Proteins; Embryonic Stem Cells; HEK293 Cells; Humans; Mice; Mixed Function Oxygenases; Proto-Oncogene Proteins; RNA

2014
5-Hydroxymethylcytosine expression in metastatic melanoma versus nodal nevus in sentinel lymph node biopsies.
    Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 2015, Volume: 28, Issue:2

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Biomarkers, Tumor; Cytosine; Female; Fluorescent Antibody Technique; Humans; Immunohistochemistry; Lymph Nodes; Lymphatic Metastasis; Male; Melanoma; Middle Aged; Nevus; Sentinel Lymph Node Biopsy; Skin Neoplasms

2015
Long noncoding RNA TARID directs demethylation and activation of the tumor suppressor TCF21 via GADD45A.
    Molecular cell, 2014, Aug-21, Volume: 55, Issue:4

    Topics: 5-Methylcytosine; Basic Helix-Loop-Helix Transcription Factors; Cell Cycle Proteins; Cell Line, Tumor; CpG Islands; Cytosine; DNA Methylation; DNA Repair; Gene Expression Regulation, Neoplastic; Genome, Human; HEK293 Cells; Humans; Molecular Sequence Data; Neoplasms; Nuclear Proteins; Promoter Regions, Genetic; RNA, Long Noncoding; Thymine DNA Glycosylase

2014
5-Hydroxymethylcytosine is a useful marker to differentiate between dermatofibrosarcoma protuberans and dermatofibroma.
    Journal of the European Academy of Dermatology and Venereology : JEADV, 2016, Volume: 30, Issue:1

    Topics: 5-Methylcytosine; Biomarkers, Tumor; Cytosine; Dermatofibrosarcoma; Humans; Skin Neoplasms

2016
Robust quantitative assessments of cytosine modifications and changes in the expressions of related enzymes in gastric cancer.
    Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association, 2015, Volume: 18, Issue:3

    Topics: 5-Methylcytosine; Aged; Chromatography, Liquid; Cytosine; Deoxycytidine; Dioxygenases; DNA-Binding Proteins; Enzymes; Female; Gene Expression Regulation, Neoplastic; HEK293 Cells; Humans; Isocitrate Dehydrogenase; Male; Middle Aged; Mixed Function Oxygenases; Polymorphism, Single Nucleotide; Proto-Oncogene Proteins; Stomach Neoplasms; Tandem Mass Spectrometry

2015
Insights into DNA hydroxymethylation in the honeybee from in-depth analyses of TET dioxygenase.
    Open biology, 2014, Volume: 4, Issue:8

    Topics: 5-Methylcytosine; Alternative Splicing; Amino Acid Sequence; Animals; Bees; Brain; Catalytic Domain; Cytosine; Dioxygenases; DNA Methylation; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; HEK293 Cells; Humans; Insect Proteins; Male; Molecular Sequence Data; Organ Specificity; Ovary; Sequence Alignment; Testis; Transgenes

2014
5-hydroxymethylcytosine represses the activity of enhancers in embryonic stem cells: a new epigenetic signature for gene regulation.
    BMC genomics, 2014, Aug-09, Volume: 15

    Topics: 5-Methylcytosine; Animals; Binding Sites; Cell Lineage; Cytosine; Embryonic Stem Cells; Enhancer Elements, Genetic; Epigenesis, Genetic; Histones; Mice; RNA, Messenger; Transcription Factors

2014
Decrease of 5-hydroxymethylcytosine in rat liver with subchronic exposure to genotoxic carcinogens riddelliine and aristolochic acid.
    Molecular carcinogenesis, 2015, Volume: 54, Issue:11

    Topics: 5-Methylcytosine; Animals; Aristolochic Acids; Carcinogenesis; Carcinogens; Cytosine; DNA-Binding Proteins; Epigenesis, Genetic; Liver; Mutation; Neoplasms; Pyrrolizidine Alkaloids; Rats; Rats, Inbred F344; Rats, Transgenic

2015
Application of a low cost array-based technique - TAB-Array - for quantifying and mapping both 5mC and 5hmC at single base resolution in human pluripotent stem cells.
    Genomics, 2014, Volume: 104, Issue:5

    Topics: 5-Methylcytosine; Cell Differentiation; Cells, Cultured; Cytosine; DNA Methylation; Epigenesis, Genetic; Humans; Molecular Sequence Data; Myoblasts, Cardiac; Neural Stem Cells; Pluripotent Stem Cells; Sequence Analysis, DNA

2014
5-Hydroxymethylation marks a class of neuronal gene regulated by intragenic methylcytosine levels.
    Genomics, 2014, Volume: 104, Issue:5

    Topics: 5-Methylcytosine; Animals; Brain; Cytosine; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; Embryonic Stem Cells; Enzyme Inhibitors; Gene Expression Regulation; Gene Knockout Techniques; Genomic Imprinting; Germ Cells; Humans; Mice; Neurons; NIH 3T3 Cells; Sequence Analysis, DNA; Transcription, Genetic

2014
Alterations in global DNA methylation and hydroxymethylation are not detected in Alzheimer's disease.
    Neuropathology and applied neurobiology, 2015, Volume: 41, Issue:4

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Alzheimer Disease; Cytosine; DNA Methylation; Entorhinal Cortex; Epigenesis, Genetic; Female; Humans; Male; Middle Aged

2015
Environmental enrichment modulates 5-hydroxymethylcytosine dynamics in hippocampus.
    Genomics, 2014, Volume: 104, Issue:5

    Topics: 5-Methylcytosine; Aging; Animals; Cytosine; DNA Methylation; Gene Expression Regulation; Gene-Environment Interaction; Hippocampus; Learning; Mice

2014
Hydroxymethylated cytosines are associated with elevated C to G transversion rates.
    PLoS genetics, 2014, Volume: 10, Issue:9

    Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; DNA Methylation; Humans; Mice; Mutation

2014
JBP1-seq: a fast and efficient method for genome-wide profiling of 5hmC.
    Genomics, 2014, Volume: 104, Issue:5

    Topics: 5-Methylcytosine; Brain; Cytosine; DNA Methylation; Genome, Human; High-Throughput Nucleotide Sequencing; Humans; Magnetic Phenomena; Protein-Arginine N-Methyltransferases; Recombinant Proteins; Sequence Analysis, DNA

2014
RRHP: a tag-based approach for 5-hydroxymethylcytosine mapping at single-site resolution.
    Genome biology, 2014, Sep-24, Volume: 15, Issue:9

    Topics: 5-Methylcytosine; Cytosine; DNA Methylation; Gene Library; High-Throughput Nucleotide Sequencing; Humans; Liver Neoplasms; Molecular Sequence Annotation; Sequence Analysis, DNA

2014
[Simultaneous analysis of global DNA methylation and hydroxymethylation in tissues by liquid chromatography-tandem mass spectrometry].
    Se pu = Chinese journal of chromatography, 2014, Volume: 32, Issue:7

    Topics: 5-Methylcytosine; Animals; Chromatography, Liquid; Cytidine; Cytosine; Deoxyguanosine; DNA; DNA Methylation; Rats; Spectrometry, Mass, Electrospray Ionization; Tandem Mass Spectrometry

2014
Exposure to arsenic via drinking water induces 5-hydroxymethylcytosine alteration in rat.
    The Science of the total environment, 2014, Nov-01, Volume: 497-498

    Topics: 5-Methylcytosine; Animals; Arsenic; Cytosine; DNA Methylation; Drinking Water; Epigenesis, Genetic; Gene Expression Regulation; Male; Rats; Rats, Sprague-Dawley; Water Pollutants, Chemical

2014
5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation.
    Molecular cell, 2014, Oct-23, Volume: 56, Issue:2

    Topics: 5-Methylcytosine; Animals; Base Sequence; Cell Differentiation; Cell Line; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Enhancer Elements, Genetic; Mice; Mice, Knockout; Oxidation-Reduction; Promoter Regions, Genetic; Proto-Oncogene Proteins; Sequence Analysis, DNA; Transcriptome; Zinc Fingers

2014
5-Hydroxymethylcytosine plays a critical role in glioblastomagenesis by recruiting the CHTOP-methylosome complex.
    Cell reports, 2014, Oct-09, Volume: 9, Issue:1

    Topics: 5-Methylcytosine; Acetylation; Brain Neoplasms; Carcinogenesis; Chromatin; Cytosine; DNA-Binding Proteins; Gene Expression Regulation, Neoplastic; Glioblastoma; HEK293 Cells; Histones; Humans; Methylation; Mixed Function Oxygenases; Nuclear Proteins; Protein-Arginine N-Methyltransferases; Proto-Oncogene Proteins; Repressor Proteins; Transcription Factors; Transcription, Genetic

2014
Elevated 5-hydroxymethylcytosine in the Engrailed-2 (EN-2) promoter is associated with increased gene expression and decreased MeCP2 binding in autism cerebellum.
    Translational psychiatry, 2014, Oct-07, Volume: 4

    Topics: 5-Methylcytosine; Adolescent; Autistic Disorder; Cerebellum; Cytosine; Female; Gene Expression; Homeodomain Proteins; Humans; Male; Methyl-CpG-Binding Protein 2; Nerve Tissue Proteins; Promoter Regions, Genetic

2014
Trace analysis of methylated and hydroxymethylated cytosines in DNA by isotope-dilution LC-MS/MS: first evidence of DNA methylation in Caenorhabditis elegans.
    The Biochemical journal, 2015, Jan-01, Volume: 465, Issue:1

    Topics: 5-Methylcytosine; Animals; Azacitidine; Cadmium; Caenorhabditis elegans; Chromatography, Liquid; Cytosine; Decitabine; Deoxycytidine; DNA; DNA Methylation; Isotope Labeling; Online Systems; Reproducibility of Results; Solid Phase Extraction; Tandem Mass Spectrometry

2015
White matter tract and glial-associated changes in 5-hydroxymethylcytosine following chronic cerebral hypoperfusion.
    Brain research, 2014, Dec-10, Volume: 1592

    Topics: 5-Methylcytosine; Animals; Autophagy-Related Proteins; Calcium-Binding Proteins; Cerebrovascular Disorders; Chronic Disease; Corpus Callosum; Cytosine; Dioxygenases; Disease Models, Animal; DNA-Binding Proteins; Gray Matter; Immunohistochemistry; Intracellular Signaling Peptides and Proteins; Male; Mice, Inbred C57BL; Microfilament Proteins; Neural Stem Cells; Neuroglia; Oxidative Stress; Pilot Projects; Proto-Oncogene Proteins; Random Allocation; White Matter

2014
A B-cell targeting virus disrupts potentially protective genomic methylation patterns in lymphoid tissue by increasing global 5-hydroxymethylcytosine levels.
    Veterinary research, 2014, Oct-23, Volume: 45

    Topics: 5-Methylcytosine; Animals; B-Lymphocytes; Birnaviridae Infections; Bursa of Fabricius; Chickens; Cytosine; DNA Methylation; Genome; Infectious bursal disease virus; Poultry Diseases

2014
Loss of expression of 5-hydroxymethylcytosine in CD30-positive cutaneous lymphoproliferative disorders.
    Journal of cutaneous pathology, 2014, Volume: 41, Issue:12

    Topics: 5-Methylcytosine; Adolescent; Adult; Aged; Aged, 80 and over; Biomarkers, Tumor; Case-Control Studies; Child; Cytosine; Epigenesis, Genetic; Female; Humans; Immunohistochemistry; Ki-1 Antigen; Lymphoma, Primary Cutaneous Anaplastic Large Cell; Lymphomatoid Papulosis; Male; Middle Aged; Retrospective Studies; Skin Neoplasms; Young Adult

2014
Endonuclease G preferentially cleaves 5-hydroxymethylcytosine-modified DNA creating a substrate for recombination.
    Nucleic acids research, 2014, Dec-01, Volume: 42, Issue:21

    Topics: 5-Methylcytosine; Animals; Catalytic Domain; Cell Nucleus; Cytosine; Dioxygenases; DNA; DNA Cleavage; Endodeoxyribonucleases; HeLa Cells; Histones; Humans; Intracellular Signaling Peptides and Proteins; Mice; Mice, Inbred C57BL; Recombination, Genetic; Tumor Suppressor p53-Binding Protein 1

2014
Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing.
    Nature biotechnology, 2014, Volume: 32, Issue:12

    Topics: 5-Methylcytosine; Animals; Base Sequence; Chromatin; Cytosine; DNA Methylation; DNA Repair; Embryonic Stem Cells; Gene Expression Regulation; High-Throughput Nucleotide Sequencing; Methyltransferases; Mice; Thymine DNA Glycosylase

2014
HTS for SMFS, organohalide respiration, new epigenetic mark, and a decoy receptor.
    Chemistry & biology, 2014, Oct-23, Volume: 21, Issue:10

    Topics: 5-Methylcytosine; Cytosine; DNA Methylation; Epigenomics; High-Throughput Screening Assays; Hydrocarbons, Halogenated; Hydrolases; Microfluidic Analytical Techniques; Oligonucleotide Array Sequence Analysis; Tumor Necrosis Factor Decoy Receptors

2014
5-hydroxymethylcytosine is not present in appreciable quantities in Arabidopsis DNA.
    G3 (Bethesda, Md.), 2014, Nov-06, Volume: 5, Issue:1

    Topics: 5-Methylcytosine; Arabidopsis; Chromatography, Thin Layer; Cytosine; DNA, Plant; Enzyme-Linked Immunosorbent Assay; Immunoprecipitation; Mass Spectrometry; Real-Time Polymerase Chain Reaction

2014
DNA modifications: Another stable base in DNA.
    Nature chemistry, 2014, Volume: 6, Issue:12

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; Humans

2014
5-Hydroxymethylcytosine is a predominantly stable DNA modification.
    Nature chemistry, 2014, Volume: 6, Issue:12

    Topics: 5-Methylcytosine; Animals; Cell Cycle; Cell Proliferation; Cytosine; DNA; DNA Methylation; HCT116 Cells; Humans; MCF-7 Cells; Mice; Mice, Inbred C57BL

2014
Single base resolution analysis of 5-methylcytosine and 5-hydroxymethylcytosine by RRBS and TAB-RRBS.
    Methods in molecular biology (Clifton, N.J.), 2015, Volume: 1238

    Topics: 5-Methylcytosine; Cytosine; Deoxyribonuclease HpaII; Glycosylation; Humans; Oxidation-Reduction; Sequence Analysis, DNA; Sulfites

2015
Quantification of 5-methylcytosine, 5-hydroxymethylcytosine and 5-carboxylcytosine from the blood of cancer patients by an enzyme-based immunoassay.
    Analytica chimica acta, 2014, Dec-10, Volume: 852

    Topics: 5-Methylcytosine; Cytosine; DNA; Epigenesis, Genetic; Humans; Immunoenzyme Techniques; Limit of Detection; Neoplasms

2014
Genomics special issue on 5-hydroxymethylation.
    Genomics, 2014, Volume: 104, Issue:5

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Epigenesis, Genetic; Epigenomics; Humans

2014
Label free detection of 5'hydroxymethylcytosine within CpG islands using optical sensors.
    Biosensors & bioelectronics, 2015, Mar-15, Volume: 65

    Topics: 5-Methylcytosine; Animals; Antibodies, Immobilized; Biosensing Techniques; CpG Islands; Cytosine; DNA Methylation; Optics and Photonics

2015
5-Hydroxymethylcytosine, the "Sixth Base", during brain development and ageing.
    Journal of neural transmission (Vienna, Austria : 1996), 2015, Volume: 122, Issue:7

    Topics: 5-Methylcytosine; Adolescent; Adult; Aged; Aged, 80 and over; Aging; Analysis of Variance; Animals; Animals, Newborn; Brain; Cytosine; Female; Fetus; Gestational Age; Humans; Male; Mice; Mice, Inbred C57BL; Middle Aged; Phosphopyruvate Hydratase; Young Adult

2015
Role of 5-hydroxymethylcytosine level in diagnosis and prognosis prediction of intrahepatic cholangiocarcinoma.
    Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine, 2015, Volume: 36, Issue:4

    Topics: 5-Methylcytosine; Adolescent; Adult; Aged; Bile Duct Neoplasms; Bile Ducts, Intrahepatic; Cholangiocarcinoma; Cytosine; Disease-Free Survival; Female; Humans; Kaplan-Meier Estimate; Male; Middle Aged; Prognosis

2015
DNA hydroxymethylation profiling reveals that WT1 mutations result in loss of TET2 function in acute myeloid leukemia.
    Cell reports, 2014, Dec-11, Volume: 9, Issue:5

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cytosine; Dioxygenases; DNA-Binding Proteins; Enhancer Elements, Genetic; Gene Expression Regulation, Neoplastic; Hematopoiesis; Humans; Leukemia, Myeloid, Acute; Mice, Knockout; Mutation; Promoter Regions, Genetic; Protein Binding; Proto-Oncogene Proteins; Sequence Analysis, DNA; WT1 Proteins

2014
Chemical display of pyrimidine bases flipped out by modification-dependent restriction endonucleases of MspJI and PvuRts1I families.
    PloS one, 2014, Volume: 9, Issue:12

    Topics: 5-Methylcytosine; Bacterial Proteins; Catalytic Domain; Cytosine; DNA Restriction Enzymes; DNA, Bacterial; Models, Molecular; Protein Binding

2014
Chromosome hydroxymethylation patterns in human zygotes and cleavage-stage embryos.
    Reproduction (Cambridge, England), 2015, Volume: 149, Issue:3

    Topics: 5-Methylcytosine; Blastocyst; Cytosine; DNA Methylation; Female; Genome, Human; Humans; Zygote

2015
Integrated analyses of DNA methylation and hydroxymethylation reveal tumor suppressive roles of ECM1, ATF5, and EOMES in human hepatocellular carcinoma.
    Genome biology, 2014, Dec-03, Volume: 15, Issue:12

    Topics: 5-Methylcytosine; Activating Transcription Factors; Carcinoma, Hepatocellular; Cell Line, Tumor; Comparative Genomic Hybridization; Cytosine; DNA Methylation; Epigenesis, Genetic; Extracellular Matrix Proteins; Gene Expression Regulation, Neoplastic; Genetic Predisposition to Disease; Humans; Liver Neoplasms; Molecular Sequence Data; Promoter Regions, Genetic; Sequence Analysis, DNA; T-Box Domain Proteins

2014
DNA cytosine methylation and hydroxymethylation at the borders.
    Epigenomics, 2014, Volume: 6, Issue:6

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation; Humans; Promoter Regions, Genetic

2014
Epigenetic modification of the PD-1 (Pdcd1) promoter in effector CD4(+) T cells tolerized by peptide immunotherapy.
    eLife, 2014, Dec-29, Volume: 3

    Topics: 5-Methylcytosine; Animals; CD4-Positive T-Lymphocytes; Culture Media; Cytosine; DNA Methylation; Epigenesis, Genetic; Immunotherapy; Mice; Mice, Inbred C57BL; Peptides; Programmed Cell Death 1 Receptor; Promoter Regions, Genetic

2014
Detection of human urinary 5-hydroxymethylcytosine by stable isotope dilution HPLC-MS/MS analysis.
    Analytical chemistry, 2015, Feb-03, Volume: 87, Issue:3

    Topics: 5-Methylcytosine; Adult; Bicarbonates; Chromatography, High Pressure Liquid; Cytosine; DNA Methylation; Female; Humans; Indicator Dilution Techniques; Isotopes; Male; Solid Phase Extraction; Tandem Mass Spectrometry; Young Adult

2015
Programmable sensors of 5-hydroxymethylcytosine.
    Journal of the American Chemical Society, 2015, Jan-14, Volume: 137, Issue:1

    Topics: 5-Methylcytosine; Cytosine; DNA; Epigenesis, Genetic; Genetic Engineering; Models, Molecular; Molecular Structure; Tandem Repeat Sequences; Trans-Activators

2015
Induction of chronic oxidative stress, chronic inflammation and aberrant patterns of DNA methylation in the liver of titanium-exposed CBA/CaJ mice.
    International journal of radiation biology, 2015, Volume: 91, Issue:5

    Topics: 5-Methylcytosine; Animals; Chromosomal Instability; Cytosine; DNA Methylation; Dose-Response Relationship, Radiation; Epigenesis, Genetic; Hematopoietic Stem Cells; Inflammation; Interleukin-1beta; Interleukin-6; Lipid Peroxidation; Liver; Male; Mice; Mice, Inbred CBA; NF-kappa B; Oxidative Stress; Time Factors; Titanium; Tumor Necrosis Factor-alpha

2015
Ethanol deregulates Mecp2/MeCP2 in differentiating neural stem cells via interplay between 5-methylcytosine and 5-hydroxymethylcytosine at the Mecp2 regulatory elements.
    Experimental neurology, 2015, Volume: 265

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cells, Cultured; Cytosine; Ethanol; Methyl-CpG-Binding Protein 2; Mice; Neural Stem Cells; Regulatory Elements, Transcriptional

2015
Understanding the structural and dynamic consequences of DNA epigenetic modifications: computational insights into cytosine methylation and hydroxymethylation.
    Epigenetics, 2014, Volume: 9, Issue:12

    Topics: 5-Methylcytosine; CpG Islands; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Models, Molecular; Molecular Dynamics Simulation; Nucleic Acid Conformation; Protein Binding

2014
Differential stabilities and sequence-dependent base pair opening dynamics of Watson-Crick base pairs with 5-hydroxymethylcytosine, 5-formylcytosine, or 5-carboxylcytosine.
    Biochemistry, 2015, Feb-10, Volume: 54, Issue:5

    Topics: 5-Methylcytosine; Cytosine; DNA; Oligonucleotides; Thymine DNA Glycosylase

2015
A sensitive approach to map genome-wide 5-hydroxymethylcytosine and 5-formylcytosine at single-base resolution.
    Molecular cell, 2015, Feb-19, Volume: 57, Issue:4

    Topics: 5-Methylcytosine; Animals; Base Sequence; Cytosine; DNA Restriction Enzymes; Embryonic Stem Cells; Epigenesis, Genetic; Gene Library; Histones; Mice; Restriction Mapping

2015
Spatial distribution of 5-hydroxymethyl cytosine in rat brain and temporal distribution in striatum.
    Neurochemical research, 2015, Volume: 40, Issue:4

    Topics: 5-Methylcytosine; Animals; Brain; Corpus Striatum; Cytosine; Male; Oxidopamine; Parkinson Disease; Rats; Rats, Sprague-Dawley

2015
Rapid reprogramming of epigenetic and transcriptional profiles in mammalian culture systems.
    Genome biology, 2015, Feb-04, Volume: 16

    Topics: 5-Methylcytosine; Adaptation, Biological; Animals; Cell Culture Techniques; Cells, Cultured; Cellular Reprogramming; Cytosine; Dioxygenases; DNA Methylation; Epigenesis, Genetic; Fibroblasts; Genetic Loci; Mammals; Mice, Inbred C57BL; Transcriptome

2015
Analysis of nanopore data using hidden Markov models.
    Bioinformatics (Oxford, England), 2015, Jun-15, Volume: 31, Issue:12

    Topics: 5-Methylcytosine; Algorithms; Cytosine; DNA Methylation; Epigenomics; High-Throughput Nucleotide Sequencing; Humans; Markov Chains; Nanopores; Sequence Alignment; Sequence Analysis, DNA

2015
The Tet1 and histone methylation expression pattern in dairy goat testis.
    Theriogenology, 2015, Apr-15, Volume: 83, Issue:7

    Topics: 5-Methylcytosine; Animals; Cells, Cultured; Cytosine; Dairying; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Epigenesis, Genetic; Fluorescent Antibody Technique; Gene Expression; Goats; Histones; Male; Methylation; Spermatogenesis; Spermatogonia; Testis

2015
Formation and abundance of 5-hydroxymethylcytosine in RNA.
    Chembiochem : a European journal of chemical biology, 2015, Mar-23, Volume: 16, Issue:5

    Topics: 5-Methylcytosine; Animals; Chromatography, High Pressure Liquid; Cytosine; Mice; Mice, Inbred C57BL; Molecular Structure; Oxidation-Reduction; RNA; Tandem Mass Spectrometry

2015
The effect of a methyl-deficient diet on the global DNA methylation and the DNA methylation regulatory pathways.
    Journal of applied toxicology : JAT, 2015, Volume: 35, Issue:12

    Topics: 5-Methylcytosine; 8-Hydroxy-2'-Deoxyguanosine; Animals; Choline Deficiency; Cytosine; Deoxyguanosine; DNA Methylation; Fatty Liver; Gene Expression Regulation, Enzymologic; Liver; Male; Methionine; Mice, Inbred C57BL; Oxidative Stress; S-Adenosylhomocysteine; S-Adenosylmethionine

2015
Stella preserves maternal chromosome integrity by inhibiting 5hmC-induced γH2AX accumulation.
    EMBO reports, 2015, Volume: 16, Issue:5

    Topics: 5-Methylcytosine; Animals; Cell Division; Cell Line; Cells, Cultured; Chromosomal Instability; Chromosomal Proteins, Non-Histone; Chromosome Aberrations; Chromosome Segregation; Cytosine; Dioxygenases; DNA Methylation; DNA Replication; DNA-Binding Proteins; Embryo, Mammalian; Epigenesis, Genetic; Female; Gene Knockout Techniques; Histones; Male; Mice; Protein Transport; Proto-Oncogene Proteins; Repressor Proteins; Zygote

2015
5-Hydroxymethylcytosine and 5-formylcytosine containing deoxyoligonucleotides: facile syntheses and melting temperature studies.
    Bioorganic & medicinal chemistry letters, 2015, Mar-15, Volume: 25, Issue:6

    Topics: 5-Methylcytosine; Catalysis; Chromatography, High Pressure Liquid; Chromatography, Reverse-Phase; Copper; Cytosine; Oligonucleotides; Oxidation-Reduction; Transition Temperature

2015
Accurate measurement of 5-methylcytosine and 5-hydroxymethylcytosine in human cerebellum DNA by oxidative bisulfite on an array (OxBS-array).
    PloS one, 2015, Volume: 10, Issue:2

    Topics: 5-Methylcytosine; Adult; Cerebellum; Cytosine; DNA; DNA Methylation; Humans; Male; Oligonucleotide Array Sequence Analysis; Oxidation-Reduction; Reproducibility of Results; Sulfites

2015
Neighboring Genes Show Correlated Evolution in Gene Expression.
    Molecular biology and evolution, 2015, Volume: 32, Issue:7

    Topics: 5-Methylcytosine; Animals; Cerebellum; Chromosomes, Human, Pair 2; Computer Simulation; Cytosine; Evolution, Molecular; Female; Gene Expression Regulation; Genes; Histones; Humans; Lysine; Male; Methylation; Monte Carlo Method; Organ Specificity; Primates; Statistics, Nonparametric; Up-Regulation

2015
Hippocampal increase of 5-hmC in the glucocorticoid receptor gene following acute stress.
    Behavioural brain research, 2015, Jun-01, Volume: 286

    Topics: 3' Untranslated Regions; 5-Methylcytosine; Acute Disease; Animals; Cytosine; Disease Models, Animal; Hippocampus; Mice; Neurons; Random Allocation; Receptors, Glucocorticoid; Restraint, Physical; Stress, Psychological

2015
Genome-wide 5-hydroxymethylcytosine modification pattern is a novel epigenetic feature of globozoospermia.
    Oncotarget, 2015, Mar-30, Volume: 6, Issue:9

    Topics: 5-Methylcytosine; Case-Control Studies; Cell Shape; Cytosine; DNA; Epigenesis, Genetic; Gene Expression Profiling; Gene Expression Regulation, Developmental; Genetic Predisposition to Disease; Genome-Wide Association Study; Genomic Imprinting; Humans; Infertility, Male; Male; Phenotype; Sperm Motility; Spermatogenesis; Spermatozoa

2015
Role of Tet1 and 5-hydroxymethylcytosine in cocaine action.
    Nature neuroscience, 2015, Volume: 18, Issue:4

    Topics: 5-Methylcytosine; Animals; Behavior, Animal; Cocaine; Cytosine; DNA-Binding Proteins; Down-Regulation; Epigenesis, Genetic; Gene Expression; Male; Mice; Mice, Inbred C57BL; Nucleus Accumbens; Proto-Oncogene Proteins

2015
C/EBPβ (CEBPB) protein binding to the C/EBP|CRE DNA 8-mer TTGC|GTCA is inhibited by 5hmC and enhanced by 5mC, 5fC, and 5caC in the CG dinucleotide.
    Biochimica et biophysica acta, 2015, Volume: 1849, Issue:6

    Topics: 5-Methylcytosine; Animals; CCAAT-Enhancer-Binding Protein-beta; CCAAT-Enhancer-Binding Proteins; Crystallography, X-Ray; Cytosine; Cytosine Nucleotides; DNA; DNA Methylation; DNA-Binding Proteins; Embryonic Development; Nucleotide Motifs; Transcription Factors

2015
Cocaine shapes chromatin landscapes via Tet1.
    Nature neuroscience, 2015, Volume: 18, Issue:4

    Topics: 5-Methylcytosine; Animals; Cocaine; Cytosine; DNA-Binding Proteins; Gene Expression; Male; Nucleus Accumbens; Proto-Oncogene Proteins

2015
Post-conversion targeted capture of modified cytosines in mammalian and plant genomes.
    Nucleic acids research, 2015, Jul-13, Volume: 43, Issue:12

    Topics: 5-Methylcytosine; Alleles; Animals; Cell Line; Cytosine; DNA Methylation; Genome, Plant; Genomics; High-Throughput Nucleotide Sequencing; Humans; Mice; Polymorphism, Single Nucleotide; Sequence Analysis, DNA; Sulfites

2015
Genome-wide analysis of 5-hmC in the peripheral blood of systemic lupus erythematosus patients using an hMeDIP-chip.
    International journal of molecular medicine, 2015, Volume: 35, Issue:5

    Topics: 5-Methylcytosine; Case-Control Studies; Chromosome Mapping; Computational Biology; CpG Islands; Cytosine; DNA Methylation; Gene Expression Profiling; Gene Ontology; Genome-Wide Association Study; Humans; Lupus Erythematosus, Systemic; Oligonucleotide Array Sequence Analysis; Polymorphism, Single Nucleotide; Promoter Regions, Genetic; Signal Transduction

2015
Prognostic values of 5-hmC, 5-mC and TET2 in epithelial ovarian cancer.
    Archives of gynecology and obstetrics, 2015, Volume: 292, Issue:4

    Topics: 5-Methylcytosine; Adult; Aged; Biomarkers, Tumor; Carcinoma, Ovarian Epithelial; Case-Control Studies; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Female; Humans; Immunohistochemistry; Lymphatic Metastasis; Middle Aged; Neoplasm Grading; Neoplasm Staging; Neoplasms, Glandular and Epithelial; Ovarian Neoplasms; Prognosis; Proto-Oncogene Proteins; Survival Analysis

2015
TET3 is recruited by REST for context-specific hydroxymethylation and induction of gene expression.
    Cell reports, 2015, Apr-14, Volume: 11, Issue:2

    Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Mice; Neurons; Proto-Oncogene Proteins; Repressor Proteins; Retina; Transcriptional Activation

2015
5-hydroxymethylcytosine marks promoters in colon that resist DNA hypermethylation in cancer.
    Genome biology, 2015, Apr-01, Volume: 16

    Topics: 5-Methylcytosine; Cell Proliferation; Colonic Neoplasms; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Gene Expression Regulation, Neoplastic; HCT116 Cells; Humans; Proto-Oncogene Proteins

2015
The methylcytosine dioxygenase Tet2 promotes DNA demethylation and activation of cytokine gene expression in T cells.
    Immunity, 2015, Apr-21, Volume: 42, Issue:4

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cytokines; Cytosine; Dioxygenases; DNA; DNA Methylation; DNA-Binding Proteins; E1A-Associated p300 Protein; Epigenesis, Genetic; Gene Expression Regulation; Genome; Humans; Mice; Mice, Transgenic; Proto-Oncogene Proteins; STAT4 Transcription Factor; T-Box Domain Proteins; Th1 Cells; Th17 Cells

2015
TET1 is a tumor suppressor of hematopoietic malignancy.
    Nature immunology, 2015, Volume: 16, Issue:6

    Topics: 5-Methylcytosine; Animals; B-Lymphocytes; Cell Differentiation; Cell Lineage; Chromosomal Instability; Cytosine; DNA Methylation; DNA Repair; DNA-Binding Proteins; Embryonic Stem Cells; Epigenesis, Genetic; Exome; Gene Expression Profiling; Humans; Lymphoma, B-Cell; Mice; Mutation; Proto-Oncogene Proteins; Tumor Suppressor Proteins

2015
Regulation of telomeric i-motif stability by 5-methylcytosine and 5-hydroxymethylcytosine modification.
    Organic & biomolecular chemistry, 2015, May-28, Volume: 13, Issue:20

    Topics: 5-Methylcytosine; Circular Dichroism; Cytosine; DNA; DNA Methylation; Humans; Nucleotide Motifs; Protein Structure, Tertiary; Telomere; Temperature

2015
The hypomethylating agent Decitabine causes a paradoxical increase in 5-hydroxymethylcytosine in human leukemia cells.
    Scientific reports, 2015, Apr-22, Volume: 5

    Topics: 5-Methylcytosine; Azacitidine; Catalytic Domain; Chromatography, High Pressure Liquid; CpG Islands; Cytosine; Decitabine; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA-Binding Proteins; Enzyme-Linked Immunosorbent Assay; HL-60 Cells; Humans; Immunohistochemistry; Leukemia, Myeloid, Acute; MCF-7 Cells; Microscopy, Fluorescence; Mixed Function Oxygenases; Protein Binding; Proto-Oncogene Proteins; Spectrometry, Fluorescence; Tandem Mass Spectrometry

2015
The histone deacetylase SIRT6 controls embryonic stem cell fate via TET-mediated production of 5-hydroxymethylcytosine.
    Nature cell biology, 2015, Volume: 17, Issue:5

    Topics: 5-Methylcytosine; Acetylation; Animals; Cell Differentiation; Cell Lineage; Cells, Cultured; Chromatin Assembly and Disassembly; Cytosine; Dioxygenases; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Regulation, Developmental; Genotype; Histones; Homeodomain Proteins; Humans; Induced Pluripotent Stem Cells; Mice, 129 Strain; Mice, Inbred C57BL; Mice, Knockout; Mice, SCID; Nanog Homeobox Protein; Neurogenesis; Octamer Transcription Factor-3; Phenotype; Proto-Oncogene Proteins; RNA Interference; Signal Transduction; Sirtuins; SOXB1 Transcription Factors; Teratoma; Transfection

2015
Hydroxymethylcytosine and demethylation of the γ-globin gene promoter during erythroid differentiation.
    Epigenetics, 2015, Volume: 10, Issue:5

    Topics: 5-Methylcytosine; Animals; Animals, Newborn; Antineoplastic Agents; Ascorbic Acid; Azacitidine; Bone Marrow Cells; Cell Differentiation; Cells, Cultured; Cytosine; Decitabine; Dioxygenases; DNA Methylation; Erythroid Cells; gamma-Globins; Histone Demethylases; Humans; Hydroxyurea; Liver; Papio anubis; Promoter Regions, Genetic; Tranylcypromine

2015
Short-term memory of danger signals or environmental stimuli in mesenchymal stem cells: implications for therapeutic potential.
    Cellular & molecular immunology, 2016, Volume: 13, Issue:3

    Topics: 5-Methylcytosine; Adipose Tissue; Animals; Cell Differentiation; Cell Proliferation; Cell Shape; Chemokine CCL2; Diabetes Mellitus, Experimental; DNA Methylation; Enzyme-Linked Immunosorbent Assay; Immunologic Memory; Immunophenotyping; Interleukin-6; Interleukin-8; Lipopolysaccharides; Male; Mesenchymal Stem Cell Transplantation; Mesenchymal Stem Cells; MicroRNAs; Rats, Wistar; Real-Time Polymerase Chain Reaction; Signal Transduction; Surgical Flaps; Tissue Survival; Tumor Necrosis Factor-alpha

2016
Effects of particulate matter exposure on blood 5-hydroxymethylation: results from the Beijing truck driver air pollution study.
    Epigenetics, 2015, Volume: 10, Issue:7

    Topics: 5-Methylcytosine; Adolescent; Adult; Air Pollution; Beijing; Cytosine; Environmental Exposure; Female; Humans; Male; Middle Aged; Particulate Matter; Young Adult

2015
Dynamic changes of DNA epigenetic marks in mouse oocytes during natural and accelerated aging.
    The international journal of biochemistry & cell biology, 2015, Volume: 67

    Topics: 5-Methylcytosine; Aging; Animals; Cellular Senescence; Cyclohexenes; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Female; Histones; Injections, Intraperitoneal; Mice; Mice, Inbred C57BL; Oocytes; Ovary; Protein Isoforms; Proto-Oncogene Proteins; Thymine DNA Glycosylase; Vinyl Compounds

2015
Direct conjugation of peptides and 5-hydroxymethylcytosine in DNA.
    Bioconjugate chemistry, 2015, Jun-17, Volume: 26, Issue:6

    Topics: 5-Methylcytosine; Amino Acid Sequence; Cytosine; DNA; DNA-Cytosine Methylases; Models, Molecular; Peptides; Spiroplasma

2015
Oxygen concentration controls epigenetic effects in models of familial paraganglioma.
    PloS one, 2015, Volume: 10, Issue:5

    Topics: 5-Methylcytosine; Animals; Case-Control Studies; Cytosine; Dioxygenases; DNA Methylation; Epigenesis, Genetic; Fibroblasts; Gene Knockdown Techniques; HEK293 Cells; Histones; Humans; Hypoxia-Inducible Factor 1, alpha Subunit; Ketoglutaric Acids; Mice, Inbred C57BL; Models, Biological; Oxygen; Paraganglioma; Succinate Dehydrogenase; Succinic Acid

2015
Structure-guided sequence specificity engineering of the modification-dependent restriction endonuclease LpnPI.
    Nucleic acids research, 2015, Jul-13, Volume: 43, Issue:12

    Topics: 5-Methylcytosine; Base Sequence; Cytosine; DNA; DNA Restriction Enzymes; DNA-Binding Proteins; Models, Molecular; Protein Binding; Protein Engineering; Protein Structure, Tertiary

2015
Loss of 5-hydroxymethylcytosine and intratumoral heterogeneity as an epigenomic hallmark of glioblastoma.
    Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine, 2015, Volume: 36, Issue:11

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Cytosine; DNA Methylation; DNA Modification Methylases; DNA Repair Enzymes; Epigenesis, Genetic; Female; Glioblastoma; Histones; Humans; Isocitrate Dehydrogenase; Ki-67 Antigen; Loss of Heterozygosity; Male; Middle Aged; Mutation; Prognosis; Promoter Regions, Genetic; Tumor Suppressor Proteins

2015
Lead exposure induces changes in 5-hydroxymethylcytosine clusters in CpG islands in human embryonic stem cells and umbilical cord blood.
    Epigenetics, 2015, Volume: 10, Issue:7

    Topics: 5-Methylcytosine; Cell Line; CpG Islands; Cytosine; DNA Methylation; Environmental Exposure; Fetal Blood; Human Embryonic Stem Cells; Humans; Lead; Mexico; Sequence Analysis, DNA; Sex Factors; Umbilical Cord

2015
Cell Fate by SIRT6 and TETs.
    Cell cycle (Georgetown, Tex.), 2015, Volume: 14, Issue:14

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cytosine; Dioxygenases; DNA-Binding Proteins; Embryonic Stem Cells; Humans; Mixed Function Oxygenases; Proto-Oncogene Proteins; Sirtuins; Transcription Factors

2015
Placental 5-methylcytosine and 5-hydroxymethylcytosine patterns associate with size at birth.
    Epigenetics, 2015, Volume: 10, Issue:8

    Topics: 5-Methylcytosine; Birth Weight; Cyclin-Dependent Kinase Inhibitor p57; Cytosine; DNA Methylation; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; Genomic Imprinting; Humans; Insulin-Like Growth Factor II; Placenta; Pregnancy

2015
TET family proteins and 5-hydroxymethylcytosine in esophageal squamous cell carcinoma.
    Oncotarget, 2015, Sep-15, Volume: 6, Issue:27

    Topics: 5-Methylcytosine; Aged; Carcinoma, Squamous Cell; Case-Control Studies; Cell Survival; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Enzyme-Linked Immunosorbent Assay; Epigenesis, Genetic; Esophageal Neoplasms; Esophageal Squamous Cell Carcinoma; Female; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; Genetic Markers; Humans; Immunohistochemistry; Intestinal Mucosa; Kaplan-Meier Estimate; Long Interspersed Nucleotide Elements; Male; Middle Aged; Prognosis; Proto-Oncogene Proteins; RNA, Messenger; Sequence Analysis, DNA

2015
5-Formylcytosine can be a stable DNA modification in mammals.
    Nature chemical biology, 2015, Volume: 11, Issue:8

    Topics: 5-Methylcytosine; Aging; Animals; Animals, Newborn; Brain; Cytosine; DNA; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; Gene Expression Regulation, Developmental; Half-Life; Liver; Mice; Mice, Inbred C57BL; Myocardium

2015
Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex.
    Nature, 2015, Jul-30, Volume: 523, Issue:7562

    Topics: 5-Methylcytosine; Crystallography, X-Ray; Cytosine; DNA Methylation; DNA Repair; Epigenesis, Genetic; Hydrogen Bonding; Kinetics; RNA Polymerase II; Saccharomyces cerevisiae; Substrate Specificity; Templates, Genetic; Thymine DNA Glycosylase; Transcription Elongation, Genetic

2015
5-Hydroxymethylcytosine Profiling in Human DNA.
    Methods in molecular biology (Clifton, N.J.), 2017, Volume: 1589

    Topics: 5-Methylcytosine; DNA; DNA Fingerprinting; Epigenomics; Genome, Human; Humans; Immunoprecipitation; Sequence Analysis, DNA

2017
MicroRNA-29b/Tet1 regulatory axis epigenetically modulates mesendoderm differentiation in mouse embryonic stem cells.
    Nucleic acids research, 2015, Sep-18, Volume: 43, Issue:16

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cells, Cultured; Cytosine; Dioxygenases; DNA-Binding Proteins; Ectoderm; Embryoid Bodies; Endoderm; Epigenesis, Genetic; HEK293 Cells; Humans; Left-Right Determination Factors; Mesoderm; Mice; MicroRNAs; Mouse Embryonic Stem Cells; Proto-Oncogene Proteins; Thymine DNA Glycosylase

2015
5mC-hydroxylase activity is influenced by the PARylation of TET1 enzyme.
    Oncotarget, 2015, Sep-15, Volume: 6, Issue:27

    Topics: 5-Methylcytosine; Amino Acid Sequence; Catalytic Domain; Cytosine; DNA Damage; DNA Methylation; Enzyme-Linked Immunosorbent Assay; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Glutathione Transferase; HEK293 Cells; Humans; Immunoprecipitation; Mixed Function Oxygenases; Molecular Sequence Data; Poly (ADP-Ribose) Polymerase-1; Poly(ADP-ribose) Polymerases; Protein Processing, Post-Translational; Proto-Oncogene Proteins; Recombinant Proteins; Sequence Homology, Amino Acid

2015
Age-dependent levels of 5-methyl-, 5-hydroxymethyl-, and 5-formylcytosine in human and mouse brain tissues.
    Angewandte Chemie (International ed. in English), 2015, Oct-12, Volume: 54, Issue:42

    Topics: 5-Methylcytosine; Adolescent; Adult; Age Factors; Aged; Aged, 80 and over; Animals; Brain; Child; Child, Preschool; Cytosine; Humans; Infant; Mice; Middle Aged; Young Adult

2015
A Cell Electrofusion Chip for Somatic Cells Reprogramming.
    PloS one, 2015, Volume: 10, Issue:7

    Topics: 5-Methylcytosine; Animals; Cellular Reprogramming; Cytosine; DNA; DNA Methylation; Electroporation; Homeodomain Proteins; Karyotyping; Mice; Mice, Nude; Microfluidic Analytical Techniques; Mouse Embryonic Stem Cells; Nanog Homeobox Protein; NIH 3T3 Cells; Octamer Transcription Factor-3; Real-Time Polymerase Chain Reaction

2015
Altering TET dioxygenase levels within physiological range affects DNA methylation dynamics of HEK293 cells.
    Epigenetics, 2015, Volume: 10, Issue:9

    Topics: 5-Methylcytosine; CpG Islands; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Gene Knockdown Techniques; HEK293 Cells; Humans; Mixed Function Oxygenases; Promoter Regions, Genetic; Proto-Oncogene Proteins; Up-Regulation

2015
The dynamics of DNA methylation and hydroxymethylation during amelogenesis.
    Histochemistry and cell biology, 2015, Volume: 144, Issue:5

    Topics: 5-Methylcytosine; Amelogenesis; Animals; Cytosine; DNA Methylation; Incisor; Mandible; Mice; Mice, Inbred ICR

2015
Genome-Wide Mapping of 5mC and 5hmC Identified Differentially Modified Genomic Regions in Late-Onset Severe Preeclampsia: A Pilot Study.
    PloS one, 2015, Volume: 10, Issue:7

    Topics: 5-Methylcytosine; Adult; Cytosine; DNA Methylation; Epigenesis, Genetic; ErbB Receptors; Female; Genome-Wide Association Study; Genome, Human; Humans; Pilot Projects; Pre-Eclampsia; Pregnancy; Receptor-Like Protein Tyrosine Phosphatases, Class 8; Signal Transduction

2015
Altering 5-hydroxymethylcytosine modification impacts ischemic brain injury.
    Human molecular genetics, 2015, Oct-15, Volume: 24, Issue:20

    Topics: 5-Methylcytosine; Animals; Brain Ischemia; Brain-Derived Neurotrophic Factor; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Male; Mice; Promoter Regions, Genetic; Proto-Oncogene Proteins; Reperfusion Injury

2015
Diagnostic utility of 5-hydroxymethylcytosine immunohistochemistry in melanocytic proliferations.
    Journal of cutaneous pathology, 2015, Volume: 42, Issue:11

    Topics: 5-Methylcytosine; Cytosine; Diagnosis, Differential; Humans; Immunohistochemistry; Lymph Nodes; Lymphatic Metastasis; Melanocytes; Melanoma; Nevus, Pigmented; Skin Neoplasms; Tissue Array Analysis

2015
Reduction of global 5-hydroxymethylcytosine is a poor prognostic factor in breast cancer patients, especially for an ER/PR-negative subtype.
    Breast cancer research and treatment, 2015, Volume: 153, Issue:1

    Topics: 5-Methylcytosine; Adult; Aged; Breast Neoplasms; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Female; Gene Expression; Humans; Immunohistochemistry; Middle Aged; Mixed Function Oxygenases; Neoplasm Grading; Neoplasm Staging; Prognosis; Protein Transport; Proto-Oncogene Proteins; Receptors, Estrogen; Receptors, Progesterone; Risk Factors; Survival Analysis; Young Adult

2015
Increased DNA methylation in the livers of patients with alcoholic hepatitis.
    Experimental and molecular pathology, 2015, Volume: 99, Issue:2

    Topics: 5-Methylcytosine; Biomarkers; Cytosine; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation; Hepatitis, Alcoholic; Hepatocytes; Humans; Immunoenzyme Techniques; Liver

2015
Genome-wide mapping of 5-hydroxymethylcytosine in three rice cultivars reveals its preferential localization in transcriptionally silent transposable element genes.
    Journal of experimental botany, 2015, Volume: 66, Issue:21

    Topics: 5-Methylcytosine; Chromatography, Liquid; Chromosome Mapping; Cytosine; DNA Transposable Elements; DNA, Plant; Epigenesis, Genetic; High-Throughput Nucleotide Sequencing; Oryza; Sequence Analysis, DNA; Tandem Mass Spectrometry

2015
TET2 expression level and 5-hydroxymethylcytosine are decreased in refractory cytopenia of childhood.
    Leukemia research, 2015, Volume: 39, Issue:10

    Topics: 5-Methylcytosine; Adolescent; Case-Control Studies; Child; Child, Preschool; Cytosine; Dioxygenases; DNA Mutational Analysis; DNA-Binding Proteins; Female; Gene Expression Regulation; High-Throughput Nucleotide Sequencing; Humans; Infant; Male; MicroRNAs; Mutation; Myelodysplastic Syndromes; Polymerase Chain Reaction; Proto-Oncogene Proteins; Transcriptome

2015
A novel electrochemical immunosensor for the quantitative detection of 5-hydroxymethylcytosine in genomic DNA of breast cancer tissue.
    Chemical communications (Cambridge, England), 2015, Oct-07, Volume: 51, Issue:78

    Topics: 5-Methylcytosine; Biosensing Techniques; Breast Neoplasms; Cytosine; DNA, Neoplasm; Female; Humans

2015
Hypoxia Drives Breast Tumor Malignancy through a TET-TNFα-p38-MAPK Signaling Axis.
    Cancer research, 2015, Sep-15, Volume: 75, Issue:18

    Topics: 5-Methylcytosine; Animals; Breast Neoplasms; Cell Hypoxia; Cell Line, Tumor; Chromatin Immunoprecipitation; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Female; Gene Expression Regulation, Neoplastic; Heterografts; Humans; Hypoxia-Inducible Factor 1, alpha Subunit; Mice; Mice, Nude; Mixed Function Oxygenases; Molecular Sequence Data; Neoplasm Proteins; Neoplastic Stem Cells; p38 Mitogen-Activated Protein Kinases; Prognosis; Promoter Regions, Genetic; Proto-Oncogene Proteins; Recombinant Fusion Proteins; Retrospective Studies; Signal Transduction; Tumor Necrosis Factor-alpha

2015
Epigenetic regulation of human adipose-derived stem cells differentiation.
    Molecular and cellular biochemistry, 2015, Volume: 410, Issue:1-2

    Topics: 5-Methylcytosine; Adipose Tissue; Adult Stem Cells; Cell Differentiation; Cell Line; Cell Lineage; Cytosine; Epigenesis, Genetic; Gene Expression Profiling; Gene Expression Regulation, Developmental; Homeodomain Proteins; Humans; Mixed Function Oxygenases; Nanog Homeobox Protein; Octamer Transcription Factor-3; Oligonucleotide Array Sequence Analysis; Osteoblasts; Osteogenesis; Phenotype; Pluripotent Stem Cells; Proto-Oncogene Proteins; Real-Time Polymerase Chain Reaction; SOXB1 Transcription Factors

2015
Structure of Naegleria Tet-like dioxygenase (NgTet1) in complexes with a reaction intermediate 5-hydroxymethylcytosine DNA.
    Nucleic acids research, 2015, Dec-15, Volume: 43, Issue:22

    Topics: 5-Methylcytosine; Amino Acid Substitution; Catalytic Domain; Cytosine; Dioxygenases; DNA; Models, Molecular; Naegleria; Thymine

2015
Charting oxidized methylcytosines at base resolution.
    Nature structural & molecular biology, 2015, Volume: 22, Issue:9

    Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA; Epigenesis, Genetic; Gene Expression Regulation; Humans; Mammals; Oxidation-Reduction

2015
Characterizing 5-hydroxymethylcytosine in human prefrontal cortex at single base resolution.
    BMC genomics, 2015, Sep-03, Volume: 16

    Topics: 5-Methylcytosine; Adult; Base Pairing; Binding Sites; Chromosomes, Human; Cluster Analysis; Cytosine; Epigenesis, Genetic; Exons; Female; Gene Ontology; Genome, Human; Humans; Introns; Male; Prefrontal Cortex; Protein Processing, Post-Translational; Sequence Analysis, DNA; Sex Characteristics; X Chromosome Inactivation

2015
Bisulfite-free, base-resolution analysis of 5-formylcytosine at the genome scale.
    Nature methods, 2015, Volume: 12, Issue:11

    Topics: 5-Methylcytosine; Animals; Cell Line; CpG Islands; Cytosine; DNA Methylation; DNA Primers; Epigenomics; Gene Expression Regulation; Genome; Mice; Mice, Transgenic; Oligonucleotides; Oxygen; Polymerase Chain Reaction; Sequence Analysis, DNA; Stem Cells; Sulfites

2015
A Strategy for Accurate Quantification of 5-Methylcytosine and 5-Hydroxymethylcytosine at CpG Sites Within Gene Promoter.
    Journal of biomedical nanotechnology, 2015, Volume: 11, Issue:6

    Topics: 5-Methylcytosine; CpG Islands; Cytosine; DNA Methylation; Female; Humans; Oxidation-Reduction; Promoter Regions, Genetic; Reproducibility of Results; Sequence Analysis, DNA; Tumor Cells, Cultured

2015
Arsenite Targets the Zinc Finger Domains of Tet Proteins and Inhibits Tet-Mediated Oxidation of 5-Methylcytosine.
    Environmental science & technology, 2015, Oct-06, Volume: 49, Issue:19

    Topics: 5-Methylcytosine; Animals; Arsenites; Chromatography, Liquid; Cytosine; DNA; DNA-Binding Proteins; HEK293 Cells; Humans; Hydroxylation; Mice; Mouse Embryonic Stem Cells; Oxidation-Reduction; Spectrometry, Mass, Electrospray Ionization; Zinc Fingers

2015
Epigenetic Modifications in the Biology of Nonalcoholic Fatty Liver Disease: The Role of DNA Hydroxymethylation and TET Proteins.
    Medicine, 2015, Volume: 94, Issue:36

    Topics: 5-Methylcytosine; Adult; Cytosine; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Female; Genetic Predisposition to Disease; Heat-Shock Proteins; Humans; Liver; Male; Middle Aged; Mitochondria, Liver; Mixed Function Oxygenases; Non-alcoholic Fatty Liver Disease; Organelle Biogenesis; Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha; Proto-Oncogene Proteins; Transcription Factors

2015
Stable 5-Hydroxymethylcytosine (5hmC) Acquisition Marks Gene Activation During Chondrogenic Differentiation.
    Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research, 2016, Volume: 31, Issue:3

    Topics: 5-Methylcytosine; Animals; Cartilage; Cell Differentiation; Chondrocytes; Chondrogenesis; Cytosine; DNA-Binding Proteins; DNA, Intergenic; Embryonic Development; Extremities; Gene Expression Regulation, Developmental; Mice; Proto-Oncogene Proteins; Stem Cells; Transcriptional Activation

2016
Sex-specific associations of arsenic exposure with global DNA methylation and hydroxymethylation in leukocytes: results from two studies in Bangladesh.
    Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, 2015, Volume: 24, Issue:11

    Topics: 5-Methylcytosine; Adult; Aged; Arsenic; Bangladesh; Cytosine; DNA Methylation; Drinking Water; Environmental Exposure; Female; Homocysteine; Humans; Leukocytes; Male; Middle Aged; Sex Factors; Young Adult

2015
Bacterial infection remodels the DNA methylation landscape of human dendritic cells.
    Genome research, 2015, Volume: 25, Issue:12

    Topics: 5-Methylcytosine; Bacterial Infections; CpG Islands; Cytosine; Dendritic Cells; DNA Methylation; Epigenesis, Genetic; Epigenomics; Gene Expression Regulation; Host-Pathogen Interactions; Humans; Mycobacterium tuberculosis; Transcription Factors; Tuberculosis

2015
Diagnosis of abnormal human fertilization status based on pronuclear origin and/or centrosome number.
    Journal of assisted reproduction and genetics, 2015, Volume: 32, Issue:11

    Topics: 5-Methylcytosine; Aneuploidy; Case-Control Studies; Cell Nucleus; Centrosome; Cytosine; DNA Methylation; Epigenesis, Genetic; Female; Fertilization in Vitro; Fluorescent Antibody Technique; Genetic Techniques; Humans; Male; Sperm Injections, Intracytoplasmic; Spermatozoa; Zygote

2015
TET2 repression by androgen hormone regulates global hydroxymethylation status and prostate cancer progression.
    Nature communications, 2015, Sep-25, Volume: 6

    Topics: 5-Methylcytosine; Aged; Androgens; Animals; Blotting, Western; Cell Line, Tumor; Cell Proliferation; Chromatin Immunoprecipitation; Cytosine; Dioxygenases; Disease Progression; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; HEK293 Cells; Hepatocyte Nuclear Factor 3-alpha; Humans; Hydroxylation; Immunohistochemistry; Male; Mice, Inbred BALB C; MicroRNAs; Middle Aged; Neoplasm Transplantation; Prostatic Neoplasms; Proto-Oncogene Proteins; Receptors, Androgen; Reverse Transcriptase Polymerase Chain Reaction; RNA, Messenger; Sequence Analysis, RNA; TOR Serine-Threonine Kinases

2015
Water-bridged hydrogen bond formation between 5-hydroxylmethylcytosine (5-hmC) and its 3'-neighbouring bases in A- and B-form DNA duplexes.
    Chemical communications (Cambridge, England), 2015, Nov-25, Volume: 51, Issue:91

    Topics: 5-Methylcytosine; Base Pairing; Crystallography, X-Ray; Cytosine; DNA, A-Form; DNA, B-Form; Hydrogen Bonding; Molecular Dynamics Simulation; Water

2015
DNA 5-hydroxymethylation in human adipose tissue differs between subcutaneous and visceral adipose tissue depots.
    Epigenomics, 2015, Volume: 7, Issue:6

    Topics: 5-Methylcytosine; Adipocytes; Adiposity; Aged; Biomarkers; Cell Size; Cytosine; DNA Methylation; Female; Humans; Intra-Abdominal Fat; Male; Middle Aged; Sex Factors; Subcutaneous Fat; Tomography, X-Ray Computed

2015
Genome-wide disruption of 5-hydroxymethylcytosine in a mouse model of autism.
    Human molecular genetics, 2015, Dec-15, Volume: 24, Issue:24

    Topics: 5-Methylcytosine; Animals; Autistic Disorder; Corpus Striatum; Cytosine; Disease Models, Animal; DNA; DNA Methylation; Epigenesis, Genetic; Male; Membrane Proteins; Mice; Mice, Inbred C57BL; Mice, Knockout; Molecular Sequence Annotation; Nerve Tissue Proteins; Reelin Protein

2015
Loss of the epigenetic mark, 5-Hydroxymethylcytosine, correlates with small cell/nevoid subpopulations and assists in microstaging of human melanoma.
    Oncotarget, 2015, Nov-10, Volume: 6, Issue:35

    Topics: 5-Methylcytosine; Adolescent; Adult; Aged; Aged, 80 and over; Biomarkers, Tumor; Carcinoma, Small Cell; Cytosine; Epigenomics; Female; Follow-Up Studies; Gene Expression Regulation, Neoplastic; Humans; Immunoenzyme Techniques; Male; Melanoma; Melanoma, Cutaneous Malignant; Middle Aged; Neoplasm Staging; Nevus, Pigmented; Prognosis; Skin Neoplasms; Young Adult

2015
Decrease of 5hmC in gastric cancers is associated with TET1 silencing due to with DNA methylation and bivalent histone marks at TET1 CpG island 3'-shore.
    Oncotarget, 2015, Nov-10, Volume: 6, Issue:35

    Topics: 3' Untranslated Regions; 5-Methylcytosine; Chromatin Immunoprecipitation; CpG Islands; Cytosine; DNA Methylation; Female; Gene Silencing; Histone Code; Humans; Immunoenzyme Techniques; Male; Middle Aged; Mixed Function Oxygenases; Proto-Oncogene Proteins; Real-Time Polymerase Chain Reaction; Reverse Transcriptase Polymerase Chain Reaction; RNA, Messenger; Signal Transduction; Stomach Neoplasms; Tumor Cells, Cultured

2015
Inactivation of SDH and FH cause loss of 5hmC and increased H3K9me3 in paraganglioma/pheochromocytoma and smooth muscle tumors.
    Oncotarget, 2015, Nov-17, Volume: 6, Issue:36

    Topics: 5-Methylcytosine; Adrenal Gland Neoplasms; Cell Nucleus; Cytosine; Fumarate Hydratase; Gene Silencing; HEK293 Cells; Histone-Lysine N-Methyltransferase; Humans; Immunohistochemistry; Mixed Function Oxygenases; Paraganglioma; Pheochromocytoma; Proto-Oncogene Proteins; Smooth Muscle Tumor; Succinate Dehydrogenase

2015
Epigenetic modifications in mouse cerebellar Purkinje cells: effects of aging, caloric restriction, and overexpression of superoxide dismutase 1 on 5-methylcytosine and 5-hydroxymethylcytosine.
    Neurobiology of aging, 2015, Volume: 36, Issue:11

    Topics: 5-Methylcytosine; Aging; Animals; Caloric Restriction; Cytosine; DNA Methylation; Epigenesis, Genetic; Gene Expression; Immunohistochemistry; Mice, Inbred C57BL; Purkinje Cells; Superoxide Dismutase; Superoxide Dismutase-1

2015
Profiling of methylation and demethylation pathways during brain development and ageing.
    Journal of neural transmission (Vienna, Austria : 1996), 2016, Volume: 123, Issue:3

    Topics: 5-Methylcytosine; Aging; Animals; Brain; Cytosine; DNA Methylation; Epigenesis, Genetic; Female; Immunohistochemistry; Male; Mice; Mice, Inbred C57BL; Polymerase Chain Reaction; Transcriptome

2016
Alteration in 5-hydroxymethylcytosine-mediated epigenetic regulation leads to Purkinje cell vulnerability in ATM deficiency.
    Brain : a journal of neurology, 2015, Volume: 138, Issue:Pt 12

    Topics: 5-Methylcytosine; Animals; Ataxia Telangiectasia; Ataxia Telangiectasia Mutated Proteins; Behavior, Animal; Cells, Cultured; Cerebellum; Cytosine; DNA Damage; DNA-Binding Proteins; Epigenesis, Genetic; Humans; Mice; Mice, Knockout; Proto-Oncogene Proteins; Purkinje Cells

2015
Structural insight into substrate preference for TET-mediated oxidation.
    Nature, 2015, Nov-05, Volume: 527, Issue:7576

    Topics: 5-Methylcytosine; Biocatalysis; Catalytic Domain; Crystallography, X-Ray; Cytosine; Dioxygenases; DNA; DNA Methylation; DNA-Binding Proteins; Humans; Hydrogen Bonding; Mixed Function Oxygenases; Models, Molecular; Oxidation-Reduction; Protein Binding; Proto-Oncogene Proteins; Substrate Specificity

2015
MECP2 Is a Frequently Amplified Oncogene with a Novel Epigenetic Mechanism That Mimics the Role of Activated RAS in Malignancy.
    Cancer discovery, 2016, Volume: 6, Issue:1

    Topics: 5-Methylcytosine; Alternative Splicing; Animals; Cell Line, Tumor; Cytosine; Epigenesis, Genetic; Gene Amplification; Humans; Methyl-CpG-Binding Protein 2; Mice; Neoplasm Transplantation; Neoplasms; Protein Isoforms; ras Proteins; Signal Transduction

2016
The existence of 5-hydroxymethylcytosine and 5-formylcytosine in both DNA and RNA in mammals.
    Chemical communications (Cambridge, England), 2016, Jan-14, Volume: 52, Issue:4

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; DNA Methylation; Mammals; Mass Spectrometry; Oxidation-Reduction; RNA

2016
Single Site Discrimination of Cytosine, 5-Methylcytosine, and 5-Hydroxymethylcytosine in Target DNA Using Anthracene-Tagged Fluorescent Probes.
    ACS chemical biology, 2016, Mar-18, Volume: 11, Issue:3

    Topics: 5-Methylcytosine; Anthracenes; Cytosine; DNA; Fluorescent Dyes; Nucleic Acid Conformation

2016
Selective oxidation of 5-hydroxymethylcytosine with micelle incarcerated oxidants to determine it at single base resolution.
    Bioorganic & medicinal chemistry letters, 2015, Dec-15, Volume: 25, Issue:24

    Topics: 5-Methylcytosine; Base Sequence; Catalysis; Cytosine; Mass Spectrometry; Micelles; Oxidation-Reduction; Sulfites

2015
Genome-wide alterations in hippocampal 5-hydroxymethylcytosine links plasticity genes to acute stress.
    Neurobiology of disease, 2016, Volume: 86

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Epigenesis, Genetic; Gene Expression; Hippocampus; Male; Mice; Mice, Inbred C57BL; Neuronal Plasticity; Stress, Psychological

2016
TET-catalyzed 5-hydroxymethylcytosine regulates gene expression in differentiating colonocytes and colon cancer.
    Scientific reports, 2015, Dec-03, Volume: 5

    Topics: 5-Methylcytosine; Adenocarcinoma; Binding Sites; Cell Differentiation; Cell Line, Tumor; Colon; Colonic Neoplasms; Cytosine; Gene Expression Regulation; Gene Expression Regulation, Neoplastic; Humans; Mixed Function Oxygenases; Proto-Oncogene Proteins; Transcription Factors

2015
Tissue-Specific Differences in DNA Modifications (5-Hydroxymethylcytosine, 5-Formylcytosine, 5-Carboxylcytosine and 5-Hydroxymethyluracil) and Their Interrelationships.
    PloS one, 2015, Volume: 10, Issue:12

    Topics: 5-Methylcytosine; Animals; Brain Chemistry; Chromatography, High Pressure Liquid; Cytosine; Dioxygenases; DNA; DNA Methylation; Epigenesis, Genetic; Gene Expression; Kidney; Liver; Lung; Male; Myocardium; Organ Specificity; Pentoxyl; Rats; Rats, Wistar; Swine; Tandem Mass Spectrometry; Thymus Gland

2015
Loss of 5-hydroxymethylcytosine is linked to gene body hypermethylation in kidney cancer.
    Cell research, 2016, Volume: 26, Issue:1

    Topics: 5-Methylcytosine; Animals; Carcinoma, Renal Cell; Cell Line, Tumor; Cytosine; DNA Methylation; Down-Regulation; Female; Gene Expression Regulation, Neoplastic; Humans; Isocitrate Dehydrogenase; Kidney; Kidney Neoplasms; Male; Mice, Inbred BALB C; Mice, Nude

2016
Ten-eleven translocation 1 (TET1) methylation is associated with childhood asthma and traffic-related air pollution.
    The Journal of allergy and clinical immunology, 2016, Volume: 137, Issue:3

    Topics: 5-Methylcytosine; Adolescent; Air Pollution; Alleles; Asthma; Case-Control Studies; Child; CpG Islands; Cytosine; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Epithelial Cells; Female; Gene Expression; Humans; Male; Mixed Function Oxygenases; Nasal Mucosa; Promoter Regions, Genetic; Proto-Oncogene Proteins; Risk Factors; RNA, Messenger; Vehicle Emissions

2016
5-Hydroxymethylcytosine as a putative marker for erosive adenomatosis of the nipple.
    The Journal of dermatology, 2016, Volume: 43, Issue:5

    Topics: 5-Methylcytosine; Adenoma; Adult; Biomarkers, Tumor; Biopsy, Needle; Breast Neoplasms; Female; Humans; Image-Guided Biopsy; Immunohistochemistry; Magnetic Resonance Imaging; Middle Aged; Nipples

2016
Evaluation of 5-methylcytosine and 5-hydroxymethylcytosine as potential biomarkers for characterisation of chemical allergens.
    Toxicology, 2016, Jan-18, Volume: 340

    Topics: 5-Methylcytosine; Allergens; Animals; Cytosine; Dinitrochlorobenzene; DNA Fragmentation; DNA Methylation; Epigenesis, Genetic; Female; Immunoprecipitation; Local Lymph Node Assay; Lymph Nodes; Mice, Inbred BALB C; Phthalic Anhydrides; Polymerase Chain Reaction; Promoter Regions, Genetic

2016
C9orf72 promoter hypermethylation is reduced while hydroxymethylation is acquired during reprogramming of ALS patient cells.
    Experimental neurology, 2016, Volume: 277

    Topics: 5-Methylcytosine; Amyotrophic Lateral Sclerosis; Brain; C9orf72 Protein; Coculture Techniques; CpG Islands; Cytosine; DNA Methylation; Green Fluorescent Proteins; Homeodomain Proteins; Humans; Induced Pluripotent Stem Cells; Lymphocytes; Motor Neurons; Mutation; Nanog Homeobox Protein; Nestin; Promoter Regions, Genetic; Proteins; RNA, Messenger; SOXB1 Transcription Factors; Time Factors

2016
De novo DNA methylation drives 5hmC accumulation in mouse zygotes.
    Nature cell biology, 2016, Volume: 18, Issue:2

    Topics: 5-Methylcytosine; Animals; Biomarkers; Cellular Reprogramming; Chromatography, Liquid; Cytosine; Dioxygenases; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3A; DNA-Binding Proteins; Embryo Culture Techniques; Epigenesis, Genetic; Fertilization in Vitro; Fluorescent Antibody Technique; Gene Expression Regulation, Developmental; Kinetics; Mass Spectrometry; Mice; Mice, Knockout; Proto-Oncogene Proteins; Zygote

2016
Ultrasensitive determination of 5-methylcytosine and 5-hydroxymethylcytosine in genomic DNA by sheathless interfaced capillary electrophoresis-mass spectrometry.
    Chemical communications (Cambridge, England), 2016, Feb-14, Volume: 52, Issue:13

    Topics: 5-Methylcytosine; Cytosine; DNA; Electrophoresis, Capillary; Genomics; Limit of Detection; Spectrometry, Mass, Electrospray Ionization

2016
Enhanced MAPK signaling drives ETS1-mediated induction of miR-29b leading to downregulation of TET1 and changes in epigenetic modifications in a subset of lung SCC.
    Oncogene, 2016, 08-18, Volume: 35, Issue:33

    Topics: 5-Methylcytosine; Azacitidine; Carcinoma, Squamous Cell; Cell Line, Tumor; Computational Biology; Down-Regulation; Epigenesis, Genetic; Humans; Lung Neoplasms; MAP Kinase Signaling System; MicroRNAs; Mixed Function Oxygenases; Proto-Oncogene Protein c-ets-1; Proto-Oncogene Proteins; Tumor Escape

2016
Global 5-Hydroxymethylcytosine Levels Are Profoundly Reduced in Multiple Genitourinary Malignancies.
    PloS one, 2016, Volume: 11, Issue:1

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Carcinoma, Renal Cell; Cytosine; DNA Methylation; Female; Humans; Kidney Neoplasms; Male; Middle Aged; Urogenital Neoplasms

2016
RNA biochemistry. Transcriptome-wide distribution and function of RNA hydroxymethylcytosine.
    Science (New York, N.Y.), 2016, Jan-15, Volume: 351, Issue:6270

    Topics: 5-Methylcytosine; Animals; Brain; Cell Line; Cytosine; Dioxygenases; Drosophila melanogaster; Methylation; RNA, Messenger; Transcriptome

2016
Epigenomic Co-localization and Co-evolution Reveal a Key Role for 5hmC as a Communication Hub in the Chromatin Network of ESCs.
    Cell reports, 2016, Feb-09, Volume: 14, Issue:5

    Topics: 5-Methylcytosine; Animals; Chromatin; Cytosine; Epigenesis, Genetic; Evolution, Molecular; Mice; Mouse Embryonic Stem Cells; Multiprotein Complexes; Signal Transduction

2016
Mechanistic insights into the recognition of 5-methylcytosine oxidation derivatives by the SUVH5 SRA domain.
    Scientific reports, 2016, Feb-04, Volume: 6

    Topics: 5-Methylcytosine; Base Sequence; Binding Sites; Calorimetry; Crystallography, X-Ray; Cytosine; DNA; Histidine; Methyltransferases; Molecular Dynamics Simulation; Oligopeptides; Oxidation-Reduction; Protein Binding; Protein Structure, Tertiary; Recombinant Fusion Proteins

2016
5-Hydroxymethylcytosine expression is associated with poor survival in cervical squamous cell carcinoma.
    Japanese journal of clinical oncology, 2016, Volume: 46, Issue:5

    Topics: 5-Methylcytosine; Adult; Carcinoma, Squamous Cell; Cervix Uteri; Dioxygenases; Disease-Free Survival; DNA-Binding Proteins; Female; Humans; Immunohistochemistry; Kaplan-Meier Estimate; Middle Aged; Mixed Function Oxygenases; Multivariate Analysis; Prognosis; Proto-Oncogene Proteins; Uterine Cervical Neoplasms

2016
5-Hydroxymethylcytosine Marks Sites of DNA Damage and Promotes Genome Stability.
    Cell reports, 2016, Feb-16, Volume: 14, Issue:6

    Topics: 5-Methylcytosine; Animals; Aphidicolin; Cell Line; CRISPR-Cas Systems; Cytosine; Dioxygenases; DNA Damage; DNA Methylation; DNA Repair; DNA Replication; DNA-Binding Proteins; Epigenesis, Genetic; Genome; Genomic Instability; HeLa Cells; Histones; Human Embryonic Stem Cells; Humans; Mice; Mice, Inbred C57BL; Proto-Oncogene Proteins; Rad51 Recombinase; Tumor Suppressor p53-Binding Protein 1

2016
5-hydroxymethylcytosine loss is associated with poor prognosis for patients with WHO grade II diffuse astrocytomas.
    Scientific reports, 2016, Feb-11, Volume: 6

    Topics: 5-Methylcytosine; Adolescent; Adult; Aged; Antibodies; Astrocytoma; Biomarkers, Tumor; Brain; Central Nervous System Neoplasms; Cytosine; Female; Humans; Immunohistochemistry; Isocitrate Dehydrogenase; Ki-67 Antigen; Male; Middle Aged; Mutation; Neoplasm Grading; Prognosis; Spinal Cord; Survival Analysis

2016
Genome-wide Analysis Identifies Bcl6-Controlled Regulatory Networks during T Follicular Helper Cell Differentiation.
    Cell reports, 2016, Feb-23, Volume: 14, Issue:7

    Topics: 5-Methylcytosine; Animals; B-Lymphocytes; Base Sequence; Cell Differentiation; Cytosine; DNA-Binding Proteins; Gene Expression Profiling; Gene Expression Regulation; Gene Regulatory Networks; Genome-Wide Association Study; Germinal Center; Interleukin-4; Interleukins; Macrophages; Mice; Mice, Transgenic; Molecular Sequence Data; Proto-Oncogene Proteins c-bcl-6; Receptors, Interleukin-7; Signal Transduction; STAT5 Transcription Factor; T-Lymphocytes, Helper-Inducer

2016
Variation in 5-hydroxymethylcytosine across human cortex and cerebellum.
    Genome biology, 2016, Feb-16, Volume: 17

    Topics: 5-Methylcytosine; Cerebellar Cortex; Cerebellum; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Genome, Human; Humans; Sequence Analysis, DNA; Sulfites

2016
TET1 contributes to neurogenesis onset time during fetal brain development in mice.
    Biochemical and biophysical research communications, 2016, Mar-18, Volume: 471, Issue:4

    Topics: 5-Methylcytosine; Animals; Biomarkers; Brain; Cytosine; DNA-Binding Proteins; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; Genetic Vectors; Mice, Inbred C57BL; Mice, Transgenic; Neurogenesis; Neurons; Proto-Oncogene Proteins; Real-Time Polymerase Chain Reaction

2016
Effects of cytosine modifications on DNA flexibility and nucleosome mechanical stability.
    Nature communications, 2016, Feb-24, Volume: 7

    Topics: 5-Methylcytosine; Biomechanical Phenomena; Cytosine; DNA; DNA Methylation; Molecular Dynamics Simulation; Nucleosomes; Oxidation-Reduction

2016
Methylation profiling by bisulfite sequencing analysis of the mtDNA Non-Coding Region in replicative and senescent Endothelial Cells.
    Mitochondrion, 2016, Volume: 27

    Topics: 5-Methylcytosine; Cytosine; DNA, Intergenic; DNA, Mitochondrial; Endothelial Cells; Humans; Mitochondria; Sequence Analysis, DNA; Sulfites

2016
Ten-Eleven Translocation Genes are Downregulated in Endometriosis.
    Current molecular medicine, 2016, Volume: 16, Issue:3

    Topics: 5-Methylcytosine; Adult; Aged; Case-Control Studies; Cytosine; Dioxygenases; DNA-Binding Proteins; Endometriosis; Endometrium; Epigenesis, Genetic; Female; Fibroblasts; Humans; Hysterectomy; Menstrual Cycle; Middle Aged; Mixed Function Oxygenases; Primary Cell Culture; Proto-Oncogene Proteins; Signal Transduction; Stromal Cells

2016
[Expression and clinical significance of 5hmC in bladder urothelial carcinoma].
    Xi bao yu fen zi mian yi xue za zhi = Chinese journal of cellular and molecular immunology, 2016, Volume: 32, Issue:2

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Biomarkers, Tumor; Carcinoma, Transitional Cell; Cytosine; Female; Humans; Immunohistochemistry; Kaplan-Meier Estimate; Male; Middle Aged; Neoplasm Staging; Prognosis; Urinary Bladder Neoplasms

2016
Hydroxymethylation of microRNA-365-3p Regulates Nociceptive Behaviors via Kcnh2.
    The Journal of neuroscience : the official journal of the Society for Neuroscience, 2016, Mar-02, Volume: 36, Issue:9

    Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; Disease Models, Animal; DNA Methylation; DNA-Binding Proteins; Down-Regulation; Epigenesis, Genetic; Formaldehyde; Gene Expression Regulation; HEK293 Cells; Humans; Male; Mice; Mice, Inbred Strains; MicroRNAs; Pain; Phosphopyruvate Hydratase; Promoter Regions, Genetic; Proto-Oncogene Proteins; Spinal Cord; Time Factors

2016
Analysis of Ferrous on Ten-Eleven Translocation Activity and Epigenetic Modifications of Early Mouse Embryos by Fluorescence Microscopy.
    Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada, 2016, Volume: 22, Issue:2

    Topics: 5-Methylcytosine; Animals; Blastocyst; Cytosine; Dioxygenases; DNA-Binding Proteins; Embryo, Mammalian; Epigenesis, Genetic; Ferrous Compounds; Mice; Microscopy, Fluorescence; Octamer Transcription Factor-3; Proto-Oncogene Proteins

2016
5-Hydroxymethylcytosine discriminates between parathyroid adenoma and carcinoma.
    Clinical epigenetics, 2016, Volume: 8

    Topics: 5-Methylcytosine; Adenoma; Adolescent; Adult; Aged; Blotting, Western; Case-Control Studies; Cytosine; DNA-Binding Proteins; Humans; Middle Aged; Mixed Function Oxygenases; Parathyroid Glands; Parathyroid Neoplasms; Proto-Oncogene Proteins; Real-Time Polymerase Chain Reaction; Young Adult

2016
Increased 5-hydroxymethylcytosine in CD4(+) T cells in systemic lupus erythematosus.
    Journal of autoimmunity, 2016, Volume: 69

    Topics: 5-Methylcytosine; Adult; Autoimmunity; Case-Control Studies; CD4-Positive T-Lymphocytes; Chromatin Immunoprecipitation; Cytosine; DNA Methylation; Epigenesis, Genetic; Female; Gene Expression; Gene Expression Regulation; High-Throughput Nucleotide Sequencing; Humans; Lupus Erythematosus, Systemic; Male; Promoter Regions, Genetic; Protein Binding; Receptors, Interleukin-15; Receptors, Steroid; Repressor Proteins; RNA, Messenger; Severity of Illness Index; Suppressor of Cytokine Signaling 1 Protein; Young Adult

2016
5-Hydroxymethylcytosine-mediated alteration of transposon activity associated with the exposure to adverse in utero environments in human.
    Human molecular genetics, 2016, 06-01, Volume: 25, Issue:11

    Topics: 5-Methylcytosine; Adult; Ascorbic Acid; Diabetes, Gestational; Dioxygenases; DNA Methylation; DNA Transposable Elements; DNA-Binding Proteins; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; Humans; Pre-Eclampsia; Pregnancy; Proto-Oncogene Proteins

2016
Single-CpG resolution mapping of 5-hydroxymethylcytosine by chemical labeling and exonuclease digestion identifies evolutionarily unconserved CpGs as TET targets.
    Genome biology, 2016, Mar-29, Volume: 17

    Topics: 5-Methylcytosine; Animals; Cells, Cultured; CpG Islands; Cytosine; DNA; DNA Methylation; Embryonic Stem Cells; Epigenesis, Genetic; Epigenomics; Exonucleases; Mice; Sequence Analysis, DNA; Staining and Labeling

2016
Spontaneous Oligomerization of Nucleotide Alternatives in Aqueous Solutions.
    Origins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life, 2017, Volume: 47, Issue:1

    Topics: 5-Methylcytosine; Evolution, Chemical; Hot Temperature; Origin of Life; Pentoxyl; Polymerization; Water

2017
Simultaneous single-molecule epigenetic imaging of DNA methylation and hydroxymethylation.
    Proceedings of the National Academy of Sciences of the United States of America, 2016, Apr-19, Volume: 113, Issue:16

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Epigenesis, Genetic; Mice; Molecular Imaging

2016
Proton irradiation induces persistent and tissue-specific DNA methylation changes in the left ventricle and hippocampus.
    BMC genomics, 2016, Mar-31, Volume: 17

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Epigenesis, Genetic; Heart Ventricles; Hippocampus; Male; Mice; Mice, Inbred C57BL; Protons

2016
Loss of 5-Hydroxymethylcytosine Is an Independent Unfavorable Prognostic Factor for Esophageal Squamous Cell Carcinoma.
    PloS one, 2016, Volume: 11, Issue:4

    Topics: 5-Methylcytosine; Carcinoma, Squamous Cell; Cytosine; Esophageal Neoplasms; Female; Humans; Male; Middle Aged; Prognosis

2016
TREM2 upregulation correlates with 5-hydroxymethycytosine enrichment in Alzheimer's disease hippocampus.
    Clinical epigenetics, 2016, Volume: 8

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Alzheimer Disease; Cytosine; DNA Methylation; Female; Genome-Wide Association Study; Hippocampus; Humans; Male; Membrane Glycoproteins; Middle Aged; Receptors, Immunologic; Up-Regulation

2016
5-Hydroxymethylation-associated epigenetic modifiers of Alzheimer's disease modulate Tau-induced neurotoxicity.
    Human molecular genetics, 2016, 06-15, Volume: 25, Issue:12

    Topics: 5-Methylcytosine; Aged; Aged, 80 and over; Alzheimer Disease; Animals; Autopsy; Disease Models, Animal; DNA Methylation; Drosophila melanogaster; Epigenesis, Genetic; Female; Gene Expression Regulation; Genome, Human; Humans; Male; Neurogenesis; Neurons; Polymorphism, Single Nucleotide; Prefrontal Cortex; Protein Interaction Mapping; tau Proteins

2016
Genomic distribution of 5-Hydroxymethylcytosine in mouse kidney and its relationship with gene expression.
    Renal failure, 2016, Volume: 38, Issue:6

    Topics: 5-Methylcytosine; Acute Kidney Injury; Animals; DNA Methylation; Epigenesis, Genetic; Gene Expression; Kidney; Male; Mice; Mice, Inbred C57BL; Reperfusion Injury

2016
5-hydroxymethylcytosine is detected in RNA from mouse brain tissues.
    Brain research, 2016, 07-01, Volume: 1642

    Topics: 5-Methylcytosine; Animals; Brain; DNA; Hot Temperature; Immunoblotting; Male; Mice, Inbred ICR; Motor Activity; MPTP Poisoning; Nucleic Acid Denaturation; Random Allocation; RNA; Time Factors

2016
TET1 inhibits gastric cancer growth and metastasis by PTEN demethylation and re-expression.
    Oncotarget, 2016, May-24, Volume: 7, Issue:21

    Topics: 5-Methylcytosine; Animals; Cell Line, Tumor; Cell Movement; Cell Proliferation; CpG Islands; Demethylation; Female; Gene Expression Regulation, Neoplastic; Humans; Male; Mice, Inbred BALB C; Mice, Nude; Middle Aged; Mixed Function Oxygenases; Neoplasm Metastasis; Promoter Regions, Genetic; Protein Binding; Proto-Oncogene Proteins; PTEN Phosphohydrolase; RNA Interference; Stomach Neoplasms; Transplantation, Heterologous

2016
Characterization of preneoplastic and neoplastic rat mesothelial cell lines: the involvement of TETs, DNMTs, and 5-hydroxymethylcytosine.
    Oncotarget, 2016, Jun-07, Volume: 7, Issue:23

    Topics: 5-Methylcytosine; Animals; Asbestos, Crocidolite; Biomarkers, Tumor; Cell Line, Tumor; Cell Movement; Cell Proliferation; Cell Transformation, Neoplastic; Cyclin-Dependent Kinase Inhibitor p16; Cyclin-Dependent Kinase Inhibitor p18; DNA (Cytosine-5-)-Methyltransferases; DNA Methyltransferase 3A; Epithelial Cells; Epithelium; Humans; Karyotype; Lung Neoplasms; Mesothelioma; Mesothelioma, Malignant; Mixed Function Oxygenases; Precancerous Conditions; Proto-Oncogene Proteins; Rats; Rats, Inbred F344

2016
Zinc Finger Protein 618 Regulates the Function of UHRF2 (Ubiquitin-like with PHD and Ring Finger Domains 2) as a Specific 5-Hydroxymethylcytosine Reader.
    The Journal of biological chemistry, 2016, Jun-24, Volume: 291, Issue:26

    Topics: 5-Methylcytosine; CCAAT-Enhancer-Binding Proteins; Chromatin; Cytosine; DNA-Binding Proteins; HEK293 Cells; Humans; Ubiquitin-Protein Ligases

2016
Single base resolution analysis of 5-hydroxymethylcytosine in 188 human genes: implications for hepatic gene expression.
    Nucleic acids research, 2016, 08-19, Volume: 44, Issue:14

    Topics: 5-Methylcytosine; Adult; Base Pairing; Base Sequence; Chromatography, Liquid; CpG Islands; DNA; Gene Expression Regulation; Genes; Humans; Liver; Mass Spectrometry; Reproducibility of Results; Sequence Analysis, DNA; Sulfites

2016
TET2 Regulates Mast Cell Differentiation and Proliferation through Catalytic and Non-catalytic Activities.
    Cell reports, 2016, 05-17, Volume: 15, Issue:7

    Topics: 5-Methylcytosine; Ascorbic Acid; Biocatalysis; CCAAT-Enhancer-Binding Proteins; Cell Differentiation; Cell Proliferation; Cytokines; Dioxygenases; DNA-Binding Proteins; Gene Deletion; Gene Expression Regulation; Gene Knockdown Techniques; Genome; HEK293 Cells; Humans; Male; Mast Cells; Proto-Oncogene Proteins; Sequence Analysis, RNA; Transcription, Genetic

2016
Similar kinetics for 5-methylcytosine and 5-hydroxymethylcytosine during human preimplantation development in vitro.
    Molecular reproduction and development, 2016, Volume: 83, Issue:7

    Topics: 5-Methylcytosine; Animals; Blastocyst; DNA Methylation; Embryonic Development; Humans; Mice

2016
DNA cytosine hydroxymethylation levels are distinct among non-overlapping classes of peripheral blood leukocytes.
    Journal of immunological methods, 2016, Volume: 436

    Topics: 5-Methylcytosine; B-Lymphocytes; Cell Separation; DNA Methylation; DNA Repair; DNA-Binding Proteins; Epigenesis, Genetic; Humans; T-Lymphocytes

2016
Subsets of Visceral Adipose Tissue Nuclei with Distinct Levels of 5-Hydroxymethylcytosine.
    PloS one, 2016, Volume: 11, Issue:5

    Topics: 5-Methylcytosine; Adipocytes; Animals; Base Sequence; Biomarkers; Cell Cycle; Cell Nucleus; Chromatin; DNA; Flow Cytometry; Fluorescent Antibody Technique; Gene Expression Profiling; Intra-Abdominal Fat; Pluripotent Stem Cells; PPAR gamma; RNA, Messenger; Sus scrofa

2016
5-hydroxymethylcytosine marks regions with reduced mutation frequency in human DNA.
    eLife, 2016, 05-16, Volume: 5

    Topics: 5-Methylcytosine; Brain Neoplasms; CpG Islands; Databases, Genetic; DNA Methylation; DNA, Neoplasm; Epigenesis, Genetic; Exome Sequencing; Humans; Kidney Neoplasms; Mutation Rate; Myelodysplastic Syndromes; Myeloid Cells

2016
Loss of Tet1-Associated 5-Hydroxymethylcytosine Is Concomitant with Aberrant Promoter Hypermethylation in Liver Cancer.
    Cancer research, 2016, 05-15, Volume: 76, Issue:10

    Topics: 5-Methylcytosine; Animals; Carcinoma, Hepatocellular; Cell Differentiation; CpG Islands; DNA Methylation; DNA-Binding Proteins; Histones; Liver Neoplasms, Experimental; Mice; Promoter Regions, Genetic; Proto-Oncogene Proteins; Real-Time Polymerase Chain Reaction; Reverse Transcriptase Polymerase Chain Reaction; RNA, Messenger; Tumor Cells, Cultured

2016
Genome-wide alteration of 5-hydroxymenthylcytosine in a mouse model of Alzheimer's disease.
    BMC genomics, 2016, 05-20, Volume: 17

    Topics: 5-Methylcytosine; Aging; Alzheimer Disease; Amyloid beta-Peptides; Amyloid beta-Protein Precursor; Animals; Cell Line; Disease Models, Animal; DNA Methylation; Epigenesis, Genetic; Genome-Wide Association Study; Humans; Mice; Mice, Transgenic

2016
DNA CpG Methylation (5-Methylcytosine) and Its Derivative (5-Hydroxymethylcytosine) Alter Histone Posttranslational Modifications at the Pomc Promoter, Affecting the Impact of Perinatal Diet on Leanness and Obesity of the Offspring.
    Diabetes, 2016, Volume: 65, Issue:8

    Topics: 5-Methylcytosine; Animals; Brain; CpG Islands; Diet, High-Fat; DNA Methylation; Histones; Hypothalamus; Obesity; Pro-Opiomelanocortin; Promoter Regions, Genetic; Rats; Rats, Wistar; Sulfites; Thinness

2016
Whole-genome DNA methylation and hydroxymethylation profiling for HBV-related hepatocellular carcinoma.
    International journal of oncology, 2016, Volume: 49, Issue:2

    Topics: 5-Methylcytosine; Carcinoma, Hepatocellular; DNA Methylation; Genome-Wide Association Study; Hepatitis B virus; Hepatitis B, Chronic; Humans; Liver Neoplasms; Promoter Regions, Genetic

2016
The Influence of Hydroxylation on Maintaining CpG Methylation Patterns: A Hidden Markov Model Approach.
    PLoS computational biology, 2016, Volume: 12, Issue:5

    Topics: 5-Methylcytosine; Animals; Cell Division; Computational Biology; CpG Islands; DNA Methylation; DNA Replication; Embryonic Stem Cells; Hydroxylation; Markov Chains; Mice; Models, Biological; Stochastic Processes; Sulfites

2016
Impairment of DNA Methylation Maintenance Is the Main Cause of Global Demethylation in Naive Embryonic Stem Cells.
    Molecular cell, 2016, 06-16, Volume: 62, Issue:6

    Topics: 5-Methylcytosine; Animals; CCAAT-Enhancer-Binding Proteins; Cells, Cultured; Cellular Reprogramming; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Histones; Mice; Models, Genetic; Mutation; Nuclear Proteins; Proto-Oncogene Proteins; Time Factors; Transfection; Ubiquitin-Protein Ligases

2016
Pitfalls in mitochondrial epigenetics.
    Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis, 2017, Volume: 28, Issue:5

    Topics: 5-Methylcytosine; Animals; DNA Methylation; Epigenesis, Genetic; Genome, Mitochondrial; Mice; Mitochondria

2017
Methylation-assisted bisulfite sequencing to simultaneously map 5fC and 5caC on a genome-wide scale for DNA demethylation analysis.
    Nature protocols, 2016, Volume: 11, Issue:7

    Topics: 5-Methylcytosine; Animals; Base Sequence; Cell Line; CpG Islands; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Humans; Mice; Sequence Analysis, DNA; Sulfites

2016
TET2-mediated 5-hydroxymethylcytosine induces genetic instability and mutagenesis.
    DNA repair, 2016, Volume: 43

    Topics: 5-Methylcytosine; Animals; B-Lymphocytes; Base Sequence; Cell Line; Cytosine; Dioxygenases; DNA Repair; DNA-Binding Proteins; Epigenesis, Genetic; Fibroblasts; Genomic Instability; Humans; Hydroxylation; Megakaryocyte Progenitor Cells; Mice; Mutagenesis; Proto-Oncogene Proteins; S Phase; Thymine DNA Glycosylase; Tumor Suppressor Protein p53

2016
Expression of TET2 enzyme indicates enhanced epigenetic modification of cells in periodontitis.
    European journal of oral sciences, 2016, Volume: 124, Issue:4

    Topics: 5-Methylcytosine; Adult; Case-Control Studies; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Female; Humans; Male; Periodontitis; Proto-Oncogene Proteins

2016
5-Hydroxymethylcytosine Remodeling Precedes Lineage Specification during Differentiation of Human CD4(+) T Cells.
    Cell reports, 2016, 07-12, Volume: 16, Issue:2

    Topics: 5-Methylcytosine; CD4-Positive T-Lymphocytes; Cell Differentiation; Cell Lineage; Cells, Cultured; DNA Methylation; Gene Expression Regulation; Humans

2016
Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction.
    Nature biotechnology, 2016, Volume: 34, Issue:8

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cell Lineage; Chromosome Mapping; Chromosomes; Computer Simulation; Embryonic Development; Epigenesis, Genetic; Genetic Variation; Male; Mice; Models, Chemical; Models, Genetic; Sequence Analysis, DNA

2016
Quantification of Oxidized 5-Methylcytosine Bases and TET Enzyme Activity.
    Methods in enzymology, 2016, Volume: 573

    Topics: 5-Methylcytosine; Animals; Cell Line; Chromatography, High Pressure Liquid; Dioxygenases; DNA; DNA Methylation; DNA-Binding Proteins; Enzyme Assays; Humans; Immunoblotting; Insecta; Mixed Function Oxygenases; Nucleosides; Oligonucleotides; Oxidation-Reduction; Proto-Oncogene Proteins; Recombinant Proteins; Tandem Mass Spectrometry

2016
Quantifying mammalian genomic DNA hydroxymethylcytosine content using solid-state nanopores.
    Scientific reports, 2016, 07-07, Volume: 6

    Topics: 5-Methylcytosine; Animals; Biotinylation; DNA; Epigenesis, Genetic; Genomics; Mice; Nanopores; Oligonucleotides; Reproducibility of Results; Sensitivity and Specificity; Tandem Mass Spectrometry; Ultrasonics

2016
Age-associated hydroxymethylation in human bone-marrow mesenchymal stem cells.
    Journal of translational medicine, 2016, 07-08, Volume: 14, Issue:1

    Topics: 5-Methylcytosine; Adolescent; Adult; Aged; Aged, 80 and over; Aging; Bone Marrow Cells; Child; Child, Preschool; Chromatin; CpG Islands; DNA Methylation; Genome, Human; Genomics; Humans; Mesenchymal Stem Cells; Middle Aged; Young Adult

2016
5-hydroxymethylcytosine marks postmitotic neural cells in the adult and developing vertebrate central nervous system.
    The Journal of comparative neurology, 2017, 02-15, Volume: 525, Issue:3

    Topics: 5-Methylcytosine; Animals; Animals, Genetically Modified; Brain; Dermoscopy; Green Fluorescent Proteins; Immunohistochemistry; In Situ Hybridization; Male; Mice; Microscopy, Confocal; Neural Stem Cells; Neurogenesis; Neuroglia; Neurons; Olfactory Mucosa; Real-Time Polymerase Chain Reaction; Xenopus; Zebrafish

2017
Isolation of Human Genomic DNA Sequences with Expanded Nucleobase Selectivity.
    Journal of the American Chemical Society, 2016, 08-10, Volume: 138, Issue:31

    Topics: 5-Methylcytosine; Animals; Antibodies; Biomarkers; Borohydrides; DNA; DNA Methylation; Epigenesis, Genetic; Escherichia coli; Genome, Human; Genomics; Humans; Male; Protein Binding; Xanthomonas axonopodis; Zebrafish

2016
5-Hydroxymethylcytosine Expression in Proliferative Nodules Arising within Congenital Nevi Allows Differentiation from Malignant Melanoma.
    The Journal of investigative dermatology, 2016, Volume: 136, Issue:12

    Topics: 5-Methylcytosine; Adult; Analysis of Variance; Biopsy, Needle; Cohort Studies; Diagnosis, Differential; Disease Progression; Dysplastic Nevus Syndrome; Epigenesis, Genetic; Female; Gene Expression Regulation, Neoplastic; Humans; Immunohistochemistry; Male; Melanoma; Melanoma, Cutaneous Malignant; Nevus, Pigmented; Real-Time Polymerase Chain Reaction; Reproducibility of Results; Retrospective Studies; Skin Neoplasms

2016
Immunohistochemical loss of 5-hydroxymethylcytosine expression in acute myeloid leukaemia: relationship to somatic gene mutations affecting epigenetic pathways.
    Histopathology, 2016, Volume: 69, Issue:6

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Biomarkers, Tumor; DNA Mutational Analysis; Epigenesis, Genetic; Female; High-Throughput Nucleotide Sequencing; History, 17th Century; Humans; Immunohistochemistry; Leukemia, Myeloid, Acute; Male; Middle Aged; Mutation

2016
Neurofilament-labeled pyramidal neurons and astrocytes are deficient in DNA methylation marks in Alzheimer's disease.
    Neurobiology of aging, 2016, Volume: 45

    Topics: 5-Methylcytosine; Aged; Aged, 80 and over; Alzheimer Disease; Astrocytes; Biomarkers; DNA Methylation; Female; Humans; Immunohistochemistry; Intermediate Filaments; Male; Middle Aged; Neurofibrillary Tangles; Pyramidal Cells

2016
Simple and accurate single base resolution analysis of 5-hydroxymethylcytosine by catalytic oxidative bisulfite sequencing using micelle incarcerated oxidants.
    Bioorganic & medicinal chemistry, 2016, 09-15, Volume: 24, Issue:18

    Topics: 5-Methylcytosine; Adamantane; Animals; Cyclic N-Oxides; Cytosine; DNA, Single-Stranded; Embryonic Stem Cells; Iodobenzenes; Mice; Micelles; Onium Compounds; Oxidants; Oxidation-Reduction; Sequence Analysis, DNA; Sodium Dodecyl Sulfate; Sulfites; Temperature

2016
Isocitrate Dehydrogenase 2 Dysfunction Contributes to 5-hydroxymethylcytosine Depletion in Gastric Cancer Cells.
    Anticancer research, 2016, Volume: 36, Issue:8

    Topics: 5-Methylcytosine; Cytosine; DNA Methylation; Female; Humans; Isocitrate Dehydrogenase; Ketoglutaric Acids; Male; Stomach Neoplasms

2016
Human blood cell levels of 5-hydroxymethylcytosine (5hmC) decline with age, partly related to acquired mutations in TET2.
    Experimental hematology, 2016, Volume: 44, Issue:11

    Topics: 5-Methylcytosine; Age Factors; Aged; Aged, 80 and over; Biomarkers; Blood Cells; Chromatography, Liquid; Dioxygenases; DNA-Binding Proteins; Humans; Leukemia, Myeloid; Mass Spectrometry; Metabolomics; Mutation; Proto-Oncogene Proteins

2016
Dnmt3a and Dnmt3b Associate with Enhancers to Regulate Human Epidermal Stem Cell Homeostasis.
    Cell stem cell, 2016, 10-06, Volume: 19, Issue:4

    Topics: 5-Methylcytosine; Base Sequence; Cell Differentiation; Dioxygenases; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3A; DNA Methyltransferase 3B; DNA-Binding Proteins; Enhancer Elements, Genetic; Epidermal Cells; Histones; Homeostasis; Humans; Keratinocytes; Lysine; Protein Binding; Proto-Oncogene Proteins; Stem Cells; Transcription Factors; Tumor Suppressor Proteins

2016
A Highly Sensitive and Robust Method for Genome-wide 5hmC Profiling of Rare Cell Populations.
    Molecular cell, 2016, 08-18, Volume: 63, Issue:4

    Topics: 5-Methylcytosine; Animals; Cells, Cultured; Computational Biology; Databases, Genetic; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; fms-Like Tyrosine Kinase 3; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; Gene Library; Genome-Wide Association Study; Hematopoiesis; Hematopoietic Stem Cells; High-Throughput Nucleotide Sequencing; Leukemia, Promyelocytic, Acute; Mice; Mutation; Nanotechnology; Proto-Oncogene Proteins; Time Factors

2016
5-Hydroxymethylcytosine in E-box motifs ACAT|GTG and ACAC|GTG increases DNA-binding of the B-HLH transcription factor TCF4.
    Integrative biology : quantitative biosciences from nano to macro, 2016, 09-12, Volume: 8, Issue:9

    Topics: 5-Methylcytosine; Basic Helix-Loop-Helix Leucine Zipper Transcription Factors; Binding Sites; DNA; DNA-Binding Proteins; E-Box Elements; Protein Array Analysis; Protein Binding; Protein Interaction Domains and Motifs; Protein Interaction Mapping; Transcription Factor 4

2016
Erasure of DNA methylation, genomic imprints, and epimutations in a primordial germ-cell model derived from mouse pluripotent stem cells.
    Proceedings of the National Academy of Sciences of the United States of America, 2016, 08-23, Volume: 113, Issue:34

    Topics: 5-Methylcytosine; Animals; Calcium-Binding Proteins; DNA Demethylation; DNA Methylation; Embryo, Mammalian; Epigenesis, Genetic; Female; Genome; Genomic Imprinting; Germ Cells; High-Throughput Nucleotide Sequencing; Intercellular Signaling Peptides and Proteins; Iodide Peroxidase; Male; Mice; Mutation; Pluripotent Stem Cells; RNA, Long Noncoding

2016
DNA hydroxymethylation controls cardiomyocyte gene expression in development and hypertrophy.
    Nature communications, 2016, 08-04, Volume: 7

    Topics: 5-Methylcytosine; Animals; Cardiomegaly; Cell Differentiation; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Enhancer Elements, Genetic; Gene Expression Regulation, Developmental; Gene Knockdown Techniques; Genome; Mice, Inbred C57BL; Myocytes, Cardiac; Proto-Oncogene Proteins; Repetitive Sequences, Nucleic Acid; Transcription, Genetic

2016
Maternal Methyl-Group Donor Intake and Global DNA (Hydroxy)Methylation before and during Pregnancy.
    Nutrients, 2016, Aug-06, Volume: 8, Issue:8

    Topics: 5-Methylcytosine; Adult; Belgium; Betaine; Biomarkers; Choline; Cohort Studies; Cytosine; Diet; Dietary Supplements; DNA Methylation; Feeding Behavior; Female; Folic Acid; Humans; Hydroxylation; Leukocytes; Longitudinal Studies; Maternal Nutritional Physiological Phenomena; Methionine; Pregnancy; Prospective Studies; Self Report

2016
oxBS-MLE: an efficient method to estimate 5-methylcytosine and 5-hydroxymethylcytosine in paired bisulfite and oxidative bisulfite treated DNA.
    Bioinformatics (Oxford, England), 2016, 12-01, Volume: 32, Issue:23

    Topics: 5-Methylcytosine; Computational Biology; CpG Islands; DNA; DNA Methylation; Models, Theoretical; Sequence Analysis, DNA

2016
Immune Regulator MCPIP1 Modulates TET Expression during Early Neocortical Development.
    Stem cell reports, 2016, 09-13, Volume: 7, Issue:3

    Topics: 5-Methylcytosine; Animals; Base Sequence; Binding Sites; Cell Differentiation; Cell Self Renewal; DNA Methylation; Gene Expression Regulation, Developmental; Mice; Neocortex; Neural Stem Cells; Neurogenesis; Nucleotide Motifs; Organogenesis; Protein Binding; Protein Interaction Domains and Motifs; Ribonucleases

2016
Filtrating colorectal cancer associated genes by integrated analyses of global DNA methylation and hydroxymethylation in cancer and normal tissue.
    Scientific reports, 2016, 08-22, Volume: 6

    Topics: 5-Methylcytosine; Arachidonate 15-Lipoxygenase; Colorectal Neoplasms; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Gene Regulatory Networks; Glycoproteins; Humans; Sequence Analysis, DNA; Transketolase

2016
IDH1/2 Mutants Inhibit TET-Promoted Oxidation of RNA 5mC to 5hmC.
    PloS one, 2016, Volume: 11, Issue:8

    Topics: 5-Methylcytosine; Cell Line, Tumor; Dioxygenases; DNA; DNA-Binding Proteins; Gene Expression Regulation; HEK293 Cells; Humans; Isocitrate Dehydrogenase; Mixed Function Oxygenases; Mutation; Osteoblasts; Oxidation-Reduction; Plasmids; Proto-Oncogene Proteins; RNA; Signal Transduction; Transfection

2016
Sex-specific hippocampal 5-hydroxymethylcytosine is disrupted in response to acute stress.
    Neurobiology of disease, 2016, Volume: 96

    Topics: 5-Methylcytosine; Animals; Chromatin Immunoprecipitation; Disease Models, Animal; Epigenesis, Genetic; Female; Gene Ontology; Hippocampus; Male; Methylation; Mice; Mice, Inbred C57BL; Sex Factors; Stress, Psychological

2016
Stage-Specific Demethylation in Primordial Germ Cells Safeguards against Precocious Differentiation.
    Developmental cell, 2016, 10-10, Volume: 39, Issue:1

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; Embryo, Mammalian; Female; Gene Deletion; Germ Cells; Male; Meiosis; Mice, Knockout; Promoter Regions, Genetic; RNA-Binding Proteins

2016
Discrimination between 5-Hydroxymethylcytosine and 5-Methylcytosine in DNA via Selective Electrogenerated Chemiluminescence (ECL) Labeling.
    Analytical chemistry, 2016, 10-18, Volume: 88, Issue:20

    Topics: 5-Methylcytosine; Biosensing Techniques; Cytosine; DNA; DNA Probes; Humans; Limit of Detection; Luminescence; Luminol; Nucleic Acid Hybridization; Oxidation-Reduction; Ruthenium

2016
TET3 Mediates Alterations in the Epigenetic Marker 5hmC and Akt pathway in Steroid-Associated Osteonecrosis.
    Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research, 2017, Volume: 32, Issue:2

    Topics: 5-Methylcytosine; Aged; Aged, 80 and over; Animals; Apoptosis; Dexamethasone; Dioxygenases; DNA-Binding Proteins; Epigenesis, Genetic; Femur Head; Gene Knockdown Techniques; Humans; Mice; Middle Aged; Models, Biological; Osteocytes; Osteonecrosis; Proto-Oncogene Proteins; Proto-Oncogene Proteins c-akt; Signal Transduction; Steroids; Up-Regulation

2017
Chiral Antioxidant-based Gold Nanoclusters Reprogram DNA Epigenetic Patterns.
    Scientific reports, 2016, 09-16, Volume: 6

    Topics: 5-Methylcytosine; Antioxidants; Biocatalysis; Cell Death; Cell Line, Tumor; DNA; DNA-Binding Proteins; Epigenesis, Genetic; Glutathione; Gold; HEK293 Cells; Humans; Metal Nanoparticles; Reactive Oxygen Species; Stereoisomerism

2016
Glucosylation Mediated Rolling Circle Amplification Combined with a qPCR Assay for the Detection of 5-Hydroxymethylcytosine.
    Analytical sciences : the international journal of the Japan Society for Analytical Chemistry, 2016, Volume: 32, Issue:9

    Topics: 5-Methylcytosine; DNA; Glucose; Glycosylation; Polymerase Chain Reaction

2016
Preferential 5-Methylcytosine Oxidation in the Linker Region of Reconstituted Positioned Nucleosomes by Tet1 Protein.
    Chemistry (Weinheim an der Bergstrasse, Germany), 2016, Nov-07, Volume: 22, Issue:46

    Topics: 5-Methylcytosine; Cytosine; DNA; DNA Methylation; Nucleosomes; Oxidation-Reduction

2016
5-Hydroxymethylcytosine is an independent predictor of survival in malignant melanoma.
    Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 2017, Volume: 30, Issue:1

    Topics: 5-Methylcytosine; Age Factors; Aged; Female; Humans; Male; Melanoma; Middle Aged; Neoplasm Staging; Prognosis; Retrospective Studies; Skin; Skin Neoplasms; Survival Rate

2017
Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver.
    Genome research, 2016, Volume: 26, Issue:12

    Topics: 5-Methylcytosine; CpG Islands; DNA; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation; Humans; Liver; Lung; Neoplasms; Organ Specificity; Promoter Regions, Genetic; Whole Genome Sequencing

2016
Loss of UHRF2 expression is associated with human neoplasia, promoter hypermethylation, decreased 5-hydroxymethylcytosine, and high proliferative activity.
    Oncotarget, 2016, Nov-15, Volume: 7, Issue:46

    Topics: 5-Methylcytosine; Biomarkers, Tumor; Cell Line, Tumor; Cell Proliferation; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Humans; Lymphocytes; Lymphoid Progenitor Cells; Neoplasm Grading; Neoplasms; Promoter Regions, Genetic; Protein Transport; Ubiquitin-Protein Ligases

2016
Base-Resolution Analysis of 5-Hydroxymethylcytosine by One-Pot Bisulfite-Free Chemical Conversion with Peroxotungstate.
    Journal of the American Chemical Society, 2016, 11-02, Volume: 138, Issue:43

    Topics: 5-Methylcytosine; Base Pairing; Base Sequence; DNA; Selenium Radioisotopes; Sulfites; Tungsten Compounds

2016
Loss of Uhrf1 in neural stem cells leads to activation of retroviral elements and delayed neurodegeneration.
    Genes & development, 2016, Oct-01, Volume: 30, Issue:19

    Topics: 5-Methylcytosine; Animals; CCAAT-Enhancer-Binding Proteins; Cell Survival; Cerebral Cortex; DNA Methylation; Gene Deletion; Genes, Intracisternal A-Particle; Mice; Mice, Knockout; Neural Stem Cells; Neurogenesis; Nuclear Proteins; Ubiquitin-Protein Ligases; Virus Activation

2016
Tet methylcytosine dioxygenase 2 inhibits atherosclerosis via upregulation of autophagy in ApoE-/- mice.
    Oncotarget, 2016, 11-22, Volume: 7, Issue:47

    Topics: 5-Methylcytosine; Animals; Apolipoproteins E; Atherosclerosis; Autophagy; Cytokines; Dioxygenases; Disease Models, Animal; DNA Methylation; DNA-Binding Proteins; Gene Expression; Gene Expression Regulation; Human Umbilical Vein Endothelial Cells; Humans; Immunohistochemistry; Inflammation Mediators; Lipoproteins, LDL; Male; Mice; Mice, Knockout; Plaque, Atherosclerotic; Proto-Oncogene Proteins

2016
A reusable laser wrapped graphene-Ag array based SERS sensor for trace detection of genomic DNA methylation.
    Biosensors & bioelectronics, 2017, Jun-15, Volume: 92

    Topics: 5-Methylcytosine; Antibodies, Immobilized; Biosensing Techniques; Cell Line, Tumor; Cytosine; DNA; DNA Methylation; Equipment Design; Gold; Graphite; Humans; Metal Nanoparticles; Reproducibility of Results; Silver; Spectrum Analysis, Raman

2017
Vitamin C enhances substantially formation of 5-hydroxymethyluracil in cellular DNA.
    Free radical biology & medicine, 2016, Volume: 101

    Topics: 5-Methylcytosine; Ascorbic Acid; Cytosine; DNA; DNA Methylation; HCT116 Cells; Humans; Mixed Function Oxygenases; Oxidation-Reduction; Pentoxyl; Proto-Oncogene Proteins; Spectrometry, Mass, Electrospray Ionization; Thymine

2016
Regulatory landscape and clinical implication of MBD3 in human malignant glioma.
    Oncotarget, 2016, Dec-06, Volume: 7, Issue:49

    Topics: 5-Methylcytosine; Brain Neoplasms; Cell Line, Tumor; Disease-Free Survival; DNA-Binding Proteins; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; Glioma; High-Throughput Nucleotide Sequencing; HLA-D Antigens; Humans; MicroRNAs; Oligonucleotide Array Sequence Analysis; Pilot Projects; RNA Interference; RNA, Long Noncoding; RNA, Untranslated; Signal Transduction; Time Factors; Transcription, Genetic; Transfection

2016
Epigenetic upregulation of ARL4C, due to DNA hypomethylation in the 3'-untranslated region, promotes tumorigenesis of lung squamous cell carcinoma.
    Oncotarget, 2016, Dec-06, Volume: 7, Issue:49

    Topics: 3' Untranslated Regions; 5-Methylcytosine; A549 Cells; ADP-Ribosylation Factors; Adult; Aged; Aged, 80 and over; Carcinoma, Squamous Cell; Cell Movement; Cell Proliferation; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Female; Gene Expression Regulation, Neoplastic; Head and Neck Neoplasms; HeLa Cells; Humans; Lung Neoplasms; Male; Middle Aged; Mixed Function Oxygenases; Neoplasm Invasiveness; Proto-Oncogene Proteins; RNA Interference; Signal Transduction; Squamous Cell Carcinoma of Head and Neck; Time Factors; Tongue Neoplasms; Transfection; Up-Regulation

2016
5'-Hydroxymethylcytosine Precedes Loss of CpG Methylation in Enhancers and Genes Undergoing Activation in Cardiomyocyte Maturation.
    PloS one, 2016, Volume: 11, Issue:11

    Topics: 5-Methylcytosine; Animals; Animals, Newborn; Cell Differentiation; Cell Nucleus; CpG Islands; DNA Methylation; DNA, Intergenic; Enhancer Elements, Genetic; Flow Cytometry; Genetic Loci; Genome; Male; Mice, Inbred C57BL; Myocytes, Cardiac; Sequence Analysis, DNA; Transcription, Genetic; Transcriptional Activation

2016
Epigenetic silencing of TET2 and TET3 induces an EMT-like process in melanoma.
    Oncotarget, 2017, Jan-03, Volume: 8, Issue:1

    Topics: 5-Methylcytosine; Animals; Azacitidine; Cell Line, Tumor; Chromatin Immunoprecipitation; Decitabine; Dioxygenases; Disease Progression; DNA (Cytosine-5-)-Methyltransferases; DNA Demethylation; DNA Methylation; DNA Methyltransferase 3A; DNA-Binding Proteins; Down-Regulation; Epigenesis, Genetic; Epithelial-Mesenchymal Transition; Gene Expression Regulation, Neoplastic; Gene Knockdown Techniques; Humans; Male; Melanoma; Mice; Mice, Inbred C57BL; Microscopy, Fluorescence; Promoter Regions, Genetic; Proto-Oncogene Proteins; RNA, Small Interfering; Transforming Growth Factor beta1; Xenograft Model Antitumor Assays

2017
The Yin-Yang Dynamics of DNA Methylation Is the Key Regulator for Smooth Muscle Cell Phenotype Switch and Vascular Remodeling.
    Arteriosclerosis, thrombosis, and vascular biology, 2017, Volume: 37, Issue:1

    Topics: 5-Methylcytosine; Animals; Aorta; Aortic Diseases; Apolipoproteins E; Atherosclerosis; Azacitidine; Cell Dedifferentiation; Cell Movement; Cell Proliferation; Cells, Cultured; Decitabine; Diet, High-Fat; Dioxygenases; Disease Models, Animal; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA-Binding Proteins; Enzyme Inhibitors; Epigenesis, Genetic; Genetic Predisposition to Disease; Mice, Knockout; Muscle, Smooth, Vascular; Myocytes, Smooth Muscle; Nuclear Proteins; Phenotype; Promoter Regions, Genetic; Proto-Oncogene Proteins; Rats; Signal Transduction; Time Factors; Trans-Activators; Vascular Remodeling

2017
Tet3-Mediated DNA Demethylation Contributes to the Direct Conversion of Fibroblast to Functional Neuron.
    Cell reports, 2016, 11-22, Volume: 17, Issue:9

    Topics: 5-Methylcytosine; Animals; Biomarkers; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Electrophysiological Phenomena; Embryo, Mammalian; Fibroblasts; Mice, Inbred C57BL; Mice, Inbred ICR; Neurons; Oxidation-Reduction; Proto-Oncogene Proteins; Transcription, Genetic

2016
5-Hydroxymethylcytosine localizes to enhancer elements and is associated with survival in glioblastoma patients.
    Nature communications, 2016, 11-25, Volume: 7

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Brain Neoplasms; DNA Methylation; DNA, Neoplasm; Enhancer Elements, Genetic; Female; Gene Expression Regulation, Neoplastic; Gene Regulatory Networks; Glioblastoma; Humans; Isocitrate Dehydrogenase; Male; Middle Aged; Prefrontal Cortex; Survival Analysis; Transcription Factors

2016
Multiregional analysis of global 5-methylcytosine and 5-hydroxymethylcytosine throughout the progression of Alzheimer's disease.
    Journal of neurochemistry, 2017, Volume: 140, Issue:3

    Topics: 5-Methylcytosine; Aged; Aged, 80 and over; Alzheimer Disease; Brain; Disease Progression; Epigenesis, Genetic; Female; Gas Chromatography-Mass Spectrometry; Humans; Male

2017
Association of 5-hydroxymethylation and 5-methylation of DNA cytosine with tissue-specific gene expression.
    Epigenetics, 2017, Volume: 12, Issue:2

    Topics: 5-Methylcytosine; Adult; Aged; Brain; Cadherins; Child, Preschool; DNA Methylation; Female; Homeodomain Proteins; Humans; Male; Muscle, Skeletal; Myoblasts; Myocardium; Organ Specificity; Promoter Regions, Genetic; Transcription Factors

2017
Comprehensive mapping of 5-hydroxymethylcytosine epigenetic dynamics in axon regeneration.
    Epigenetics, 2017, Volume: 12, Issue:2

    Topics: 5-Methylcytosine; Activating Transcription Factor 3; Animals; Brain-Derived Neurotrophic Factor; DNA Methylation; Epigenesis, Genetic; Female; Ganglia, Spinal; Mice; Nerve Regeneration; Neuronal Outgrowth; Neurons; Smad1 Protein

2017
Mutations along a TET2 active site scaffold stall oxidation at 5-hydroxymethylcytosine.
    Nature chemical biology, 2017, Volume: 13, Issue:2

    Topics: 5-Methylcytosine; Catalytic Domain; Dioxygenases; DNA-Binding Proteins; HEK293 Cells; Humans; Molecular Dynamics Simulation; Mutation; Oxidation-Reduction; Proto-Oncogene Proteins

2017
Binding of MBD proteins to DNA blocks Tet1 function thereby modulating transcriptional noise.
    Nucleic acids research, 2017, 03-17, Volume: 45, Issue:5

    Topics: 5-Methylcytosine; Animals; Cells, Cultured; DNA; DNA-Binding Proteins; DNA, Satellite; Humans; Male; Methyl-CpG-Binding Protein 2; Mice; Mice, Inbred C57BL; Mice, Knockout; Neurons; Oxidation-Reduction; Proto-Oncogene Proteins; Rats; Rett Syndrome; Transcription, Genetic

2017
Tet proteins influence the balance between neuroectodermal and mesodermal fate choice by inhibiting Wnt signaling.
    Proceedings of the National Academy of Sciences of the United States of America, 2016, 12-20, Volume: 113, Issue:51

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cell Lineage; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Epigenesis, Genetic; Genome-Wide Association Study; Mesoderm; Mice; Mice, Knockout; Myocardium; Neural Plate; Proto-Oncogene Proteins; Wnt Signaling Pathway

2016
5-Methylcytosine (5mC) and 5-Hydroxymethylcytosine (5hmC) Enhance the DNA Binding of CREB1 to the C/EBP Half-Site Tetranucleotide GCAA.
    Biochemistry, 2016, Dec-13, Volume: 55, Issue:49

    Topics: 5-Methylcytosine; Animals; CCAAT-Enhancer-Binding Proteins; Cyclic AMP Response Element-Binding Protein; DNA; Mice; Promoter Regions, Genetic

2016
DNA demethylation mediated by down-regulated TETs in the testes of rare minnow Gobiocypris rarus under bisphenol A exposure.
    Chemosphere, 2017, Volume: 171

    Topics: 5-Methylcytosine; Animals; Benzhydryl Compounds; Cyprinidae; DNA Methylation; Dose-Response Relationship, Drug; Down-Regulation; Environmental Pollutants; Fish Proteins; Glutathione; Male; Phenols; Testis

2017
5-Hydroxymethylcytosine is a nuclear biomarker to assess biological potential in histologically ambiguous heavily pigmented melanocytic neoplasms.
    Journal of cutaneous pathology, 2017, Volume: 44, Issue:3

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Biomarkers, Tumor; Cohort Studies; Female; Fluorescent Antibody Technique; Humans; Immunohistochemistry; Male; Melanoma; Middle Aged; Nevus, Pigmented; Retrospective Studies; Skin Neoplasms; Young Adult

2017
5-Hydroxymethylcytosine correlates with epigenetic regulatory mutations, but may not have prognostic value in predicting survival in normal karyotype acute myeloid leukemia.
    Oncotarget, 2017, Jan-31, Volume: 8, Issue:5

    Topics: 5-Methylcytosine; Adolescent; Adult; Aged; Aged, 80 and over; Biomarkers, Tumor; Dioxygenases; Disease Progression; Disease-Free Survival; DNA Mutational Analysis; DNA-Binding Proteins; Enzyme-Linked Immunosorbent Assay; Epigenesis, Genetic; Female; Genetic Predisposition to Disease; Humans; Isocitrate Dehydrogenase; Kaplan-Meier Estimate; Karyotype; Leukemia, Myeloid, Acute; Male; Middle Aged; Mutation; Phenotype; Predictive Value of Tests; Proportional Hazards Models; Proto-Oncogene Proteins; Recurrence; Time Factors; Treatment Outcome; Young Adult

2017
Spectroscopic quantification of 5-hydroxymethylcytosine in genomic DNA using boric acid-functionalized nano-microsphere fluorescent probes.
    Biosensors & bioelectronics, 2017, May-15, Volume: 91

    Topics: 5-Methylcytosine; Animals; Boric Acids; Brain Chemistry; DNA; Fluorescent Dyes; Liver; Mice; Myocardium; Polymethacrylic Acids; Quinolines; Spectrometry, Fluorescence

2017
NEIL3-Dependent Regulation of Cardiac Fibroblast Proliferation Prevents Myocardial Rupture.
    Cell reports, 2017, 01-03, Volume: 18, Issue:1

    Topics: 5-Methylcytosine; Cell Proliferation; Collagen; Connective Tissue Diseases; DNA Damage; DNA Methylation; Endodeoxyribonucleases; Fibroblasts; Gene Expression Profiling; Gene Expression Regulation; Heart Failure; Heart-Assist Devices; Humans; Leukocytes; Matrix Metalloproteinase 2; Myocardial Infarction; Myocardium; Myofibroblasts; N-Glycosyl Hydrolases; Oxidation-Reduction; Phenotype; Sequence Analysis, RNA; Survival Analysis; Time Factors

2017
Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine.
    BMC genomics, 2017, 01-18, Volume: 18, Issue:1

    Topics: 5-Methylcytosine; Adult; DNA Methylation; Humans; Male; Oxidation-Reduction; Sequence Analysis, DNA; Sulfites

2017
TET-mediated hydroxymethylcytosine at the Pparγ locus is required for initiation of adipogenic differentiation.
    International journal of obesity (2005), 2017, Volume: 41, Issue:4

    Topics: 3T3-L1 Cells; 5-Methylcytosine; Adipocytes; Adipogenesis; Animals; Cell Differentiation; Cells, Cultured; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Gene Expression; Gene Knockdown Techniques; Mice; Mice, Inbred C57BL; PPAR gamma; Proto-Oncogene Proteins; Real-Time Polymerase Chain Reaction; Up-Regulation

2017
Acetylation Enhances TET2 Function in Protecting against Abnormal DNA Methylation during Oxidative Stress.
    Molecular cell, 2017, Jan-19, Volume: 65, Issue:2

    Topics: 5-Methylcytosine; Acetylation; Chromatin; Dioxygenases; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA-Binding Proteins; DNA, Neoplasm; E1A-Associated p300 Protein; HCT116 Cells; Histone Deacetylase 1; Histone Deacetylase 2; Humans; Neoplasms; Oxidative Stress; Protein Binding; Protein Processing, Post-Translational; Protein Stability; Proto-Oncogene Proteins; RNA Interference; Time Factors; Transfection; Ubiquitination

2017
Elevated 5-hydroxymethycytosine and cell apoptosis induced by tetrachloro-1,4-benzoquinone in mouse embryonic stem cells.
    Journal of environmental sciences (China), 2017, Volume: 51

    Topics: 5-Methylcytosine; Animals; Apoptosis; Chloranil; Cytosine; Fungicides, Industrial; Mice; Mouse Embryonic Stem Cells; Toxicity Tests

2017
Tetrachloro-1,4-benzoquinone induces apoptosis of mouse embryonic stem cells.
    Journal of environmental sciences (China), 2017, Volume: 51

    Topics: 5-Methylcytosine; Animals; Apoptosis; Chloranil; Cytosine; Fungicides, Industrial; Mice; Mouse Embryonic Stem Cells; Toxicity Tests

2017
The 5-Hydroxymethylcytosine (5hmC) Reader UHRF2 Is Required for Normal Levels of 5hmC in Mouse Adult Brain and Spatial Learning and Memory.
    The Journal of biological chemistry, 2017, 03-17, Volume: 292, Issue:11

    Topics: 5-Methylcytosine; Animals; Brain; Brain Chemistry; Cell Line; DNA Methylation; Female; Humans; Locomotion; Male; Memory; Mice; Mice, Knockout; Spatial Learning; Ubiquitin-Protein Ligases

2017
From the Cover: Zinc oxide Nanoparticles-Induced Reactive Oxygen Species Promotes Multimodal Cyto- and Epigenetic Toxicity.
    Toxicological sciences : an official journal of the Society of Toxicology, 2017, 03-01, Volume: 156, Issue:1

    Topics: 5-Methylcytosine; Actin Cytoskeleton; Carcinogens, Environmental; Cell Membrane; Cell Nucleus Size; Cell Survival; DNA Demethylation; Epigenesis, Genetic; Gene Expression Regulation, Enzymologic; HEK293 Cells; Hepatocytes; Humans; Metal Nanoparticles; Microscopy, Electron, Scanning; Microscopy, Electron, Transmission; Oxidative Stress; Oxidoreductases; Promoter Regions, Genetic; Reactive Oxygen Species; Repetitive Sequences, Nucleic Acid; Zinc Oxide

2017
Correlated 5-Hydroxymethylcytosine (5hmC) and Gene Expression Profiles Underpin Gene and Organ-Specific Epigenetic Regulation in Adult Mouse Brain and Liver.
    PloS one, 2017, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Aging; Animals; Cerebellum; Cerebral Cortex; DNA Methylation; Embryo, Mammalian; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; Genes, Essential; Genome; Hippocampus; Hypothalamus; Liver; Male; Mice; Mitochondrial Proteins; Organ Specificity; Ribosomal Proteins; Sequence Analysis, RNA; Sex Chromosomes; Thalamus; Transcriptome

2017
Early-life stress links 5-hydroxymethylcytosine to anxiety-related behaviors.
    Epigenetics, 2017, 04-03, Volume: 12, Issue:4

    Topics: 5-Methylcytosine; Animals; Anxiety; Female; Male; Mice; Stress, Physiological

2017
H(O)TA: estimation of DNA methylation and hydroxylation levels and efficiencies from time course data.
    Bioinformatics (Oxford, England), 2017, Jun-01, Volume: 33, Issue:11

    Topics: 5-Methylcytosine; CpG Islands; DNA; DNA Methylation; Epigenesis, Genetic; Hydroxylation; Models, Statistical; Sequence Analysis, DNA; Software

2017
Epigenomic landscape of 5-hydroxymethylcytosine reveals its transcriptional regulation of lncRNAs in colorectal cancer.
    British journal of cancer, 2017, Feb-28, Volume: 116, Issue:5

    Topics: 5-Methylcytosine; Colorectal Neoplasms; DNA Methylation; Epigenomics; Gene Expression Regulation, Neoplastic; Humans; Prognosis; RNA, Long Noncoding; Survival Analysis

2017
Accurate, Direct, and High-Throughput Analyses of a Broad Spectrum of Endogenously Generated DNA Base Modifications with Isotope-Dilution Two-Dimensional Ultraperformance Liquid Chromatography with Tandem Mass Spectrometry: Possible Clinical Implication.
    Analytical chemistry, 2016, 12-20, Volume: 88, Issue:24

    Topics: 5-Methylcytosine; Animals; Biomarkers; Brain; Chromatography, High Pressure Liquid; Colorectal Neoplasms; Deoxycytidine; DNA; Humans; Isotope Labeling; Mixed Function Oxygenases; Nucleotidases; Reproducibility of Results; Swine; Tandem Mass Spectrometry; Thymus Gland

2016
A Novel method for the simultaneous identification of methylcytosine and hydroxymethylcytosine at a single base resolution.
    Nucleic acids research, 2017, 02-28, Volume: 45, Issue:4

    Topics: 5-Methylcytosine; Animals; DNA (Cytosine-5-)-Methyltransferase 1; Genome; Genomics; Humans; Mice; Mice, Inbred C57BL; RNA, Long Noncoding; Sequence Analysis, DNA

2017
Regulation of mRNA splicing by MeCP2 via epigenetic modifications in the brain.
    Scientific reports, 2017, 02-17, Volume: 7

    Topics: 5-Methylcytosine; Alternative Splicing; Animals; Brain; Cells, Cultured; Epigenesis, Genetic; HEK293 Cells; Histone Code; Humans; Methyl-CpG-Binding Protein 2; Mice; Neurons; Rats

2017
Overexpression of TET dioxygenases in seminomas associates with low levels of DNA methylation and hydroxymethylation.
    Molecular carcinogenesis, 2017, Volume: 56, Issue:8

    Topics: 5-Methylcytosine; Adult; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Gene Expression Regulation, Neoplastic; Humans; Male; Mixed Function Oxygenases; Proto-Oncogene Proteins; Seminoma; Testicular Neoplasms; Testis; Up-Regulation

2017
Epigenetic determinants of space radiation-induced cognitive dysfunction.
    Scientific reports, 2017, 02-21, Volume: 7

    Topics: 5-Methylcytosine; Adenosine Kinase; Animals; Behavior, Animal; Brain; Dioxygenases; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3A; DNA-Binding Proteins; Epigenomics; Hippocampus; Male; Mice; Mice, Inbred C57BL; Proto-Oncogene Proteins; Tubercidin; Whole-Body Irradiation

2017
Epigenetic regulation of RELN and GAD1 in the frontal cortex (FC) of autism spectrum disorder (ASD) subjects.
    International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience, 2017, Volume: 62

    Topics: 5-Methylcytosine; Adolescent; Adult; Analysis of Variance; Autism Spectrum Disorder; Cell Adhesion Molecules, Neuronal; Chromatin Immunoprecipitation; Cohort Studies; DNA (Cytosine-5-)-Methyltransferase 1; Epigenesis, Genetic; Extracellular Matrix Proteins; Female; Frontal Lobe; Glutamate Decarboxylase; Humans; Male; Methyl-CpG-Binding Protein 2; Nerve Tissue Proteins; Promoter Regions, Genetic; Protein Binding; Reelin Protein; RNA, Messenger; Serine Endopeptidases; Young Adult

2017
Increased 5-hydroxymethylcytosine and Ten-eleven Translocation Protein Expression in Ultraviolet B-irradiated HaCaT Cells.
    Chinese medical journal, 2017, 03-05, Volume: 130, Issue:5

    Topics: 5-Methylcytosine; Cell Line; DNA Methylation; Gene Expression; Humans; Proto-Oncogene Proteins; Ultraviolet Rays

2017
Hinokitiol induces DNA demethylation via DNMT1 and UHRF1 inhibition in colon cancer cells.
    BMC cell biology, 2017, 02-27, Volume: 18, Issue:1

    Topics: 5-Methylcytosine; CCAAT-Enhancer-Binding Proteins; Cell Line, Tumor; Cell Proliferation; Colonic Neoplasms; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; Gene Expression Regulation, Neoplastic; Humans; Mixed Function Oxygenases; Monoterpenes; Neoplasm Proteins; Proto-Oncogene Proteins; RNA, Messenger; Time Factors; Tropolone; Ubiquitin-Protein Ligases

2017
Ten-Eleven Translocation-2 (Tet2) Is Involved in Myogenic Differentiation of Skeletal Myoblast Cells in Vitro.
    Scientific reports, 2017, 03-08, Volume: 7

    Topics: 5-Methylcytosine; Animals; Ascorbic Acid; Cell Differentiation; Cell Line; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Gene Expression Regulation, Developmental; Gene Knockdown Techniques; Mice; Muscle Development; Myoblasts, Skeletal; Promoter Regions, Genetic; Proto-Oncogene Proteins

2017
A Knockin Reporter Allows Purification and Characterization of mDA Neurons from Heterogeneous Populations.
    Cell reports, 2017, 03-07, Volume: 18, Issue:10

    Topics: 5-Methylcytosine; Base Sequence; Cell Differentiation; Cell Line; Cell Separation; Dopaminergic Neurons; Enhancer Elements, Genetic; Gene Expression Profiling; Gene Knock-In Techniques; Genes, Reporter; Human Embryonic Stem Cells; Humans; Luminescent Proteins; Mesencephalon; Red Fluorescent Protein; Sequence Analysis, RNA; Transcription, Genetic; Tyrosine 3-Monooxygenase

2017
5-Hydroxymethylcytosine (5hmC) and Ten-eleven translocation 1-3 (TET1-3) proteins in the dorsal root ganglia of mouse: Expression and dynamic regulation in neuropathic pain.
    Somatosensory & motor research, 2017, Volume: 34, Issue:2

    Topics: 5-Methylcytosine; Animals; Dioxygenases; DNA-Binding Proteins; Epigenesis, Genetic; Ganglia, Spinal; Male; Mice; Mice, Inbred C57BL; Neuralgia; Proto-Oncogene Proteins

2017
Early pathogenesis during infectious bursal disease in susceptible chickens is associated with changes in B cell genomic methylation and loss of genome integrity.
    Developmental and comparative immunology, 2017, Volume: 73

    Topics: 5-Methylcytosine; Animals; B-Lymphocytes; Birnaviridae Infections; Chickens; DNA Methylation; Infectious bursal disease virus; Poultry Diseases

2017
TET3-mediated DNA oxidation promotes ATR-dependent DNA damage response.
    EMBO reports, 2017, Volume: 18, Issue:5

    Topics: 5-Methylcytosine; Animals; Ataxia Telangiectasia Mutated Proteins; Cell Death; Dioxygenases; DNA; DNA Damage; DNA Methylation; DNA Repair; DNA-Binding Proteins; Genome; Mice; Oxidation-Reduction; Proto-Oncogene Proteins

2017
Dynamics of 5-methylcytosine and 5-hydroxymethylcytosine during pronuclear development in equine zygotes produced by ICSI.
    Epigenetics & chromatin, 2017, Volume: 10

    Topics: 5-Methylcytosine; Animals; Cell Nucleus; DNA; DNA Methylation; Histones; Horses; Microscopy, Fluorescence; Oocytes; Sperm Injections, Intracytoplasmic; Zygote

2017
Combinatorial DNA methylation codes at repetitive elements.
    Genome research, 2017, Volume: 27, Issue:6

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cytosine; DNA Methylation; DNA Transposable Elements; Epigenesis, Genetic; Fibroblasts; Genome; Mice; Mouse Embryonic Stem Cells; Primary Cell Culture; Repetitive Sequences, Nucleic Acid; Thymine DNA Glycosylase

2017
Detection of 5-Methylcytosine in Specific Poly(A) RNAs by Bisulfite Sequencing.
    Methods in molecular biology (Clifton, N.J.), 2017, Volume: 1562

    Topics: 5-Methylcytosine; Computational Biology; Methylation; Polymerase Chain Reaction; RNA, Messenger; Sequence Analysis, RNA; Software

2017
Automated Chemical Solid-Phase Synthesis and Deprotection of 5-Hydroxymethylcytosine-Containing RNA.
    Methods in molecular biology (Clifton, N.J.), 2017, Volume: 1562

    Topics: 5-Methylcytosine; Epigenesis, Genetic; Methylation; RNA; Solid-Phase Synthesis Techniques

2017
Differential expression of ten-eleven translocation genes in endometrial cancers.
    Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine, 2017, Volume: 39, Issue:3

    Topics: 5-Methylcytosine; Aged; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Endometrial Neoplasms; Epigenesis, Genetic; Female; Gene Expression Regulation, Neoplastic; Humans; Kaplan-Meier Estimate; Middle Aged; Mixed Function Oxygenases; Prognosis; Proto-Oncogene Proteins

2017
Epigenetic Status of H19-Igf2 Imprinted Genes and Loss of 5-Hydroxymethylcytosine in the Brain of Cloned Goats.
    Cellular reprogramming, 2017, Volume: 19, Issue:3

    Topics: 5-Methylcytosine; Animals; Brain; Cloning, Organism; DNA Methylation; Female; Genomic Imprinting; Goats; Histones; Insulin-Like Growth Factor II; Male

2017
Ten-eleven translocation 1 functions as a mediator of SOD3 expression in human lung cancer A549 cells.
    Free radical research, 2017, Volume: 51, Issue:3

    Topics: 5-Methylcytosine; A549 Cells; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Humans; Lung Neoplasms; Mixed Function Oxygenases; Oxidation-Reduction; Proto-Oncogene Proteins; Superoxide Dismutase

2017
Aberrant gene-specific DNA methylation signature analysis in cervical cancer.
    Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine, 2017, Volume: 39, Issue:3

    Topics: 5-Methylcytosine; Aged; Biomarkers, Tumor; Carcinoma, Squamous Cell; DNA Methylation; Female; Genotype; High-Throughput Nucleotide Sequencing; Homeobox Protein Nkx-2.2; Homeodomain Proteins; Humans; Middle Aged; Neoplasm Proteins; Nuclear Proteins; Papillomaviridae; Promoter Regions, Genetic; Transcription Factors; Uterine Cervical Neoplasms

2017
Cytosine modifications modulate the chromatin architecture of transcriptional enhancers.
    Genome research, 2017, Volume: 27, Issue:6

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Chromatin; Dioxygenases; DNA (Cytosine-5-)-Methyltransferase 1; DNA Methylation; DNA-Binding Proteins; Embryonal Carcinoma Stem Cells; Enhancer Elements, Genetic; Epigenesis, Genetic; Hepatocyte Nuclear Factor 3-alpha; Histones; Mice; Myeloid Ecotropic Viral Integration Site 1 Protein; Neural Stem Cells; Pre-B-Cell Leukemia Transcription Factor 1; Protein Binding; Proto-Oncogene Proteins; RNA, Small Interfering; Transcription, Genetic; Tumor Cells, Cultured

2017
Increased 5-hydroxymethylation levels in the hippocampus of rat extinguished from cocaine self-administration.
    Hippocampus, 2017, Volume: 27, Issue:7

    Topics: 5-Methylcytosine; Animals; Cocaine-Related Disorders; Dioxygenases; DNA Methylation; Extinction, Psychological; Gene Expression Regulation; Hippocampus; Male; Rats; Rats, Wistar

2017
An Intrinsic Epigenetic Barrier for Functional Axon Regeneration.
    Neuron, 2017, Apr-19, Volume: 94, Issue:2

    Topics: 5-Methylcytosine; Animals; Axons; Epigenesis, Genetic; Ganglia, Spinal; Mice, Inbred C57BL; Nerve Regeneration; Peripheral Nerve Injuries

2017
Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA.
    Epigenetics & chromatin, 2017, Volume: 10

    Topics: 5-Methylcytosine; Brain; Cell Line, Tumor; CpG Islands; DNA; DNA Methylation; Gene Expression Profiling; Genome, Human; Humans; Immunoprecipitation; Mixed Function Oxygenases; Oligonucleotide Array Sequence Analysis; Oxidation-Reduction; Proto-Oncogene Proteins; Sequence Analysis, DNA; Sulfites; Whole Genome Sequencing

2017
DNA Methylation program in normal and alcohol-induced thinning cortex.
    Alcohol (Fayetteville, N.Y.), 2017, Volume: 60

    Topics: 5-Methylcytosine; Alcohol Drinking; Animals; DNA Methylation; Epigenesis, Genetic; Ethanol; Female; Fetal Alcohol Spectrum Disorders; Genotype; Gestational Age; Maternal Exposure; Mice, Inbred C57BL; Neocortex; Neurogenesis; Phenotype; Pregnancy

2017
Methyl-CpG binding domain protein 1 regulates localization and activity of Tet1 in a CXXC3 domain-dependent manner.
    Nucleic acids research, 2017, Jul-07, Volume: 45, Issue:12

    Topics: 5-Methylcytosine; Animals; Cell Line; CpG Islands; Dioxygenases; DNA; DNA-Binding Proteins; Gene Expression Regulation; Genes, Reporter; Green Fluorescent Proteins; HEK293 Cells; Heterochromatin; Humans; Luminescent Proteins; Mice; Mixed Function Oxygenases; Mouse Embryonic Stem Cells; Myoblasts; Oxidation-Reduction; Protein Domains; Proto-Oncogene Proteins; Red Fluorescent Protein; Signal Transduction; Transcription Factors

2017
Gene-body 5-hydroxymethylation is associated with gene expression changes in the prefrontal cortex of depressed individuals.
    Translational psychiatry, 2017, 05-09, Volume: 7, Issue:5

    Topics: 5-Methylcytosine; Adult; Autopsy; Depressive Disorder, Major; DNA Methylation; Epigenesis, Genetic; Gene Expression; Genome; Humans; Male; Middle Aged; Myosin Heavy Chains; Phenotype; Prefrontal Cortex; Suicide

2017
Effect of cadmium on cytosine hydroxymethylation in gastropod hepatopancreas.
    Environmental science and pollution research international, 2017, Volume: 24, Issue:17

    Topics: 5-Methylcytosine; Animals; Cadmium; Cytosine; Hepatopancreas; Humans; Snails; Water Pollutants, Chemical

2017
A sensitive signal-off electrogenerated chemiluminescence biosensing method for the discrimination of DNA hydroxymethylation based on glycosylation modification and signal quenching from ferroceneboronic acid.
    Talanta, 2017, Aug-01, Volume: 170

    Topics: 5-Methylcytosine; Biosensing Techniques; Boronic Acids; DNA; DNA Methylation; Electrochemical Techniques; Equipment Design; Ferrous Compounds; Fluorocarbon Polymers; Glycosylation; Gold; Humans; Limit of Detection; Luminescent Measurements; Metal Nanoparticles; Metallocenes

2017
DIRECTION: a machine learning framework for predicting and characterizing DNA methylation and hydroxymethylation in mammalian genomes.
    Bioinformatics (Oxford, England), 2017, Oct-01, Volume: 33, Issue:19

    Topics: 5-Methylcytosine; Algorithms; Animals; CpG Islands; DNA; DNA Methylation; Epigenesis, Genetic; Humans; Machine Learning; Mammals; Software

2017
Immunofluorescence Imaging Strategy for Evaluation of the Accessibility of DNA 5-Hydroxymethylcytosine in Chromatins.
    Analytical chemistry, 2017, 06-06, Volume: 89, Issue:11

    Topics: 5-Methylcytosine; Animals; Antibodies; Chromatin; DNA; Embryonic Stem Cells; Fluorescent Antibody Technique; Humans; MCF-7 Cells; Mice; Mixed Function Oxygenases; Molecular Imaging; Proto-Oncogene Proteins

2017
The level and clinical significance of 5-hydroxymethylcytosine in oral squamous cell carcinoma: An immunohistochemical study in 95 patients.
    Pathology, research and practice, 2017, Volume: 213, Issue:8

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Biomarkers, Tumor; Carcinoma, Squamous Cell; Disease-Free Survival; Female; Head and Neck Neoplasms; Humans; Immunohistochemistry; Kaplan-Meier Estimate; Male; Middle Aged; Mouth Neoplasms; Proportional Hazards Models; Retrospective Studies; Squamous Cell Carcinoma of Head and Neck

2017
Genome-wide alteration in DNA hydroxymethylation in the sperm from bisphenol A-exposed men.
    PloS one, 2017, Volume: 12, Issue:6

    Topics: 5-Methylcytosine; Adult; Air Pollutants, Occupational; Benzhydryl Compounds; DNA Methylation; DNA-Binding Proteins; Environmental Exposure; Epigenesis, Genetic; Estrogens, Non-Steroidal; Genome, Human; Histones; Homeodomain Proteins; Humans; Hydroxylation; Male; Middle Aged; MutL Protein Homolog 1; Phenols; Promoter Regions, Genetic; Protein Isoforms; Sperm Count; Spermatogenesis; Spermatozoa

2017
Molecular cloning of chicken TET family genes and role of chicken TET1 in erythropoiesis.
    Biochemical and biophysical research communications, 2017, 08-26, Volume: 490, Issue:3

    Topics: 5-Methylcytosine; Animals; beta-Globins; Cell Line; Chickens; Cloning, Molecular; Dioxygenases; DNA Methylation; Erythropoiesis; HeLa Cells; Humans; Multigene Family; Promoter Regions, Genetic

2017
Ten-eleven translocation 2 interacts with forkhead box O3 and regulates adult neurogenesis.
    Nature communications, 2017, 06-29, Volume: 8

    Topics: 5-Methylcytosine; Animals; Cell Proliferation; Cells, Cultured; Dioxygenases; DNA-Binding Proteins; Forkhead Box Protein O3; Gene Expression Regulation; Male; Mice, Knockout; Neural Stem Cells; Neurogenesis; Protein Binding; Proto-Oncogene Proteins

2017
MicroRNA-29a induces loss of 5-hydroxymethylcytosine and promotes metastasis of hepatocellular carcinoma through a TET-SOCS1-MMP9 signaling axis.
    Cell death & disease, 2017, 06-29, Volume: 8, Issue:6

    Topics: 5-Methylcytosine; Adult; Aged; Animals; Carcinoma, Hepatocellular; DNA Methylation; Epigenesis, Genetic; Female; Gene Expression Regulation, Neoplastic; Humans; Liver Neoplasms; Male; Matrix Metalloproteinase 9; Mice; MicroRNAs; Middle Aged; Mixed Function Oxygenases; Neoplasm Metastasis; Proto-Oncogene Proteins; Signal Transduction; Suppressor of Cytokine Signaling 1 Protein; Xenograft Model Antitumor Assays

2017
Profiling of oxBS-450K 5-hydroxymethylcytosine in human placenta and brain reveals enrichment at imprinted loci.
    Epigenetics, 2018, Volume: 13, Issue:2

    Topics: 5-Methylcytosine; Brain; DNA Methylation; Female; Genetic Loci; Genomic Imprinting; Humans; Placenta; Pregnancy; snRNP Core Proteins; Ubiquitin-Protein Ligases

2018
The protective role of TET2 in erythroid iron homeostasis against oxidative stress and erythropoiesis.
    Cellular signalling, 2017, Volume: 38

    Topics: 5-Methylcytosine; Animals; Cation Transport Proteins; Cytokines; Dioxygenases; DNA Demethylation; DNA-Binding Proteins; Erythroid Cells; Erythropoiesis; Hepcidins; Homeostasis; Humans; Iron; K562 Cells; Male; Mice, Inbred C57BL; Muscle Proteins; NF-E2-Related Factor 2; Oxidative Stress; Protective Agents; Proto-Oncogene Proteins; Stress, Physiological; Transcription, Genetic

2017
Synthesis, Thermodynamic Properties, and Crystal Structure of RNA Oligonucleotides Containing 5-Hydroxymethylcytosine.
    The Journal of organic chemistry, 2017, 08-04, Volume: 82, Issue:15

    Topics: 5-Methylcytosine; Carbohydrate Conformation; Crystallography, X-Ray; Models, Molecular; Oligonucleotides; RNA; Thermodynamics

2017
Single-molecule quantification of 5-hydroxymethylcytosine for diagnosis of blood and colon cancers.
    Clinical epigenetics, 2017, Volume: 9

    Topics: 5-Methylcytosine; Colonic Neoplasms; DNA, Neoplasm; Epigenesis, Genetic; Hematologic Neoplasms; Humans; Microscopy, Fluorescence; Sensitivity and Specificity; Single Molecule Imaging

2017
Biological significance of 5-hydroxymethylcytosine in oral epithelial dysplasia and oral squamous cell carcinoma.
    Oral surgery, oral medicine, oral pathology and oral radiology, 2018, Volume: 125, Issue:1

    Topics: 5-Methylcytosine; Animals; Biomarkers, Tumor; Carcinoma, Squamous Cell; Cells, Cultured; Disease Models, Animal; DNA Methylation; Early Diagnosis; Fibroma; Humans; Immunoblotting; Immunoenzyme Techniques; Keratinocytes; Lichen Planus, Oral; Mice; Mouth Neoplasms; Precancerous Conditions; Prognosis

2018
5-hydroxymethylcytosine in DNA repair: A new player or a red herring?
    Cell cycle (Georgetown, Tex.), 2017, Aug-18, Volume: 16, Issue:16

    Topics: 5-Methylcytosine; Animals; DNA Damage; DNA Demethylation; DNA Repair; Humans

2017
Altered Global 5-Hydroxymethylation Status in Hidradenitis Suppurativa: Support for an Epigenetic Background.
    Dermatology (Basel, Switzerland), 2017, Volume: 233, Issue:2-3

    Topics: 5-Methylcytosine; Case-Control Studies; DNA Methylation; Epigenesis, Genetic; Female; Hidradenitis Suppurativa; Humans; Immunohistochemistry; Male; Skin

2017
5-Hydroxymethylcytosine signatures in cell-free DNA provide information about tumor types and stages.
    Cell research, 2017, Volume: 27, Issue:10

    Topics: 5-Methylcytosine; Adult; Aged; Animals; Cell-Free Nucleic Acids; Circulating Tumor DNA; Cytosine; DNA Methylation; Epigenesis, Genetic; Female; Humans; Male; Middle Aged; Neoplasm Staging; Neoplasms

2017
Evaluation of Post-Mortem Effects on Global Brain DNA Methylation and Hydroxymethylation.
    Basic & clinical pharmacology & toxicology, 2018, Volume: 122, Issue:2

    Topics: 5-Methylcytosine; Age Factors; Animals; Animals, Newborn; Autopsy; Cerebellum; DNA Damage; DNA Methylation; Humans; Oxidative Stress; Postmortem Changes; Rats; Rats, Wistar; Reactive Oxygen Species; Time Factors

2018
Variation in global DNA hydroxymethylation with age associated with schizophrenia.
    Psychiatry research, 2017, Volume: 257

    Topics: 5-Methylcytosine; Adult; Age Factors; Case-Control Studies; DNA; DNA Methylation; Female; Humans; Male; Schizophrenia; Sex Factors

2017
5-hydroxymethylcytosine accumulation in postmitotic neurons results in functional demethylation of expressed genes.
    Proceedings of the National Academy of Sciences of the United States of America, 2017, 09-12, Volume: 114, Issue:37

    Topics: 5-Methylcytosine; Animals; Cytosine; Demethylation; DNA Methylation; Epigenesis, Genetic; Gene Expression; Methyl-CpG-Binding Protein 2; Mice; Mitosis; Neurons; Promoter Regions, Genetic

2017
Ultrasensitive electrochemiluminescence immunosensor for 5-hydroxymethylcytosine detection based on Fe
    Biosensors & bioelectronics, 2018, Jan-15, Volume: 99

    Topics: 5-Methylcytosine; Biosensing Techniques; Dendrimers; Ferric Compounds; Humans; Metal Nanoparticles; Silicon Dioxide

2018
Bi-directional and shared epigenomic signatures following proton and
    Scientific reports, 2017, 08-31, Volume: 7, Issue:1

    Topics: 5-Methylcytosine; Animals; DNA Methylation; Epigenomics; Gene Expression Profiling; Gene Expression Regulation; Gene Regulatory Networks; Hippocampus; Male; Maze Learning; Mice; Protons; Sequence Analysis, RNA; Spatial Learning; Time Factors; Whole-Body Irradiation

2017
Single-Base Resolution Mapping of 5-Hydroxymethylcytosine Modifications in Hippocampus of Alzheimer's Disease Subjects.
    Journal of molecular neuroscience : MN, 2017, Volume: 63, Issue:2

    Topics: 5-Methylcytosine; Aged, 80 and over; Alzheimer Disease; Case-Control Studies; DNA Methylation; Epigenesis, Genetic; Female; Hippocampus; Humans; Male

2017
5-hydroxymethylcytosine is highly dynamic across human fetal brain development.
    BMC genomics, 2017, Sep-18, Volume: 18, Issue:1

    Topics: 5-Methylcytosine; Brain; Fetus; Humans; Quantitative Trait Loci; Sex Characteristics; Time Factors

2017
5-Hydroxymethylcytosine signatures in circulating cell-free DNA as diagnostic biomarkers for human cancers.
    Cell research, 2017, Volume: 27, Issue:10

    Topics: 5-Methylcytosine; Adolescent; Adult; Aged; Biomarkers, Tumor; Cell-Free Nucleic Acids; Circulating Tumor DNA; DNA Methylation; Epigenomics; Female; Gene Expression Regulation, Neoplastic; Humans; Liquid Biopsy; Male; Middle Aged; Neoplasms; Young Adult

2017
Tet-mediated DNA hydroxymethylation regulates retinal neurogenesis by modulating cell-extrinsic signaling pathways.
    PLoS genetics, 2017, Volume: 13, Issue:9

    Topics: 5-Methylcytosine; Animals; Axons; Cell Differentiation; Dioxygenases; DNA Methylation; Neurogenesis; Neurons; Receptors, Notch; Retina; Transcriptome; Wnt Signaling Pathway; Zebrafish; Zebrafish Proteins

2017
Mouse olfactory bulb methylome and hydroxymethylome maps reveal noncanonical active turnover of DNA methylation.
    Epigenetics, 2017, Volume: 12, Issue:8

    Topics: 5-Methylcytosine; Animals; CpG Islands; DNA Methylation; Female; Genome; Mice; Mice, Inbred C57BL; Olfactory Bulb; Whole Genome Sequencing

2017
TET2- and TDG-mediated changes are required for the acquisition of distinct histone modifications in divergent terminal differentiation of myeloid cells.
    Nucleic acids research, 2017, Sep-29, Volume: 45, Issue:17

    Topics: 5-Methylcytosine; Cell Differentiation; Cell Lineage; Dioxygenases; DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression Profiling; Histone-Lysine N-Methyltransferase; Histones; Humans; Macrophage Colony-Stimulating Factor; Macrophages; Osteoclasts; Primary Cell Culture; Proto-Oncogene Proteins; RANK Ligand; Thymine DNA Glycosylase; Transcriptome

2017
Functional impacts of 5-hydroxymethylcytosine, 5-formylcytosine, and 5-carboxycytosine at a single hemi-modified CpG dinucleotide in a gene promoter.
    Nucleic acids research, 2017, Nov-02, Volume: 45, Issue:19

    Topics: 5-Methylcytosine; Animals; Base Sequence; CpG Islands; Cyclic AMP Response Element-Binding Protein; Cytosine; DNA; DNA Methylation; Gene Expression Regulation; Humans; Promoter Regions, Genetic; Protein Binding; Thymine DNA Glycosylase

2017
Altered hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways.
    Genome research, 2017, Volume: 27, Issue:11

    Topics: 5-Methylcytosine; Animals; Cell Line, Tumor; Epigenesis, Genetic; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; Gene Regulatory Networks; Genome-Wide Association Study; Histones; Humans; Mice; Neoplasm Transplantation; Pancreatic Neoplasms; Patient-Specific Modeling; Regulatory Sequences, Nucleic Acid; Sequence Analysis, RNA

2017
Erasure of Tet-Oxidized 5-Methylcytosine by a SRAP Nuclease.
    Cell reports, 2017, Oct-10, Volume: 21, Issue:2

    Topics: 5-Methylcytosine; Animals; Cells, Cultured; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Female; Male; Mice; Mice, Inbred C57BL; Protein Binding

2017
Deciphering TAL effectors for 5-methylcytosine and 5-hydroxymethylcytosine recognition.
    Nature communications, 2017, 10-12, Volume: 8, Issue:1

    Topics: 5-Methylcytosine; Base Sequence; DNA; Epigenesis, Genetic; HEK293 Cells; HeLa Cells; Humans; Molecular Structure; Protein Binding; Repetitive Sequences, Amino Acid; Transcription Activator-Like Effectors

2017
Alterations in the placental methylome with maternal obesity and evidence for metabolic regulation.
    PloS one, 2017, Volume: 12, Issue:10

    Topics: 5-Methylcytosine; Adiposity; Body Mass Index; DNA Methylation; Epigenesis, Genetic; Female; Genome, Human; Humans; Metabolome; Multigene Family; Obesity; Placenta; Pregnancy; Thinness

2017
DNA methylation and hydroxymethylation analyses of the active LINE-1 subfamilies in mice.
    Scientific reports, 2017, 10-19, Volume: 7, Issue:1

    Topics: 5-Methylcytosine; 5' Untranslated Regions; Animals; Base Sequence; Brain; DNA Methylation; Female; Long Interspersed Nucleotide Elements; Male; Mice; Mice, Inbred C57BL; Myocardium; Ovary; Sequence Analysis, DNA; Testis

2017
DNA N6-methyladenine is dynamically regulated in the mouse brain following environmental stress.
    Nature communications, 2017, 10-24, Volume: 8, Issue:1

    Topics: 5-Methylcytosine; Adenine; Animals; Brain; Computational Biology; Depression; Disease Models, Animal; DNA; DNA Methylation; Epigenesis, Genetic; Gene Expression Profiling; Genome; Humans; Long Interspersed Nucleotide Elements; Male; Mental Disorders; Mice; Mice, Inbred C57BL; Neurons; Prefrontal Cortex; Stress, Physiological; Swimming; Transcriptome

2017
DNA Hydroxymethylation Levels Are Altered in Blood Cells From Down Syndrome Persons Enrolled in the MARK-AGE Project.
    The journals of gerontology. Series A, Biological sciences and medical sciences, 2018, 05-09, Volume: 73, Issue:6

    Topics: 5-Methylcytosine; Adult; Aged; Aging; Cross-Sectional Studies; DNA Methylation; Down Syndrome; Epigenesis, Genetic; Europe; Female; Humans; Immunoblotting; Italy; Leukocytes, Mononuclear; Male; Middle Aged; Mixed Function Oxygenases; Proto-Oncogene Proteins; RNA, Messenger

2018
Decrease in Lymphoid Specific Helicase and 5-hydroxymethylcytosine Is Associated with Metastasis and Genome Instability.
    Theranostics, 2017, Volume: 7, Issue:16

    Topics: 5-Methylcytosine; Animals; Cell Line, Tumor; Cisplatin; Dioxygenases; DNA Helicases; DNA-Binding Proteins; Drug Resistance, Neoplasm; Gene Expression Regulation, Neoplastic; Genomic Instability; Heterochromatin; Humans; Mice, Nude; MicroRNAs; Neoplasm Metastasis; Protein Binding; Proto-Oncogene Proteins

2017
Clinical Significance of Measuring Global Hydroxymethylation of White Blood Cell DNA in Prostate Cancer: Comparison to PSA in a Pilot Exploratory Study.
    International journal of molecular sciences, 2017, Nov-20, Volume: 18, Issue:11

    Topics: 5-Methylcytosine; Aged; Biomarkers, Tumor; DNA Methylation; DNA, Neoplasm; Epigenesis, Genetic; Humans; Leukocytes; Male; Middle Aged; Prostate-Specific Antigen; Prostatic Hyperplasia; Prostatic Neoplasms

2017
Selective inhibition of CTCF binding by iAs directs TET-mediated reprogramming of 5-hydroxymethylation patterns in iAs-transformed cells.
    Toxicology and applied pharmacology, 2018, 01-01, Volume: 338

    Topics: 5-Methylcytosine; Arsenic; CCCTC-Binding Factor; Cell Transformation, Neoplastic; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Humans; Mixed Function Oxygenases; Promoter Regions, Genetic; Proto-Oncogene Proteins

2018
Oxygen gradients can determine epigenetic asymmetry and cellular differentiation via differential regulation of Tet activity in embryonic stem cells.
    Nucleic acids research, 2018, 02-16, Volume: 46, Issue:3

    Topics: 5-Methylcytosine; Amino Acids, Dicarboxylic; Animals; Cell Differentiation; Cell Hypoxia; Cell Line; Demethylation; Dioxygenases; Embryoid Bodies; Epigenesis, Genetic; Gene Expression Regulation, Developmental; HEK293 Cells; Histones; Humans; Hydroxylation; Mice; Mixed Function Oxygenases; Models, Biological; Mouse Embryonic Stem Cells; Oxygen; Promoter Regions, Genetic; Protein Isoforms; Proto-Oncogene Proteins

2018
Integrating 5hmC and gene expression data to infer regulatory mechanisms.
    Bioinformatics (Oxford, England), 2018, 05-01, Volume: 34, Issue:9

    Topics: 5-Methylcytosine; Cell Line, Tumor; Computational Biology; Epigenesis, Genetic; Female; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; Humans; Sequence Analysis, DNA; Sequence Analysis, RNA; Triple Negative Breast Neoplasms

2018
Cortex and hippocampus DNA epigenetic response to a long-term arsenic exposure via drinking water.
    Environmental pollution (Barking, Essex : 1987), 2018, Volume: 234

    Topics: 5-Methylcytosine; Animals; Arsenic; Arsenic Trioxide; Arsenicals; Cerebral Cortex; DNA Methylation; DNA Modification Methylases; Drinking Water; Epigenesis, Genetic; Hippocampus; Learning; Male; Oxidative Stress; Oxides; Rats, Sprague-Dawley; Water Pollutants, Chemical

2018
Quantification of Global DNA Methylation Levels by Mass Spectrometry.
    Methods in molecular biology (Clifton, N.J.), 2018, Volume: 1708

    Topics: 5-Methylcytosine; Animals; Chromatography, Liquid; DNA Methylation; Epigenesis, Genetic; Humans; Nanotechnology; Plants; Tandem Mass Spectrometry

2018
Tet-Assisted Bisulfite Sequencing (TAB-seq).
    Methods in molecular biology (Clifton, N.J.), 2018, Volume: 1708

    Topics: 5-Methylcytosine; Animals; Cells, Cultured; DNA-Binding Proteins; Epigenomics; Glucosyltransferases; Humans; Mice; Proto-Oncogene Proteins; Recombinant Proteins; Sequence Analysis, DNA; Sulfites

2018
Multiplexing for Oxidative Bisulfite Sequencing (oxBS-seq).
    Methods in molecular biology (Clifton, N.J.), 2018, Volume: 1708

    Topics: 5-Methylcytosine; DNA Methylation; Genomic Library; Humans; Organ Specificity; Sequence Analysis, DNA; Sulfites; Workflow

2018
Affinity-Based Enrichment Techniques for the Genome-Wide Analysis of 5-Hydroxymethylcytosine.
    Methods in molecular biology (Clifton, N.J.), 2018, Volume: 1708

    Topics: 5-Methylcytosine; Animals; CpG Islands; DNA Methylation; Epigenesis, Genetic; Humans; Vertebrates; Whole Genome Sequencing

2018
cAMP signaling regulates DNA hydroxymethylation by augmenting the intracellular labile ferrous iron pool.
    eLife, 2017, 12-14, Volume: 6

    Topics: 5-Methylcytosine; Animals; Cells, Cultured; Cyclic AMP; DNA; Gene Expression Regulation; Iron; Methylation; Rats; Schwann Cells; Signal Transduction

2017
Loss of 5-hydroxymethylcytosine is a frequent event in peripheral T-cell lymphomas.
    Haematologica, 2018, Volume: 103, Issue:3

    Topics: 5-Methylcytosine; Epigenesis, Genetic; Humans; Lymphoma, T-Cell, Peripheral; Methylation

2018
Bacteriophage DNA glucosylation impairs target DNA binding by type I and II but not by type V CRISPR-Cas effector complexes.
    Nucleic acids research, 2018, 01-25, Volume: 46, Issue:2

    Topics: 5-Methylcytosine; Bacteriophage T4; Base Sequence; CRISPR-Associated Protein 9; CRISPR-Cas Systems; DNA, Viral; Escherichia coli; Protein Binding; T-Phages

2018
Epigenetic Reprogramming Strategies to Reverse Global Loss of 5-Hydroxymethylcytosine, a Prognostic Factor for Poor Survival in High-grade Serous Ovarian Cancer.
    Clinical cancer research : an official journal of the American Association for Cancer Research, 2018, 03-15, Volume: 24, Issue:6

    Topics: 5-Methylcytosine; Animals; Cell Survival; Cellular Reprogramming; Combined Modality Therapy; Cystadenocarcinoma, Serous; Dioxygenases; Disease Models, Animal; Disease Progression; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Female; Gene Expression Regulation, Neoplastic; Humans; Mice; Neoplasm Grading; Ovarian Neoplasms; Prognosis; Proto-Oncogene Proteins; Recurrence; Survival Analysis; Xenograft Model Antitumor Assays

2018
Understanding the influence of antipsychotic drugs on global methylation events and its relevance in treatment response.
    Epigenomics, 2018, Volume: 10, Issue:3

    Topics: 5-Methylcytosine; Adult; Antipsychotic Agents; Case-Control Studies; Clozapine; Cytosine; DNA; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3A; Epigenesis, Genetic; Female; Haloperidol; Hep G2 Cells; Humans; Male; MicroRNAs; Olanzapine; Pharmacogenetics; Schizophrenia; Treatment Outcome

2018
Copper induces expression and methylation changes of early development genes in Crassostrea gigas embryos.
    Aquatic toxicology (Amsterdam, Netherlands), 2018, Volume: 196

    Topics: 5-Methylcytosine; Animals; Comet Assay; Copper; Crassostrea; DNA Methylation; Embryo, Nonmammalian; Gene Expression; Homeodomain Proteins; Larva; Principal Component Analysis; Real-Time Polymerase Chain Reaction; RNA; Water Pollutants, Chemical

2018
Detecting TF-miRNA-gene network based modules for 5hmC and 5mC brain samples: a intra- and inter-species case-study between human and rhesus.
    BMC genetics, 2018, 01-22, Volume: 19, Issue:1

    Topics: 5-Methylcytosine; Animals; Brain; DNA Methylation; Gene Regulatory Networks; Humans; Macaca mulatta; Species Specificity

2018
Tet2 promotes pathogen infection-induced myelopoiesis through mRNA oxidation.
    Nature, 2018, 02-01, Volume: 554, Issue:7690

    Topics: 3' Untranslated Regions; 5-Methylcytosine; Adenosine Deaminase; Animals; Bone Marrow Cells; Dioxygenases; DNA-Binding Proteins; Epigenesis, Genetic; Female; Gene Expression Regulation; Immunity, Innate; Mice; Myelopoiesis; Nucleic Acid Conformation; Oxidation-Reduction; Proto-Oncogene Proteins; RNA, Double-Stranded; RNA, Messenger; Sepsis; Suppressor of Cytokine Signaling 3 Protein; Transcriptome

2018
Novel insights into mitochondrial molecular targets of iron-induced neurodegeneration: Reversal by cannabidiol.
    Brain research bulletin, 2018, Volume: 139

    Topics: 5-Methylcytosine; Animals; Animals, Newborn; Cannabidiol; Creatine Kinase; Disease Models, Animal; DNA Methylation; DNA, Mitochondrial; Female; Gene Expression Regulation; Hippocampus; Iron Carbonyl Compounds; Male; Mitochondria; Mitochondrial Proteins; Muscle Proteins; NADH Dehydrogenase; Neurodegenerative Diseases; Pregnancy; Rats; Rats, Wistar

2018
Sulfinate Based Selective Labeling of 5-Hydroxymethylcytosine: Application to Biotin Pull Down Assay.
    Bioconjugate chemistry, 2018, 02-21, Volume: 29, Issue:2

    Topics: 5-Methylcytosine; Biotin; Biotinylation; DNA; Sulfinic Acids; Sulfites

2018
Decoding the dynamic DNA methylation and hydroxymethylation landscapes in endodermal lineage intermediates during pancreatic differentiation of hESC.
    Nucleic acids research, 2018, 04-06, Volume: 46, Issue:6

    Topics: 5-Methylcytosine; Cell Differentiation; Cell Line; Cell Lineage; DNA Methylation; Endoderm; Epigenesis, Genetic; Epigenomics; Gene Expression Regulation, Developmental; Human Embryonic Stem Cells; Humans; Pancreas

2018
DNA redox modulations and global DNA methylation in bipolar disorder: Effects of sex, smoking and illness state.
    Psychiatry research, 2018, Volume: 261

    Topics: 5-Methylcytosine; Adult; Bipolar Disorder; DNA Methylation; Female; Humans; Male; Middle Aged; Oxidation-Reduction; Sex Factors; Smoking

2018
Genomic 5-mC contents in peripheral blood leukocytes were independent protective factors for coronary artery disease with a specific profile in different leukocyte subtypes.
    Clinical epigenetics, 2018, Volume: 10

    Topics: 5-Methylcytosine; Aged; Case-Control Studies; Cholesterol; Chromatography, Liquid; Coronary Artery Disease; Cross-Sectional Studies; DNA (Cytosine-5-)-Methyltransferase 1; DNA Methylation; Down-Regulation; Female; Genome-Wide Association Study; Humans; Leukocytes, Mononuclear; Male; Middle Aged; Protective Factors; Spectrometry, Mass, Electrospray Ionization; Tandem Mass Spectrometry; THP-1 Cells; Tissue Distribution

2018
Impaired fear extinction in serotonin transporter knockout rats is associated with increased 5-hydroxymethylcytosine in the amygdala.
    CNS neuroscience & therapeutics, 2018, Volume: 24, Issue:9

    Topics: 5-Methylcytosine; Amygdala; Animals; DNA Methylation; Extinction, Psychological; Fear; Male; Rats; Rats, Wistar; Serotonin Plasma Membrane Transport Proteins

2018
5-Hydroxymethylcytosine preferentially targets genes upregulated in isocitrate dehydrogenase 1 mutant high-grade glioma.
    Acta neuropathologica, 2018, Volume: 135, Issue:4

    Topics: 5-Methylcytosine; Adult; Aged; Brain Neoplasms; Cohort Studies; DNA Methylation; Female; Gene Expression Regulation, Neoplastic; Glioma; Humans; Isocitrate Dehydrogenase; Male; Middle Aged; Neoplasm Grading; RNA, Messenger; Up-Regulation

2018
A cross-omics approach to investigate temporal gene expression regulation by 5-hydroxymethylcytosine via TBH-derived oxidative stress showed involvement of different regulatory kinases.
    Toxicology in vitro : an international journal published in association with BIBRA, 2018, Volume: 48

    Topics: 5-Methylcytosine; Animals; Gene Expression Regulation; Gene Regulatory Networks; Genomics; Hep G2 Cells; Humans; Liver Neoplasms, Experimental; Metabolome; Microarray Analysis; Oxidative Stress; Protein Kinases; RNA; tert-Butylhydroperoxide

2018
Tet2 Rescues Age-Related Regenerative Decline and Enhances Cognitive Function in the Adult Mouse Brain.
    Cell reports, 2018, 02-20, Volume: 22, Issue:8

    Topics: 5-Methylcytosine; Aging; Animals; Brain; Cognition; Dentate Gyrus; Dioxygenases; DNA-Binding Proteins; Male; Mice, Inbred C57BL; Models, Animal; Nerve Regeneration; Neural Stem Cells; Neurogenesis; Parabiosis; Proto-Oncogene Proteins

2018
Circulating tumor DNA 5-hydroxymethylcytosine as a novel diagnostic biomarker for esophageal cancer.
    Cell research, 2018, Volume: 28, Issue:5

    Topics: 5-Methylcytosine; Biomarkers, Tumor; Circulating Tumor DNA; Esophageal Neoplasms; Gene Expression Regulation, Neoplastic; Humans; Neoplasm Staging

2018
Peroxiredoxin as a functional endogenous antioxidant enzyme in pronuclei of mouse zygotes.
    The Journal of reproduction and development, 2018, Apr-13, Volume: 64, Issue:2

    Topics: 5-Methylcytosine; Active Transport, Cell Nucleus; Animals; Cell Nucleus; Cells, Cultured; Cumulus Cells; DNA Methylation; Ectogenesis; Epigenesis, Genetic; Female; Fertilization in Vitro; Hydrogen Peroxide; Male; Mice, Inbred ICR; Microscopy, Confocal; Oxidants; Oxidative Stress; Peroxiredoxins; Proteomics; Reactive Oxygen Species; Zygote

2018
Integrated analyses of multi-omics reveal global patterns of methylation and hydroxymethylation and screen the tumor suppressive roles of HADHB in colorectal cancer.
    Clinical epigenetics, 2018, Volume: 10

    Topics: 5-Methylcytosine; Cell Line, Tumor; Cell Movement; Colorectal Neoplasms; DNA Methylation; Down-Regulation; Epigenesis, Genetic; Epigenomics; Female; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; HT29 Cells; Humans; Male; Mitochondrial Trifunctional Protein, beta Subunit; Sequence Analysis, DNA; Sequence Analysis, RNA

2018
Epigenetic reprogramming enables the transition from primordial germ cell to gonocyte.
    Nature, 2018, 03-15, Volume: 555, Issue:7696

    Topics: 5-Methylcytosine; Animals; Cellular Reprogramming; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Female; Gametogenesis; Germ Cells; Male; Meiosis; Mice; Proto-Oncogene Proteins

2018
DNA hydroxymethylation of colorectal primary carcinoma and its association with survival.
    Journal of surgical oncology, 2018, Volume: 117, Issue:5

    Topics: 5-Methylcytosine; Adenocarcinoma; Adenocarcinoma, Mucinous; Biomarkers, Tumor; Colorectal Neoplasms; DNA Methylation; Female; Follow-Up Studies; Gene Expression Regulation, Neoplastic; Humans; Liver Neoplasms; Male; Middle Aged; Prognosis; Survival Rate

2018
Ten-eleven Translocation-2 Regulates DNA Hydroxymethylation Status and Psoriasiform Dermatitis Progression in Mice.
    Acta dermato-venereologica, 2018, Jun-08, Volume: 98, Issue:6

    Topics: 5-Methylcytosine; Aminoquinolines; Animals; Case-Control Studies; Cell Differentiation; Cell Proliferation; Chemokine CXCL1; Dioxygenases; Disease Models, Animal; Disease Progression; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Female; Humans; Imiquimod; Interferon-gamma; Interleukin-17; Mice, Inbred BALB C; Proto-Oncogene Proteins; Psoriasis; Skin; Time Factors

2018
Vitamin C promotes apoptosis in breast cancer cells by increasing TRAIL expression.
    Scientific reports, 2018, 03-28, Volume: 8, Issue:1

    Topics: 5-Methylcytosine; Apoptosis; Ascorbic Acid; Breast Neoplasms; Cell Line, Tumor; Cell Survival; Female; Gene Expression Regulation, Neoplastic; Humans; MCF-7 Cells; Receptors, TNF-Related Apoptosis-Inducing Ligand; Sodium-Coupled Vitamin C Transporters; TNF-Related Apoptosis-Inducing Ligand

2018
Ischemia-Induced DNA Hypermethylation during Kidney Transplant Predicts Chronic Allograft Injury.
    Journal of the American Society of Nephrology : JASN, 2018, Volume: 29, Issue:5

    Topics: 5-Methylcytosine; Adult; Aged; Allografts; Cold Ischemia; CpG Islands; Cross-Sectional Studies; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Female; Fibrosis; Gene Expression; Glomerulosclerosis, Focal Segmental; Humans; Ischemia; Kidney Transplantation; Longitudinal Studies; Male; Middle Aged; Mixed Function Oxygenases; Postoperative Period; Predictive Value of Tests; Preoperative Period; Proto-Oncogene Proteins

2018
Electrochemical signal-amplified detection of 5-methylcytosine and 5-hydroxymethylcytosine in DNA using glucose modification coupled with restriction endonucleases.
    The Analyst, 2018, Apr-30, Volume: 143, Issue:9

    Topics: 5-Methylcytosine; Cytosine; DNA; DNA Methylation; DNA Restriction Enzymes; Electrochemical Techniques; Electrodes; Glucose; Gold; Humans; Nucleic Acid Hybridization

2018
Ten-eleven translocation 1 regulates methylation of autophagy-related genes in human glioma.
    Neuroreport, 2018, 06-13, Volume: 29, Issue:9

    Topics: 5-Methylcytosine; Autophagy; Brain; Brain Neoplasms; Cell Line, Tumor; DNA Methylation; Glioma; Humans; Mixed Function Oxygenases; Neoplasm Grading; Proto-Oncogene Proteins

2018
Quantification of DNA methylation and hydroxymethylation in Alzheimer's disease mouse model using LC-MS/MS.
    Journal of mass spectrometry : JMS, 2018, Volume: 53, Issue:7

    Topics: 5-Methylcytosine; Alzheimer Disease; Animals; Biomarkers; Chromatography, High Pressure Liquid; DNA; DNA Methylation; Mice, Inbred C57BL; Tandem Mass Spectrometry

2018
PML Recruits TET2 to Regulate DNA Modification and Cell Proliferation in Response to Chemotherapeutic Agent.
    Cancer research, 2018, 05-15, Volume: 78, Issue:10

    Topics: 5-Methylcytosine; Animals; Antineoplastic Agents; Basic Helix-Loop-Helix Transcription Factors; Cell Line, Tumor; Cell Proliferation; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Doxorubicin; Drug Resistance, Neoplasm; Head and Neck Neoplasms; HEK293 Cells; Humans; Leukemia, Promyelocytic, Acute; Mice; Mice, Inbred NOD; Mice, SCID; Promyelocytic Leukemia Protein; Proto-Oncogene Proteins; Retinoic Acid Receptor alpha; RNA Interference; RNA, Small Interfering; Xenograft Model Antitumor Assays

2018
Selective modulation of local linkages between active transcription and oxidative demethylation activity shapes cardiomyocyte-specific gene-body epigenetic status in mice.
    BMC genomics, 2018, May-10, Volume: 19, Issue:1

    Topics: 5-Methylcytosine; Animals; Cell Lineage; Demethylation; DNA Methylation; Embryonic Stem Cells; Epigenesis, Genetic; Female; Genes, Essential; Genetic Linkage; Liver; Male; Mice, Inbred C57BL; Myocytes, Cardiac; Transcription, Genetic

2018
5-Hydroxymethylcytosine alterations in the human postmortem brains of autism spectrum disorder.
    Human molecular genetics, 2018, 09-01, Volume: 27, Issue:17

    Topics: 5-Methylcytosine; Adolescent; Adult; Autism Spectrum Disorder; Autopsy; Case-Control Studies; DNA Methylation; Epigenesis, Genetic; Female; Humans; Male; Young Adult

2018
Overexpression of Tet3 in donor cells enhances goat somatic cell nuclear transfer efficiency.
    The FEBS journal, 2018, Volume: 285, Issue:14

    Topics: 5-Methylcytosine; Animals; Blastocyst; Cellular Reprogramming; Cloning, Organism; Dioxygenases; DNA Demethylation; Embryonic Development; Female; Gene Expression Regulation, Developmental; Goats; Male; Nanog Homeobox Protein; Nuclear Transfer Techniques; Octamer Transcription Factor-3; Pregnancy

2018
Loss of 5-Hydroxymethylcytosine Is an Epigenetic Biomarker in Cutaneous T-Cell Lymphoma.
    The Journal of investigative dermatology, 2018, Volume: 138, Issue:11

    Topics: 5-Methylcytosine; Apoptosis; Biomarkers, Tumor; Carcinogenesis; CD4-Positive T-Lymphocytes; Cell Line, Tumor; Disease Progression; Epigenesis, Genetic; Female; Humans; Keratinocytes; Lymphoma, T-Cell, Cutaneous; Male; Mycosis Fungoides; Neoplasm Staging; Prognosis; Skin Neoplasms; Survival Analysis

2018
Loss of 5hmC identifies a new type of aberrant DNA hypermethylation in glioma.
    Human molecular genetics, 2018, 09-01, Volume: 27, Issue:17

    Topics: 5-Methylcytosine; Biomarkers, Tumor; Case-Control Studies; CpG Islands; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Genome, Human; Glioma; Humans

2018
Association of high 5-hydroxymethylcytosine levels with Ten Eleven Translocation 2 overexpression and inflammation in Sjögren's syndrome patients.
    Clinical immunology (Orlando, Fla.), 2018, Volume: 196

    Topics: 5-Methylcytosine; Adult; Aged; Cytidine Deaminase; Cytokines; Dioxygenases; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3A; DNA Methyltransferase 3B; DNA-Binding Proteins; Epigenesis, Genetic; Female; Gene Expression; Gene Expression Regulation; Humans; Inflammation; Lip; Male; Methyl-CpG-Binding Protein 2; Middle Aged; Mixed Function Oxygenases; Promoter Regions, Genetic; Proto-Oncogene Proteins; Real-Time Polymerase Chain Reaction; Salivary Glands, Minor; Sjogren's Syndrome; Young Adult

2018
Protected 2'-deoxyribonucleoside triphosphate building blocks for the photocaging of epigenetic 5-(hydroxymethyl)cytosine in DNA.
    Organic & biomolecular chemistry, 2018, 08-01, Volume: 16, Issue:30

    Topics: 5-Methylcytosine; Deoxyribonucleosides; DNA; Light; Photochemical Processes; Polyphosphates; Ultraviolet Rays

2018
Tet2 Regulates Osteoclast Differentiation by Interacting with Runx1 and Maintaining Genomic 5-Hydroxymethylcytosine (5hmC).
    Genomics, proteomics & bioinformatics, 2018, Volume: 16, Issue:3

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cells, Cultured; Core Binding Factor Alpha 2 Subunit; Dioxygenases; DNA-Binding Proteins; Genome; Genomics; Mice; Mice, Knockout; Osteoclasts; Proto-Oncogene Proteins

2018
Two are better than one: HPoxBS - hairpin oxidative bisulfite sequencing.
    Nucleic acids research, 2018, 09-06, Volume: 46, Issue:15

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; DNA (Cytosine-5-)-Methyltransferase 1; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Regulation; High-Throughput Nucleotide Sequencing; Mice; Oxidation-Reduction; Proto-Oncogene Proteins; Sulfites

2018
Epigenetic Optical Mapping of 5-Hydroxymethylcytosine in Nanochannel Arrays.
    ACS nano, 2018, 07-24, Volume: 12, Issue:7

    Topics: 5-Methylcytosine; DNA; Epigenesis, Genetic; Humans; Nanotechnology; Optics and Photonics

2018
TET2 controls chemoresistant slow-cycling cancer cell survival and tumor recurrence.
    The Journal of clinical investigation, 2018, 08-31, Volume: 128, Issue:9

    Topics: 5-Methylcytosine; Animals; Biomarkers, Tumor; Cell Cycle; Cell Line, Tumor; Cell Survival; Dioxygenases; DNA-Binding Proteins; Drug Resistance, Neoplasm; Epigenesis, Genetic; Female; Gene Knockdown Techniques; Humans; Mice; Mice, Inbred NOD; Mice, Nude; Mice, SCID; Neoplasms; Proto-Oncogene Proteins; Recurrence; Xenograft Model Antitumor Assays

2018
Restoration of 5-hydroxymethylcytosine by ascorbate blocks kidney tumour growth.
    EMBO reports, 2018, Volume: 19, Issue:8

    Topics: 5-Methylcytosine; Animals; Ascorbic Acid; Carcinoma, Renal Cell; Cell Line, Tumor; Cell Proliferation; Dioxygenases; DNA-Binding Proteins; Enhancer Elements, Genetic; Humans; Kidney Neoplasms; Mice; Proto-Oncogene Proteins; Transcriptome; Xenograft Model Antitumor Assays

2018
Vitamin C increases 5-hydroxymethylcytosine level and inhibits the growth of bladder cancer.
    Clinical epigenetics, 2018, 07-13, Volume: 10, Issue:1

    Topics: 5-Methylcytosine; Aged; Animals; Ascorbic Acid; Cell Proliferation; Cell Survival; Female; Gene Expression Regulation, Neoplastic; Gene Regulatory Networks; Humans; Male; Mice; Middle Aged; Prognosis; Sequence Analysis, DNA; Sequence Analysis, RNA; Survival Analysis; Urinary Bladder Neoplasms; Xenograft Model Antitumor Assays

2018
5-Hydroxymethylome in Circulating Cell-free DNA as A Potential Biomarker for Non-small-cell Lung Cancer.
    Genomics, proteomics & bioinformatics, 2018, Volume: 16, Issue:3

    Topics: 5-Methylcytosine; Biomarkers, Tumor; Carcinoma, Non-Small-Cell Lung; Case-Control Studies; Circulating Tumor DNA; DNA Methylation; Epigenomics; Female; Humans; Lung Neoplasms; Male; Middle Aged

2018
Sensitive and label-free discrimination of 5-hydroxymethylcytosine and 5-methylcytosine in DNA by ligation-mediated rolling circle amplification.
    Chemical communications (Cambridge, England), 2018, Aug-11, Volume: 54, Issue:62

    Topics: 5-Methylcytosine; DNA; Fluorescence; Humans; Molecular Structure; Nucleic Acid Amplification Techniques; Oxidation-Reduction; Uracil

2018
Glucose-regulated phosphorylation of TET2 by AMPK reveals a pathway linking diabetes to cancer.
    Nature, 2018, Volume: 559, Issue:7715

    Topics: 5-Methylcytosine; Adenylate Kinase; Animals; Diabetes Mellitus; Dioxygenases; DNA; DNA Methylation; DNA-Binding Proteins; Enzyme Stability; Epigenesis, Genetic; Glucose; Glycated Hemoglobin; Humans; Hyperglycemia; Metformin; Mice; Mice, Nude; Neoplasms; Phosphorylation; Phosphoserine; Proto-Oncogene Proteins; Substrate Specificity; Xenograft Model Antitumor Assays

2018
The role of 5-hydroxymethylcytosine in mitochondria after ischemic stroke.
    Journal of neuroscience research, 2018, Volume: 96, Issue:10

    Topics: 5-Methylcytosine; Adenosine Triphosphate; Animals; Brain Ischemia; Dioxygenases; DNA; DNA Methylation; DNA-Binding Proteins; DNA, Mitochondrial; Epigenesis, Genetic; Female; Infarction, Middle Cerebral Artery; Male; Mice, Inbred ICR; Mitochondria; Mitochondrial Proteins; NADH Dehydrogenase; Proto-Oncogene Proteins; Pyrazoles; Pyrimidines; RNA, Messenger; Sex Factors; Stroke; Up-Regulation

2018
Longitudinal Effects of Developmental Bisphenol A Exposure on Epigenome-Wide DNA Hydroxymethylation at Imprinted Loci in Mouse Blood.
    Environmental health perspectives, 2018, Volume: 126, Issue:7

    Topics: 5-Methylcytosine; Animals; Benzhydryl Compounds; Environmental Pollutants; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; Male; Mice; Phenols

2018
Decrease of 5-hydroxymethylcytosine and TET1 with nuclear exclusion of TET2 in small intestinal neuroendocrine tumors.
    BMC cancer, 2018, Jul-25, Volume: 18, Issue:1

    Topics: 5-Methylcytosine; Adult; Aged; Cell Nucleus; Dioxygenases; DNA-Binding Proteins; Humans; Intestinal Neoplasms; Intestine, Small; Middle Aged; Mixed Function Oxygenases; Neuroendocrine Tumors; Proto-Oncogene Proteins

2018
Gene body profiles of 5-hydroxymethylcytosine: potential origin, function and use as a cancer biomarker.
    Epigenomics, 2018, Volume: 10, Issue:8

    Topics: 5-Methylcytosine; Biomarkers, Tumor; Genome; Humans; Neoplasms

2018
Global DNA 5-Hydroxymethylcytosine and 5-Formylcytosine Contents Are Decreased in the Early Stage of Hepatocellular Carcinoma.
    Hepatology (Baltimore, Md.), 2019, Volume: 69, Issue:1

    Topics: 5-Methylcytosine; Carcinoma, Hepatocellular; Cytosine; DNA, Neoplasm; Female; Humans; Liver Neoplasms; Male; Middle Aged; Neoplasm Staging

2019
Expression of TET and 5-HmC in Trophoblast Villi of Women with Normal Pregnancy and with Early Pregnancy Loss.
    Current medical science, 2018, Volume: 38, Issue:3

    Topics: 5-Methylcytosine; Abortion, Spontaneous; Adult; Dioxygenases; DNA; DNA-Binding Proteins; Female; Humans; Mixed Function Oxygenases; Pregnancy; Proto-Oncogene Proteins; RNA, Messenger; Trophoblasts

2018
Age-related epigenome-wide DNA methylation and hydroxymethylation in longitudinal mouse blood.
    Epigenetics, 2018, Volume: 13, Issue:7

    Topics: 5-Methylcytosine; Aging; Animals; DNA Methylation; Epigenesis, Genetic; Epigenomics; Female; Gene Expression Regulation; Genome; Male; Mice

2018
Dysregulation and prognostic potential of 5-methylcytosine (5mC), 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC) levels in prostate cancer.
    Clinical epigenetics, 2018, 08-07, Volume: 10, Issue:1

    Topics: 5-Methylcytosine; Adult; Aged; Cytosine; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Humans; Male; Middle Aged; Prognosis; Prostatic Neoplasms; Receptors, Estrogen; Tissue Array Analysis

2018
Association of Bisphenol A Exposure with LINE-1 Hydroxymethylation in Human Semen.
    International journal of environmental research and public health, 2018, 08-17, Volume: 15, Issue:8

    Topics: 5-Methylcytosine; Adult; Benzhydryl Compounds; China; Cohort Studies; DNA Methylation; Endocrine Disruptors; Humans; Male; Occupational Exposure; Phenols; Semen

2018
Chronic ethanol-mediated hepatocyte apoptosis links to decreased TET1 and 5-hydroxymethylcytosine formation.
    FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2019, Volume: 33, Issue:2

    Topics: 5-Methylcytosine; Apoptosis; Cell Cycle Proteins; Cell Line; Deferoxamine; DNA Damage; Down-Regulation; Epigenesis, Genetic; Ethanol; Gene Knockdown Techniques; Hepatocytes; Humans; Liver Diseases, Alcoholic; Mixed Function Oxygenases; Nuclear Proteins; Protein Binding; Proto-Oncogene Proteins; Proto-Oncogene Proteins c-bcl-2

2019
Recognition of modified cytosine variants by the DNA-binding domain of methyl-directed endonuclease McrBC.
    FEBS letters, 2018, Volume: 592, Issue:19

    Topics: 5-Methylcytosine; Crystallography, X-Ray; Cytosine; DNA; DNA Restriction Enzymes; Escherichia coli; Escherichia coli Proteins; Models, Molecular; Molecular Structure; Protein Binding; Protein Domains

2018
Crystal structure of the modification-dependent SRA-HNH endonuclease TagI.
    Nucleic acids research, 2018, 11-02, Volume: 46, Issue:19

    Topics: 5-Methylcytosine; Amino Acid Sequence; Bacterial Proteins; Base Sequence; Binding Sites; Binding, Competitive; Crystallography, X-Ray; DNA; DNA Restriction Enzymes; Models, Molecular; Nucleic Acid Conformation; Protein Binding; Protein Domains; Sequence Homology, Amino Acid

2018
Epigenetic markers in basal cell carcinoma: universal themes in oncogenesis and tumor stratification? - a short report.
    Cellular oncology (Dordrecht), 2018, Volume: 41, Issue:6

    Topics: 5-Methylcytosine; Carcinogenesis; Carcinoma, Basal Cell; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Skin Neoplasms

2018
Immunohistochemical Detection of 5-Methylcytosine and 5-Hydroxymethylcytosine in Developing and Postmitotic Mouse Retina.
    Journal of visualized experiments : JoVE, 2018, 08-29, Issue:138

    Topics: 5-Methylcytosine; Animals; Humans; Immunohistochemistry; Mice; Retina

2018
Maintenance DNA Methyltransferase Activity in the Presence of Oxidized Forms of 5-Methylcytosine: Structural Basis for Ten Eleven Translocation-Mediated DNA Demethylation.
    Biochemistry, 2018, 10-23, Volume: 57, Issue:42

    Topics: 5-Methylcytosine; Catalysis; CpG Islands; DNA (Cytosine-5-)-Methyltransferase 1; DNA Demethylation; Humans; Oxidation-Reduction

2018
MicroRNA-26b promotes transition from Kit
    Experimental cell research, 2018, 12-15, Volume: 373, Issue:1-2

    Topics: 5-Methylcytosine; Animals; Apoptosis; Cell Differentiation; Cell Proliferation; Cells, Cultured; Dioxygenases; DNA-Binding Proteins; Male; Mice; MicroRNAs; Promyelocytic Leukemia Zinc Finger Protein; Proto-Oncogene Proteins; Proto-Oncogene Proteins c-kit; Spermatogenesis; Spermatogonia; Tretinoin

2018
Bisulfite-Free, Nanoscale Analysis of 5-Hydroxymethylcytosine at Single Base Resolution.
    Journal of the American Chemical Society, 2018, 10-17, Volume: 140, Issue:41

    Topics: 5-Methylcytosine; Cell-Free Nucleic Acids; Embryonic Stem Cells; Genome; Genomics; Humans; Nucleic Acid Amplification Techniques; Oxidation-Reduction; Sequence Analysis, DNA

2018
Hypersensitive quantification of global 5-hydroxymethylcytosine by chemoenzymatic tagging.
    Analytica chimica acta, 2018, Dec-14, Volume: 1038

    Topics: 5-Methylcytosine; Animals; Chromatography, Liquid; Humans; Leukemia; Mice; Tandem Mass Spectrometry

2018
Effects of ten-eleven translocation 1 (Tet1) on DNA methylation and gene expression in chicken primordial germ cells.
    Reproduction, fertility, and development, 2019, Volume: 31, Issue:3

    Topics: 5-Methylcytosine; Amino Acid Transport System y+L; Animals; Cell Proliferation; Cell Survival; Chickens; Deleted in Azoospermia 1 Protein; DNA Methylation; Gene Knockdown Techniques; Genomic Imprinting; Germ Cells; Mixed Function Oxygenases; Nanog Homeobox Protein; Proto-Oncogene Proteins; SOXB1 Transcription Factors

2019
OGT binds a conserved C-terminal domain of TET1 to regulate TET1 activity and function in development.
    eLife, 2018, 10-16, Volume: 7

    Topics: 5-Methylcytosine; Animals; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenomics; Gene Expression Regulation, Developmental; Hematopoiesis; Humans; Mice; Mouse Embryonic Stem Cells; Mutation; N-Acetylglucosaminyltransferases; Protein Binding; Protein Domains; Proto-Oncogene Proteins; Zebrafish; Zebrafish Proteins

2018
Mirror Bisulfite Sequencing: A Method for Single-Base Resolution of Hydroxymethylcytosine.
    Analytical chemistry, 2018, 11-20, Volume: 90, Issue:22

    Topics: 5-Methylcytosine; Base Sequence; DNA; DNA-Cytosine Methylases; Gene Library; Glucosyltransferases; Humans; Reproducibility of Results; Sensitivity and Specificity; Sequence Analysis, DNA; Sulfites

2018
Epigenetics and Regulation of Oxidative Stress in Diabetic Retinopathy.
    Investigative ophthalmology & visual science, 2018, 10-01, Volume: 59, Issue:12

    Topics: 5-Methylcytosine; Animals; Cells, Cultured; Diabetes Mellitus, Experimental; Diabetic Retinopathy; DNA Methylation; Endothelial Cells; Epigenomics; Female; Gene Expression Regulation; Glucose; Humans; Male; Mice; Mice, Inbred C57BL; NF-kappa B; Oxidative Stress; rac1 GTP-Binding Protein; Reactive Oxygen Species; Real-Time Polymerase Chain Reaction; Retinal Vessels; RNA, Small Interfering; Signal Transduction; Transfection

2018
Computational Study on the Excited-State Decay of 5-Methylcytosine and 5-Hydroxymethylcytosine: The Common Form of DNA Methylation and Its Oxidation Product.
    The journal of physical chemistry. B, 2018, 11-21, Volume: 122, Issue:46

    Topics: 5-Methylcytosine; Models, Chemical; Molecular Conformation; Thermodynamics

2018
TET2-Mediated Spatiotemporal Changes of 5-Hydroxymethylcytosine During Organogenesis in the Late Mouse Fetus.
    Anatomical record (Hoboken, N.J. : 2007), 2019, Volume: 302, Issue:6

    Topics: 5-Methylcytosine; Animals; Brain; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenomics; Female; Fetus; Heart; Mice; Organogenesis; Pregnancy; Proto-Oncogene Proteins; Spatio-Temporal Analysis

2019
Development of the Bioluminescent Immunoassay for the Detection of 5-Hydroxymethylcytosine in Dinoflagellate.
    Analytical sciences : the international journal of the Japan Society for Analytical Chemistry, 2019, Mar-10, Volume: 35, Issue:3

    Topics: 5-Methylcytosine; Antibodies, Immobilized; Biotinylation; Dinoflagellida; DNA; Epigenesis, Genetic; Immunoenzyme Techniques; Luciferases; Luminescent Measurements; Streptavidin

2019
Failure to convert.
    Nature chemical biology, 2018, Volume: 14, Issue:12

    Topics: 5-Methylcytosine; DNA

2018
Trichloroethylene exposure in mid-pregnancy decreased fetal weight and increased placental markers of oxidative stress in rats.
    Reproductive toxicology (Elmsford, N.Y.), 2019, Volume: 83

    Topics: 5-Methylcytosine; 8-Hydroxy-2'-Deoxyguanosine; Animals; Biomarkers; Deoxyguanosine; Dioxygenases; Female; Fetal Weight; Maternal-Fetal Exchange; Oxidative Stress; Placenta; Pregnancy; Rats, Wistar; Solvents; Trichloroethylene

2019
Inter-Cell and Inter-Chromosome Variability of 5-Hydroxymethylcytosine Patterns in Noncultured Human Embryonic and Extraembryonic Cells.
    Cytogenetic and genome research, 2018, Volume: 156, Issue:3

    Topics: 5-Methylcytosine; Cell Communication; Chromosome Aberrations; Chromosomes, Human, Pair 1; Chromosomes, Human, Pair 16; Chromosomes, Human, Pair 9; DNA Methylation; Embryo, Mammalian; Epigenesis, Genetic; Female; Fluorescent Antibody Technique; Humans; Pregnancy; Pregnancy Trimester, First

2018
Versatile Electroanalytical Bioplatforms for Simultaneous Determination of Cancer-Related DNA 5-Methyl- and 5-Hydroxymethyl-Cytosines at Global and Gene-Specific Levels in Human Serum and Tissues.
    ACS sensors, 2019, 01-25, Volume: 4, Issue:1

    Topics: 5-Methylcytosine; Antibodies, Monoclonal; Armoracia; Biomarkers, Tumor; Biosensing Techniques; DNA; DNA Methylation; DNA Modification Methylases; DNA Repair Enzymes; Electrochemical Techniques; Fluorescent Dyes; Horseradish Peroxidase; Humans; Hydrogen Peroxide; Immunomagnetic Separation; Limit of Detection; Tumor Suppressor Proteins

2019
Lower number of 5-hydroxymethylcytosine-expressing cells in plasma cell myeloma than in reactive plasma cell hyperplasia: a useful immunohistochemical approach for identification of neoplastic plasma cells.
    Pathology, 2019, Volume: 51, Issue:1

    Topics: 5-Methylcytosine; Aged; Aged, 80 and over; Diagnosis, Differential; Female; Humans; Hyperplasia; Immunohistochemistry; Male; Middle Aged; Multiple Myeloma; Plasma Cells

2019
TET2-Dependent Hydroxymethylome Plasticity Reduces Melanoma Initiation and Progression.
    Cancer research, 2019, 02-01, Volume: 79, Issue:3

    Topics: 5-Methylcytosine; Animals; Dioxygenases; Disease Progression; DNA-Binding Proteins; DNA, Neoplasm; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Humans; Melanoma, Experimental; Mice; Mice, Inbred C57BL; Mice, Inbred DBA; Mice, Knockout; Mice, Transgenic; Monomeric GTP-Binding Proteins; Proto-Oncogene Proteins; Rats; Skin Neoplasms

2019
Ten-Eleven Translocation Proteins Modulate the Response to Environmental Stress in Mice.
    Cell reports, 2018, 12-11, Volume: 25, Issue:11

    Topics: 5-Methylcytosine; Animals; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Environment; Gene Expression Regulation; Hypoxia-Inducible Factor 1, alpha Subunit; Male; Mice, Inbred C57BL; Mice, Knockout; Phenotype; Prefrontal Cortex; Protein Binding; Proto-Oncogene Proteins; Restraint, Physical; Stress, Physiological

2018
TP53 inactivation and expression of methylation-associated proteins in gastric adenocarcinoma with enteroblastic differentiation.
    Virchows Archiv : an international journal of pathology, 2019, Volume: 474, Issue:3

    Topics: 5-Methylcytosine; Adenocarcinoma; Aged; Aged, 80 and over; Ataxia Telangiectasia Mutated Proteins; Biomarkers, Tumor; Cell Differentiation; DNA Methylation; Female; Gene Silencing; Humans; Loss of Heterozygosity; Lymphatic Metastasis; Male; Middle Aged; Mixed Function Oxygenases; Mutation; Neoplasm Staging; Promoter Regions, Genetic; Proto-Oncogene Proteins; Stomach Neoplasms; Treatment Outcome; Tumor Suppressor Protein p53

2019
HMCES Maintains Genome Integrity by Shielding Abasic Sites in Single-Strand DNA.
    Cell, 2019, 01-10, Volume: 176, Issue:1-2

    Topics: 5-Methylcytosine; Apurinic Acid; DNA; DNA Damage; DNA Repair; DNA Replication; DNA-Binding Proteins; DNA, Single-Stranded; Endonucleases; Escherichia coli; Polynucleotides; Proliferating Cell Nuclear Antigen

2019
5-methylcytosine and 5-hydroxymethylcytosine in brains of patients with multiple system atrophy and patients with Parkinson's disease.
    Journal of chemical neuroanatomy, 2019, Volume: 96

    Topics: 5-Methylcytosine; Aged; Aged, 80 and over; Brain; Female; Humans; Male; Middle Aged; Multiple System Atrophy; Parkinson Disease

2019
The degree of mitochondrial DNA methylation in tumor models of glioblastoma and osteosarcoma.
    Clinical epigenetics, 2018, 12-17, Volume: 10, Issue:1

    Topics: 5-Methylcytosine; Animals; Bone Neoplasms; Brain Neoplasms; Cell Line, Tumor; DNA Copy Number Variations; DNA Methylation; DNA, Mitochondrial; Genotype; Glioblastoma; Humans; Immunoprecipitation; Mice; Mitochondria; Neoplasm Transplantation; Osteosarcoma; Whole Genome Sequencing

2018
Ascorbic acid improves parthenogenetic embryo development through TET proteins in mice.
    Bioscience reports, 2019, 01-31, Volume: 39, Issue:1

    Topics: 5-Methylcytosine; Animals; Ascorbic Acid; Blastocyst; Dioxygenases; DNA-Binding Proteins; Embryonic Development; Female; Gene Expression Regulation, Developmental; Glycine; Male; Mice; Mice, Inbred C57BL; Parthenogenesis; Proto-Oncogene Proteins; Signal Transduction

2019
Label-Free and Immobilization-Free Electrochemical Magnetobiosensor for Sensitive Detection of 5-Hydroxymethylcytosine in Genomic DNA.
    Analytical chemistry, 2019, 01-15, Volume: 91, Issue:2

    Topics: 5-Methylcytosine; Biosensing Techniques; Carbon; DNA; DNA Nucleotidylexotransferase; Electrochemical Techniques; Electrodes; Ferricyanides; HEK293 Cells; HeLa Cells; Humans; Limit of Detection; Magnetic Phenomena; Oxidation-Reduction; Ruthenium Compounds

2019
Distal regulatory elements identified by methylation and hydroxymethylation haplotype blocks from mouse brain.
    Epigenetics & chromatin, 2018, 12-29, Volume: 11, Issue:1

    Topics: 5-Methylcytosine; Animals; Brain; Cerebellar Cortex; Cerebellum; Chromosome Mapping; CpG Islands; Cytosine; DNA Methylation; Female; Genome; Haplotypes; Mice; Mice, Inbred C57BL; Olfactory Bulb; Regulatory Sequences, Nucleic Acid; Sequence Analysis, DNA

2018
Specific functions of TET1 and TET2 in regulating mesenchymal cell lineage determination.
    Epigenetics & chromatin, 2019, 01-03, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Adipogenesis; Animals; Cell Differentiation; Cells, Cultured; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Female; Humans; Mesenchymal Stem Cells; Mice; Mice, Inbred C57BL; Mixed Function Oxygenases; Osteogenesis; Protein Binding; Proto-Oncogene Proteins; Repressor Proteins; Sin3 Histone Deacetylase and Corepressor Complex

2019
Global distribution of DNA hydroxymethylation and DNA methylation in chronic lymphocytic leukemia.
    Epigenetics & chromatin, 2019, 01-07, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; B-Lymphocytes; Case-Control Studies; Cell Line, Tumor; DNA Methylation; Humans; Leukemia, Lymphocytic, Chronic, B-Cell

2019
Simultaneous Targeted Methylation Sequencing (sTM-Seq).
    Current protocols in human genetics, 2019, Volume: 101, Issue:1

    Topics: 5-Methylcytosine; DNA; DNA Methylation; DNA Primers; Epigenesis, Genetic; Genome; Genomics; High-Throughput Nucleotide Sequencing; Humans; Sequence Analysis, DNA; Software

2019
Bisphenol A Exposure and Sperm ACHE Hydroxymethylation in Men.
    International journal of environmental research and public health, 2019, 01-08, Volume: 16, Issue:1

    Topics: 5-Methylcytosine; Acetylcholinesterase; Adult; Air Pollutants, Occupational; Benzhydryl Compounds; DNA Methylation; Epigenesis, Genetic; Humans; Hydroxylation; Male; Middle Aged; Phenols; Spermatozoa

2019
Diagnostic utility of dual 5-hydroxymethylcytosine/Melan-A immunohistochemistry in differentiating nodal nevus from metastatic melanoma: An effective first-line test for the workup of sentinel lymph node specimen.
    Journal of cutaneous pathology, 2019, Volume: 46, Issue:4

    Topics: 5-Methylcytosine; Biomarkers, Tumor; Diagnosis, Differential; Humans; Immunohistochemistry; Lymphatic Metastasis; MART-1 Antigen; Melanoma; Melanoma, Cutaneous Malignant; Nevus, Pigmented; Sentinel Lymph Node; Sentinel Lymph Node Biopsy; Skin Neoplasms; Staining and Labeling

2019
ME-Class2 reveals context dependent regulatory roles for 5-hydroxymethylcytosine.
    Nucleic acids research, 2019, 03-18, Volume: 47, Issue:5

    Topics: 5-Methylcytosine; Animals; Brain; Databases, Genetic; Datasets as Topic; Genes; Genome; Humans; Machine Learning; Methylation; Mice; Organ Specificity; Promoter Regions, Genetic; Sequence Analysis, RNA; Sulfites

2019
X-ray irradiation induces subtle changes in the genome-wide distribution of DNA hydroxymethylation with opposing trends in genic and intergenic regions.
    Epigenetics, 2019, Volume: 14, Issue:1

    Topics: 5-Methylcytosine; Cells, Cultured; CpG Islands; DNA Methylation; DNA, Intergenic; Fibroblasts; Genome, Human; Humans; X-Rays

2019
The contribution of active and passive mechanisms of 5mC and 5hmC removal in human T lymphocytes is differentiation- and activation-dependent.
    European journal of immunology, 2019, Volume: 49, Issue:4

    Topics: 5-Methylcytosine; Biomarkers; Cell Differentiation; DNA Methylation; Humans; Immunophenotyping; Lymphocyte Activation; Receptors, Antigen, T-Cell; T-Lymphocytes

2019
Ascorbic acid-induced TET activation mitigates adverse hydroxymethylcytosine loss in renal cell carcinoma.
    The Journal of clinical investigation, 2019, 03-04, Volume: 129, Issue:4

    Topics: 5-Methylcytosine; Adult; Alcohol Oxidoreductases; Animals; Ascorbic Acid; Carcinoma, Renal Cell; Cell Line, Tumor; Female; Gene Deletion; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Neoplastic; Humans; Kidney Neoplasms; Male; Mice

2019
Decreased 5-hydroxymethylcytosine immunoreactivity in primary Merkel cell carcinoma is a strong predictor for disease-specific death.
    The British journal of dermatology, 2019, Volume: 181, Issue:2

    Topics: 5-Methylcytosine; Aged; Aged, 80 and over; Biomarkers, Tumor; Carcinoma, Merkel Cell; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Female; Follow-Up Studies; Humans; Immunohistochemistry; Isocitrate Dehydrogenase; Male; Merkel cell polyomavirus; Neoplasm Recurrence, Local; Neoplasm Staging; Pilot Projects; Prognosis; Proto-Oncogene Proteins; Sex Factors; Skin; Skin Neoplasms; Viral Load

2019
Vitrification of murine mature metaphase II oocytes perturbs DNA methylation reprogramming during preimplantation embryo development.
    Cryobiology, 2019, Volume: 87

    Topics: 5-Methylcytosine; Animals; Blastocyst; Cryopreservation; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryonic Development; Female; Fertilization in Vitro; Metaphase; Mice; Morula; Oocytes; Oogenesis; Pregnancy; Proto-Oncogene Proteins; Vitrification

2019
Differential distribution of the epigenetic marker 5-hydroxymethylcytosine occurs in hair follicle stem cells during bulge activation.
    Journal of cutaneous pathology, 2019, Volume: 46, Issue:5

    Topics: 5-Methylcytosine; Animals; Biomarkers; Cell Differentiation; Cell Proliferation; Epigenesis, Genetic; Hair Follicle; Humans; Keratin-15; Mice; Stem Cells

2019
Epigenetic modulation of β cells by interferon-α via PNPT1/mir-26a/TET2 triggers autoimmune diabetes.
    JCI insight, 2019, 03-07, Volume: 4, Issue:5

    Topics: 5-Methylcytosine; Animals; Cell Line; Cytokines; Diabetes Mellitus, Type 1; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Exoribonucleases; Female; Gene Expression Regulation; Humans; Insulin-Secreting Cells; Interferon-alpha; Mice; Mice, Inbred NOD; Mice, Transgenic; MicroRNAs; Microtubule-Associated Proteins; Proto-Oncogene Proteins; T-Lymphocytes; Up-Regulation

2019
Sensitive detection of hydroxymethylcytosine levels in normal and neoplastic cells and tissues.
    Electrophoresis, 2019, Volume: 40, Issue:9

    Topics: 5-Methylcytosine; Animals; Cell Dedifferentiation; DNA Methylation; Electrophoresis, Capillary; Fluorescence; Glioma; Humans; Lung Neoplasms; Mice; Neoplasms

2019
The global DNA and RNA methylation and their reversal in lung under different concentration exposure of ambient air particulate matter in mice.
    Ecotoxicology and environmental safety, 2019, May-15, Volume: 172

    Topics: 5-Methylcytosine; Air Pollution; Animals; DNA Methylation; Gene Expression; Lung; Male; Mice; Mice, Inbred C57BL; Particulate Matter

2019
DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns.
    Cancer cell, 2019, 02-11, Volume: 35, Issue:2

    Topics: 5-Methylcytosine; Animals; Cell Line, Tumor; CpG Islands; DNA Methylation; DNA-Binding Proteins; DNA, Neoplasm; Female; Gene Expression Regulation, Neoplastic; Histone-Lysine N-Methyltransferase; Histones; Humans; Male; Methylation; Mice, Inbred C57BL; Mice, Knockout; Myeloid-Lymphoid Leukemia Protein; Neoplasm Proteins; Neoplasms; Promoter Regions, Genetic

2019
TET1 promotes 5hmC-dependent stemness, and inhibits a 5hmC-independent epithelial-mesenchymal transition, in cervical precancerous lesions.
    Cancer letters, 2019, 05-28, Volume: 450

    Topics: 5-Methylcytosine; Animals; Cell Line, Tumor; Epithelial-Mesenchymal Transition; Female; HeLa Cells; Heterografts; Humans; Mice; Mixed Function Oxygenases; Neoplastic Stem Cells; Precancerous Conditions; Proto-Oncogene Proteins; Squamous Intraepithelial Lesions of the Cervix; Uterine Cervical Dysplasia; Uterine Cervical Neoplasms; Vimentin; Zinc Finger E-box-Binding Homeobox 1

2019
New guidelines for DNA methylome studies regarding 5-hydroxymethylcytosine for understanding transcriptional regulation.
    Genome research, 2019, Volume: 29, Issue:4

    Topics: 5-Methylcytosine; DNA Methylation; Gene Expression Regulation, Neoplastic; Humans; Practice Guidelines as Topic; RNA, Messenger; Whole Genome Sequencing

2019
Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution.
    Nature biotechnology, 2019, Volume: 37, Issue:4

    Topics: 5-Methylcytosine; Animals; Base Sequence; Biotechnology; CpG Islands; DNA; DNA Methylation; Humans; Mice; Sequence Analysis, DNA; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Sulfites; Whole Genome Sequencing

2019
Assessment and site-specific manipulation of DNA (hydroxy-)methylation during mouse corticogenesis.
    Life science alliance, 2019, Volume: 2, Issue:2

    Topics: 5-Methylcytosine; Animals; Cadherins; Cell Differentiation; Cell Lineage; CRISPR-Associated Protein 9; Cytosine; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; Mice; Mice, Inbred C57BL; Neural Stem Cells; Neurogenesis; Oncogene Proteins, Fusion; Pregnancy; Proto-Oncogene Proteins; Transcription Factors; Transcriptome

2019
5hmC Level Predicts Biochemical Failure Following Radical Prostatectomy in Prostate Cancer Patients with ERG Negative Tumors.
    International journal of molecular sciences, 2019, Feb-27, Volume: 20, Issue:5

    Topics: 5-Methylcytosine; Aged; Cohort Studies; Humans; Male; Middle Aged; Multivariate Analysis; Proportional Hazards Models; Prostatectomy; Prostatic Neoplasms; ROC Curve; Transcriptional Regulator ERG

2019
The expression of TET3 regulated cell proliferation in HepG2 cells.
    Gene, 2019, May-25, Volume: 698

    Topics: 5-Methylcytosine; Ascorbic Acid; Cell Proliferation; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Hep G2 Cells; Humans; Mixed Function Oxygenases; Oxidation-Reduction; Proto-Oncogene Proteins; Transcriptome

2019
Reversal of TET-mediated 5-hmC loss in hypoxic fibroblasts by ascorbic acid.
    Laboratory investigation; a journal of technical methods and pathology, 2019, Volume: 99, Issue:8

    Topics: 5-Methylcytosine; Ascorbic Acid; Cell Hypoxia; Cells, Cultured; Cicatrix; Dioxygenases; DNA Methylation; Epigenesis, Genetic; Fibroblasts; Focal Adhesion Protein-Tyrosine Kinases; Gene Expression; Humans; Hypoxia-Inducible Factor 1, alpha Subunit

2019
DNA methylation and hydroxymethylation are associated with the degree of coronary atherosclerosis in elderly patients with coronary heart disease.
    Life sciences, 2019, May-01, Volume: 224

    Topics: 5-Methylcytosine; Aged; Atherosclerosis; Case-Control Studies; Coronary Disease; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Female; Gene Expression Regulation; Humans; Leukocytes, Mononuclear; Male; Proto-Oncogene Proteins; Up-Regulation

2019
5-Hydroxymethylcytosine profiling from genomic and cell-free DNA for colorectal cancers patients.
    Journal of cellular and molecular medicine, 2019, Volume: 23, Issue:5

    Topics: 5-Methylcytosine; Cell-Free Nucleic Acids; Colorectal Neoplasms; DNA Methylation; DNA, Neoplasm; Epigenomics; Gene Expression Regulation, Neoplastic; Gene Ontology; Genomics; Humans; Precancerous Conditions; Sequence Analysis, DNA

2019
Bisulfite-free epigenetic sequencing.
    Nature methods, 2019, Volume: 16, Issue:4

    Topics: 5-Methylcytosine; Sequence Analysis, DNA; Sulfites

2019
Hyperglycemia affects global 5-methylcytosine and 5-hydroxymethylcytosine in blood genomic DNA through upregulation of SIRT6 and TETs.
    Clinical epigenetics, 2019, 04-15, Volume: 11, Issue:1

    Topics: 5-Methylcytosine; Aged; Animals; Case-Control Studies; Diabetes Mellitus, Experimental; Diabetes Mellitus, Type 2; Dioxygenases; DNA-Binding Proteins; Female; Gene Expression Regulation; Humans; Leukocytes; Male; Middle Aged; Proto-Oncogene Proteins; Rats; Sirtuins; Up-Regulation

2019
Hydroxyurea promotes TET1 expression and induces apoptosis in osteosarcoma cells.
    Bioscience reports, 2019, 05-31, Volume: 39, Issue:5

    Topics: 5-Methylcytosine; Antineoplastic Agents; Apoptosis; Bone Neoplasms; Cell Cycle; Cell Line, Tumor; Cell Proliferation; Humans; Hydroxyurea; Mixed Function Oxygenases; Osteosarcoma; Proto-Oncogene Proteins; Up-Regulation

2019
Association of intronic DNA methylation and hydroxymethylation alterations in the epigenetic etiology of dilated cardiomyopathy.
    American journal of physiology. Heart and circulatory physiology, 2019, 07-01, Volume: 317, Issue:1

    Topics: 5-Methylcytosine; Animals; Cardiomyopathy, Dilated; Carrier Proteins; CpG Islands; DNA Methylation; Epigenesis, Genetic; Gene Regulatory Networks; Genetic Predisposition to Disease; Hydroxylation; Introns; Male; Mice, Mutant Strains; Mutation; Phenotype; Promoter Regions, Genetic; Transcriptome; Ventricular Function, Left

2019
TET enzymes augment activation-induced deaminase (AID) expression via 5-hydroxymethylcytosine modifications at the
    Science immunology, 2019, 04-26, Volume: 4, Issue:34

    Topics: 5-Methylcytosine; Animals; B-Lymphocytes; Basic-Leucine Zipper Transcription Factors; Cell Differentiation; Cells, Cultured; Cytidine Deaminase; Dioxygenases; DNA Demethylation; DNA-Binding Proteins; Gene Expression Regulation; Genetic Loci; Immunoglobulin Class Switching; Lymphocyte Activation; Mice; Mice, Transgenic; Primary Cell Culture; Proto-Oncogene Proteins; Response Elements

2019
Characterization of 5-methylcytosine and 5-hydroxymethylcytosine in human placenta cell types across gestation.
    Epigenetics, 2019, Volume: 14, Issue:7

    Topics: 5-Methylcytosine; Abortion, Legal; Adult; DNA Methylation; Epigenesis, Genetic; Female; Humans; Placenta; Placentation; Pre-Eclampsia; Pregnancy; Pregnancy Complications; Trophoblasts

2019
Loss of 5-hydroxymethylcytosine immunohistochemical expression is a useful diagnostic aid for distinguishing hepatocellular carcinoma in cytology fine needle aspiration specimens.
    Cytopathology : official journal of the British Society for Clinical Cytology, 2019, Volume: 30, Issue:5

    Topics: 5-Methylcytosine; Biopsy, Fine-Needle; Carcinoma, Hepatocellular; Cytodiagnosis; Diagnosis, Differential; Hepatocytes; Humans; Immunohistochemistry; Liver; Liver Neoplasms; Predictive Value of Tests; ROC Curve; Sensitivity and Specificity

2019
EHMT2 and SETDB1 protect the maternal pronucleus from 5mC oxidation.
    Proceedings of the National Academy of Sciences of the United States of America, 2019, 05-28, Volume: 116, Issue:22

    Topics: 5-Methylcytosine; Animals; Female; Histone-Lysine N-Methyltransferase; Mice; Mice, Inbred C57BL; Mice, Knockout; Mutation; Oocytes; Oxidation-Reduction; Zygote

2019
Thyroid Hormone Protects Primary Cortical Neurons Exposed to Hypoxia by Reducing DNA Methylation and Apoptosis.
    Endocrinology, 2019, 10-01, Volume: 160, Issue:10

    Topics: 5-Methylcytosine; Animals; Apoptosis; Cerebral Cortex; DNA Methylation; DNA Methyltransferase 3A; Gene Expression Regulation; Neural Stem Cells; Neurons; Oxygen; Proto-Oncogene Proteins; Transcriptome; Triiodothyronine

2019
A 3D bioprinter platform for mechanistic analysis of tumoroids and chimeric mammary organoids.
    Scientific reports, 2019, 05-16, Volume: 9, Issue:1

    Topics: 5-Methylcytosine; Biotechnology; Breast Neoplasms; Carcinogenesis; Cell Line; Cells, Cultured; Female; Humans; Mammary Glands, Human; MCF-7 Cells; Organoids; Printing, Three-Dimensional; Tumor Microenvironment

2019
DNA repair enzymes ALKBH2, ALKBH3, and AlkB oxidize 5-methylcytosine to 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxylcytosine in vitro.
    Nucleic acids research, 2019, 06-20, Volume: 47, Issue:11

    Topics: 5-Methylcytosine; AlkB Enzymes; AlkB Homolog 2, Alpha-Ketoglutarate-Dependent Dioxygenase; AlkB Homolog 3, Alpha-Ketoglutarate-Dependent Dioxygenase; Animals; Computational Biology; CpG Islands; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Humans; Molecular Structure; Oxidation-Reduction

2019
Jump-seq: Genome-Wide Capture and Amplification of 5-Hydroxymethylcytosine Sites.
    Journal of the American Chemical Society, 2019, 06-05, Volume: 141, Issue:22

    Topics: 5-Methylcytosine; DNA; Genomics; Nucleic Acid Amplification Techniques

2019
Neuronal methylome reveals CREB-associated neuro-axonal impairment in multiple sclerosis.
    Clinical epigenetics, 2019, 05-30, Volume: 11, Issue:1

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Cadaver; Case-Control Studies; Cyclic AMP Response Element-Binding Protein; DNA Methylation; Down-Regulation; Epigenesis, Genetic; Female; High-Throughput Nucleotide Sequencing; Humans; Male; Middle Aged; Multiple Sclerosis; Neurons; Phosphorylation; Sequence Analysis, DNA; Signal Transduction; White Matter

2019
Decreased global DNA hydroxymethylation in neural tube defects: Association with polycyclic aromatic hydrocarbons.
    Epigenetics, 2019, Volume: 14, Issue:10

    Topics: 5-Methylcytosine; Animals; Case-Control Studies; Disease Models, Animal; Embryo Culture Techniques; Female; Humans; Linear Models; Liver; Male; Maternal Exposure; Mice; Neural Tube Defects; Polycyclic Aromatic Hydrocarbons; Pregnancy; Superoxide Dismutase

2019
Statistical methods for classification of 5hmC levels based on the Illumina Inifinium HumanMethylation450 (450k) array data, under the paired bisulfite (BS) and oxidative bisulfite (oxBS) treatment.
    PloS one, 2019, Volume: 14, Issue:6

    Topics: 5-Methylcytosine; Case-Control Studies; DNA Methylation; Humans; Neoplasms; Oxidation-Reduction; Sulfites

2019
Certain and uncertain malignant potential in melanocytic skin neoplasms.
    Journal of cutaneous pathology, 2019, Volume: 46, Issue:9

    Topics: 5-Methylcytosine; Biomarkers; Humans; Nevus, Pigmented; Skin Neoplasms

2019
5-Hydroxymethylcytosine as a clinical biomarker: Fluorescence-based assay for high-throughput epigenetic quantification in human tissues.
    International journal of cancer, 2020, 01-01, Volume: 146, Issue:1

    Topics: 5-Methylcytosine; Animals; Biomarkers, Tumor; Cost-Benefit Analysis; Epigenesis, Genetic; Fluorescence; High-Throughput Screening Assays; Humans; Mice; Neoplasms; Proof of Concept Study

2020
Epigenetic downregulation of TET3 reduces genome-wide 5hmC levels and promotes glioblastoma tumorigenesis.
    International journal of cancer, 2020, 01-15, Volume: 146, Issue:2

    Topics: 5-Methylcytosine; Animals; Biopsy; Brain Neoplasms; Carcinogenesis; Cell Line, Tumor; Dioxygenases; DNA Methylation; Down-Regulation; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Glioblastoma; Histone Code; Humans; Mice; Prognosis; RNA, Messenger; Survival Analysis; Xenograft Model Antitumor Assays

2020
5-Methylcytosine is Oxidized to the Natural Metabolites of TET Enzymes by a Biomimetic Iron(IV)-Oxo Complex.
    Chemistry (Weinheim an der Bergstrasse, Germany), 2019, Sep-18, Volume: 25, Issue:52

    Topics: 5-Methylcytosine; Biomimetic Materials; Cerium; Coordination Complexes; Cytosine; Dioxygenases; Epigenesis, Genetic; Iron; Kinetics; Oxidation-Reduction; Thermodynamics

2019
Altered expression of epigenetic regulators and imprinted genes in human placenta and fetal tissues from second trimester spontaneous pregnancy losses.
    Epigenetics, 2019, Volume: 14, Issue:12

    Topics: 5-Methylcytosine; Aborted Fetus; Abortion, Spontaneous; Adult; Cyclin-Dependent Kinase Inhibitor p57; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Female; Genomic Imprinting; Humans; Insulin-Like Growth Factor II; Placenta; Pregnancy; Pregnancy Trimester, Second; Proto-Oncogene Proteins; RNA, Long Noncoding

2019
Library Preparation for Multiplexed Reduced Representation Bisulfite Sequencing with a Universal Adapter.
    Methods in molecular biology (Clifton, N.J.), 2019, Volume: 2018

    Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; DNA Methylation; DNA Primers; Gene Library; Rats; Sequence Analysis, DNA; Sulfites

2019
MYC deregulates TET1 and TET2 expression to control global DNA (hydroxy)methylation and gene expression to maintain a neoplastic phenotype in T-ALL.
    Epigenetics & chromatin, 2019, 07-02, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Animals; Cell Line, Tumor; Cytosine; Dioxygenases; DNA; DNA Methylation; DNA-Binding Proteins; Gene Expression Regulation, Leukemic; Humans; Mice; Mice, Transgenic; Mixed Function Oxygenases; Precursor Cell Lymphoblastic Leukemia-Lymphoma; Promoter Regions, Genetic; Protein Processing, Post-Translational; Proto-Oncogene Proteins; Proto-Oncogene Proteins c-myc

2019
Crosslink and shield: protecting abasic sites from error-prone repair.
    Nature structural & molecular biology, 2019, Volume: 26, Issue:7

    Topics: 5-Methylcytosine; DNA Repair; DNA-Binding Proteins; DNA, Single-Stranded; Escherichia coli; Escherichia coli Proteins; Humans; Models, Molecular

2019
Characterization of DNA hydroxymethylation profile in cervical cancer.
    Artificial cells, nanomedicine, and biotechnology, 2019, Volume: 47, Issue:1

    Topics: 5-Methylcytosine; Adult; DNA Methylation; Female; Genomics; Humans; Transcription, Genetic; Uterine Cervical Neoplasms

2019
Testes and duct deferens of mice during space flight: cytoskeleton structure, sperm-specific proteins and epigenetic events.
    Scientific reports, 2019, 07-05, Volume: 9, Issue:1

    Topics: 5-Methylcytosine; Animals; Cytoskeletal Proteins; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression Regulation; Histone Deacetylase 1; Histone Deacetylases; Male; Mice; Organ Specificity; Proto-Oncogene Proteins; Space Flight; Testis; Vas Deferens

2019
Regulation of DNA methylation levels in the process of oral mucosal regeneration in a rat oral ulcer model.
    Histology and histopathology, 2020, Volume: 35, Issue:3

    Topics: 5-Methylcytosine; Animals; Cell Proliferation; Disease Models, Animal; DNA Methylation; Epithelial Cells; Gene Expression Regulation; Immunohistochemistry; Ligands; Male; Mouth Mucosa; Oral Ulcer; Rats; Rats, Wistar; Regeneration; Wnt-5a Protein

2020
The clinical values of dysregulated DNA methylation and demethylation intermediates in acute lymphoblastic leukemia.
    Hematology (Amsterdam, Netherlands), 2019, Volume: 24, Issue:1

    Topics: 5-Methylcytosine; Adolescent; Adult; Aged; Area Under Curve; Biomarkers, Tumor; Cell Lineage; Child; Cytosine; Demethylation; DNA Methylation; DNA, Neoplasm; Female; Humans; Male; Middle Aged; Oxidation-Reduction; Precursor Cell Lymphoblastic Leukemia-Lymphoma; Remission Induction; ROC Curve; Young Adult

2019
Induction of DNA Hydroxymethylation Protects the Brain After Stroke.
    Stroke, 2019, Volume: 50, Issue:9

    Topics: 5-Methylcytosine; Age Factors; Animals; Brain; DNA; DNA-Binding Proteins; Epigenesis, Genetic; Infarction, Middle Cerebral Artery; Male; Mice; Proto-Oncogene Proteins; Stroke

2019
Genome-wide mapping of 5-hydroxymethylcytosines in circulating cell-free DNA as a non-invasive approach for early detection of hepatocellular carcinoma.
    Gut, 2019, Volume: 68, Issue:12

    Topics: 5-Methylcytosine; Biomarkers, Tumor; Carcinoma, Hepatocellular; Cell-Free Nucleic Acids; DNA, Neoplasm; Early Detection of Cancer; Female; Genome-Wide Association Study; Humans; Liver Neoplasms; Male; Middle Aged; Prospective Studies; ROC Curve

2019
5-hydroxymethylcytosine Marks Mammalian Origins Acting as a Barrier to Replication.
    Scientific reports, 2019, 07-30, Volume: 9, Issue:1

    Topics: 5-Methylcytosine; Cell Cycle; Cell Division; Cell Proliferation; DNA Replication; HeLa Cells; Humans; Replication Origin

2019
Vitamin C effects on 5-hydroxymethylcytosine and gene expression in osteoblasts and chondrocytes: Potential involvement of PHD2.
    PloS one, 2019, Volume: 14, Issue:8

    Topics: 5-Methylcytosine; Animals; Ascorbic Acid; Cell Differentiation; Cells, Cultured; Chondrocytes; Gene Expression; Hypoxia-Inducible Factor-Proline Dioxygenases; Mice; Osteoblasts

2019
New warning signs on the road: 5-hydroxymethylcytosine-based liquid biopsy for the early detection of hepatocellular carcinoma.
    Gut, 2019, Volume: 68, Issue:12

    Topics: 5-Methylcytosine; Carcinoma, Hepatocellular; Cell-Free Nucleic Acids; Humans; Liquid Biopsy; Liver Neoplasms

2019
Polymerization retardation isothermal amplification (PRIA): a strategy enables sensitively quantify genome-wide 5-methylcytosine oxides rapidly on handy instruments with nanoscale sample input.
    Nucleic acids research, 2019, 11-04, Volume: 47, Issue:19

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; DNA Methylation; DNA-Directed DNA Polymerase; Epigenomics; Genome; Humans; Mice; Oxides; Polymerase Chain Reaction; Polymerization; Rats

2019
The effects of TETs on DNA methylation and hydroxymethylation of mouse oocytes after vitrification and warming.
    Cryobiology, 2019, Volume: 90

    Topics: 5-Methylcytosine; Amino Acids, Dicarboxylic; Animals; Ascorbic Acid; Cryopreservation; Cryoprotective Agents; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryo Research; Female; Gene Expression; Mice; Oocytes; Proto-Oncogene Proteins; Vitrification

2019
TET2 catalyzes active DNA demethylation of the Sry promoter and enhances its expression.
    Scientific reports, 2019, 09-17, Volume: 9, Issue:1

    Topics: 5-Methylcytosine; Animals; Dioxygenases; DNA Demethylation; DNA-Binding Proteins; Female; Gene Expression Regulation, Developmental; Gonads; Male; Mice, Inbred C57BL; Mice, Inbred ICR; Mice, Transgenic; Promoter Regions, Genetic; Proto-Oncogene Proteins; Sex Determination Processes; Sex-Determining Region Y Protein; Steroidogenic Factor 1

2019
Prognostic implications of 5-hydroxymethylcytosines from circulating cell-free DNA in diffuse large B-cell lymphoma.
    Blood advances, 2019, 10-08, Volume: 3, Issue:19

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Cell-Free Nucleic Acids; Humans; Lymphoma, Large B-Cell, Diffuse; Middle Aged; Prognosis; Prospective Studies; Young Adult

2019
5-Hydroxymethylcytosines in Circulating Cell-Free DNA Reveal Vascular Complications of Type 2 Diabetes.
    Clinical chemistry, 2019, Volume: 65, Issue:11

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Biomarkers; Cell-Free Nucleic Acids; Diabetes Mellitus, Type 2; Diabetic Angiopathies; Humans; Male; Middle Aged; Risk Factors

2019
5-Hydroxymethylcytosine in cord blood and associations of DNA methylation with sex in newborns.
    Mutagenesis, 2019, 12-19, Volume: 34, Issue:4

    Topics: 5-Methylcytosine; Biomarkers; DNA Methylation; Epigenesis, Genetic; Epigenomics; Female; Fetal Blood; Humans; Infant, Newborn; Male; Sex Factors

2019
Co-Localization of DNA i-Motif-Forming Sequences and 5-Hydroxymethyl-cytosines in Human Embryonic Stem Cells.
    Molecules (Basel, Switzerland), 2019, Oct-08, Volume: 24, Issue:19

    Topics: 5-Methylcytosine; Base Composition; Cell Differentiation; Cell Proliferation; CpG Islands; DNA Methylation; Epigenesis, Genetic; G-Quadruplexes; Human Embryonic Stem Cells; Humans; Nanostructures; Nucleic Acid Conformation; Nucleotide Motifs; Transcription Initiation Site

2019
Temporal evolution of the microbiome, immune system and epigenome with disease progression in ALS mice.
    Disease models & mechanisms, 2019, 11-15, Volume: 13, Issue:2

    Topics: 5-Methylcytosine; Amyotrophic Lateral Sclerosis; Animals; Bacteria; Brain; Disease Progression; Epigenome; Feces; Female; Gastrointestinal Microbiome; Immune System; Inflammation; Leukocytes; Male; Mice, Inbred C57BL; Mice, Transgenic; Myeloid Cells; Phenotype; Phylogeny; Superoxide Dismutase-1; Time Factors

2019
The Detection of 5-Hydroxymethylcytosine in Neural Stem Cells and Brains of Mice.
    Journal of visualized experiments : JoVE, 2019, 09-19, Issue:151

    Topics: 5-Methylcytosine; Age Factors; Animals; Brain; Brain Chemistry; Cell Line; Cells, Cultured; DNA Methylation; Epigenesis, Genetic; Immunoblotting; Male; Mice; Mice, Inbred C57BL; Neural Stem Cells

2019
Global and region-specific post-transcriptional and post-translational modifications of bisphenol A in human prostate cancer cells.
    Environmental pollution (Barking, Essex : 1987), 2019, Volume: 255, Issue:Pt 2

    Topics: 5-Methylcytosine; Benzhydryl Compounds; Cell Line, Tumor; Cyclin D2; Cyclin-Dependent Kinase Inhibitor p16; DNA Methylation; Down-Regulation; Endocrine Disruptors; Epigenesis, Genetic; Gene Expression; Histone Code; Humans; Male; PC-3 Cells; Phenols; Promoter Regions, Genetic; Prostatic Neoplasms; Protein Processing, Post-Translational; Tissue Inhibitor of Metalloproteinase-3; Tumor Suppressor Proteins

2019
Ten-Eleven Translocation (TET) Enzymes Modulate the Activation of Dendritic Cells in Allergic Rhinitis.
    Frontiers in immunology, 2019, Volume: 10

    Topics: 5-Methylcytosine; Adult; Allergens; Antigens, Dermatophagoides; Cell Differentiation; Dendritic Cells; Female; Humans; Leukocytes, Mononuclear; Male; Mixed Function Oxygenases; Monocytes; Proto-Oncogene Proteins; Rhinitis, Allergic

2019
Hemimethylation of CpG dyads is characteristic of secondary DMRs associated with imprinted loci and correlates with 5-hydroxymethylcytosine at paternally methylated sequences.
    Epigenetics & chromatin, 2019, 10-17, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Animals; Calcium-Binding Proteins; CpG Islands; Cyclin-Dependent Kinase Inhibitor p57; DNA Methylation; Embryo, Mammalian; Genetic Loci; Genomic Imprinting; Liver; Mice; Mice, Inbred C57BL; RNA, Long Noncoding; snRNP Core Proteins

2019
Tet3 regulates cellular identity and DNA methylation in neural progenitor cells.
    Cellular and molecular life sciences : CMLS, 2020, Volume: 77, Issue:14

    Topics: 5-Methylcytosine; Animals; Apoptosis Regulatory Proteins; Brain; Cell Differentiation; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Gene Knockdown Techniques; Genomic Imprinting; Humans; Mice; Mouse Embryonic Stem Cells; Neural Stem Cells; Neurogenesis; Neurons; Promoter Regions, Genetic; RNA-Binding Proteins

2020
Are the 5-hydroxymethylcytosine-based wd-scores really superior over α-fetoprotein for the early diagnosis of hepatocellular carcinoma?
    Gut, 2020, Volume: 69, Issue:10

    Topics: 5-Methylcytosine; alpha-Fetoproteins; Carcinoma, Hepatocellular; Cell-Free Nucleic Acids; Early Diagnosis; Humans; Liver Cirrhosis; Liver Neoplasms

2020
Altered 5-Hydroxymethylcytosine Landscape in Primary Gastric Adenocarcinoma.
    DNA and cell biology, 2019, Volume: 38, Issue:12

    Topics: 5-Methylcytosine; Adenocarcinoma; Case-Control Studies; DNA Methylation; Epigenesis, Genetic; Genome, Human; Humans; Stomach Neoplasms

2019
Selective demethylation of two CpG sites causes postnatal activation of the Dao gene and consequent removal of D-serine within the mouse cerebellum.
    Clinical epigenetics, 2019, 10-28, Volume: 11, Issue:1

    Topics: 5-Methylcytosine; Animals; Animals, Newborn; Cerebellum; CpG Islands; D-Amino-Acid Oxidase; D-Aspartic Acid; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation, Developmental; High-Throughput Nucleotide Sequencing; Male; Mice; Sequence Analysis, DNA; Serine; Single Molecule Imaging; Transcriptional Activation

2019
Lactate-mediated epigenetic reprogramming regulates formation of human pancreatic cancer-associated fibroblasts.
    eLife, 2019, 11-01, Volume: 8

    Topics: 5-Methylcytosine; Animals; Cancer-Associated Fibroblasts; Carcinoma, Pancreatic Ductal; Cell Line, Tumor; Cell Proliferation; Cell Transformation, Neoplastic; Cellular Reprogramming; DNA Methylation; Epigenesis, Genetic; Humans; Ketoglutaric Acids; Lactic Acid; Mesenchymal Stem Cells; Mice; Neoplasm Invasiveness; Pancreatic Neoplasms; Receptors, CXCR4; Stromal Cells; Transcriptome

2019
Supplementation of vitamin C promotes early germ cell specification from human embryonic stem cells.
    Stem cell research & therapy, 2019, 11-15, Volume: 10, Issue:1

    Topics: 5-Methylcytosine; Ascorbic Acid; Cell Line; Epigenesis, Genetic; Genes, Reporter; Germ Cells; Human Embryonic Stem Cells; Humans; Positive Regulatory Domain I-Binding Factor 1

2019
Highly sensitive quantification of site-specific 5-hydroxymethylcytosine at single-base resolution by HpaII-mediated ligation PCR.
    Organic & biomolecular chemistry, 2019, 12-14, Volume: 17, Issue:46

    Topics: 5-Methylcytosine; DNA; Humans; Polymerase Chain Reaction

2019
Alzheimer's disease-associated (hydroxy)methylomic changes in the brain and blood.
    Clinical epigenetics, 2019, 11-27, Volume: 11, Issue:1

    Topics: 5-Methylcytosine; Age of Onset; Aged; Aged, 80 and over; Alzheimer Disease; Brain Chemistry; Disease Progression; DNA Methylation; Epigenesis, Genetic; Female; Humans; Intracellular Signaling Peptides and Proteins; Male; Oxytocin; Receptors, Nicotinic; Temporal Lobe

2019
Epigenetic modification of cytosines fine tunes the stability of i-motif DNA.
    Nucleic acids research, 2020, 01-10, Volume: 48, Issue:1

    Topics: 5-Methylcytosine; Cell Line; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Humans; Hydrogen-Ion Concentration; MCF-7 Cells; Nucleotide Motifs

2020
Discovery of a new predominant cytosine DNA modification that is linked to gene expression in malaria parasites.
    Nucleic acids research, 2020, 01-10, Volume: 48, Issue:1

    Topics: 5-Methylcytosine; Cytosine; DNA Methylation; DNA, Protozoan; Epigenesis, Genetic; Erythrocytes; Genome, Protozoan; High-Throughput Nucleotide Sequencing; Humans; Hydroxylation; Plasmodium falciparum; RNA, Messenger

2020
Electrochemiluminescence biosensor for DNA hydroxymethylation detection based on enzyme-catalytic covalent bonding reaction of -CH
    Biosensors & bioelectronics, 2020, Feb-15, Volume: 150

    Topics: 5-Methylcytosine; Animals; Biosensing Techniques; Cell Line; Chick Embryo; DNA Methylation; Electrochemical Techniques; Luminescent Measurements; Magnetite Nanoparticles; Oryza; Sulfhydryl Compounds

2020
Phosphorylation of Tet3 by cdk5 is critical for robust activation of BRN2 during neuronal differentiation.
    Nucleic acids research, 2020, 02-20, Volume: 48, Issue:3

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cyclin-Dependent Kinase 5; Cytidine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Gene Expression Regulation, Developmental; Histones; Mice; Mice, Knockout; Mouse Embryonic Stem Cells; Nerve Tissue Proteins; Neurogenesis; Neurons; Phosphorylation; POU Domain Factors; Promoter Regions, Genetic

2020
Ethnicity-specific and overlapping alterations of brain hydroxymethylome in Alzheimer's disease.
    Human molecular genetics, 2020, 01-01, Volume: 29, Issue:1

    Topics: 5-Methylcytosine; Aged; Aged, 80 and over; Alzheimer Disease; Basic Helix-Loop-Helix Transcription Factors; Brain; Computational Biology; DNA Methylation; Female; Humans; Hypoxia-Inducible Factor 1, alpha Subunit; Male; RNA-Seq

2020
5hmC-MIQuant: Ultrasensitive Quantitative Detection of 5-Hydroxymethylcytosine in Low-Input Cell-Free DNA Samples.
    Analytical chemistry, 2020, 01-07, Volume: 92, Issue:1

    Topics: 5-Methylcytosine; Animals; Cell Line; Cell-Free Nucleic Acids; Humans; Male; Mice; Rats

2020
Vitamin C treatment of embryos, but not donor cells, improves the cloned embryonic development in sheep.
    Reproduction in domestic animals = Zuchthygiene, 2020, Volume: 55, Issue:3

    Topics: 5-Methylcytosine; Animals; Antioxidants; Ascorbic Acid; Blastocyst; Cloning, Organism; Culture Media; DNA Methylation; Embryonic Development; Fibroblasts; Male; Nuclear Transfer Techniques; Sheep

2020
Genome-wide characterization of cytosine-specific 5-hydroxymethylation in normal breast tissue.
    Epigenetics, 2020, Volume: 15, Issue:4

    Topics: 5-Methylcytosine; Adolescent; Adult; Aged; Aged, 80 and over; CpG Islands; DNA Methylation; Epigenesis, Genetic; Epigenome; Female; Genetic Loci; Humans; Mammary Glands, Human; Middle Aged; Transcriptome

2020
Mass spectrometry reveals the presence of specific set of epigenetic DNA modifications in the Norway spruce genome.
    Scientific reports, 2019, 12-17, Volume: 9, Issue:1

    Topics: 5-Methylcytosine; Chromatography, High Pressure Liquid; Cytosine; DNA Methylation; Epigenesis, Genetic; Genome, Plant; Mass Spectrometry; Norway; Picea

2019
5-Hydroxymethylcytosine Profiles in Circulating Cell-Free DNA Associate with Disease Burden in Children with Neuroblastoma.
    Clinical cancer research : an official journal of the American Association for Cancer Research, 2020, 03-15, Volume: 26, Issue:6

    Topics: 5-Methylcytosine; Adolescent; Adult; Biomarkers, Tumor; Cell-Free Nucleic Acids; Child; Child, Preschool; DNA Methylation; Epigenomics; Female; Humans; Infant; Infant, Newborn; Male; Neoplasm Metastasis; Neuroblastoma; Prognosis; Young Adult

2020
Structural Insights into the Specific Recognition of 5-methylcytosine and 5-hydroxymethylcytosine by TAL Effectors.
    Journal of molecular biology, 2020, 02-14, Volume: 432, Issue:4

    Topics: 5-Methylcytosine; Amino Acid Sequence; Crystallography, X-Ray; DNA; Protein Binding; Protein Structure, Secondary; Repetitive Sequences, Amino Acid; Transcription Activator-Like Effectors

2020
Values of 5mC, 5hmC, and TET2 for identifying the presence and progression of breast precancerous lesion.
    Journal of clinical laboratory analysis, 2020, Volume: 34, Issue:5

    Topics: 5-Methylcytosine; Adult; Aged; Biomarkers, Tumor; Breast Neoplasms; Dioxygenases; DNA-Binding Proteins; Female; Humans; Immunohistochemistry; Ki-67 Antigen; Middle Aged; Precancerous Conditions; Proto-Oncogene Proteins; Receptor, ErbB-2

2020
Reply to 'Are the 5-hydroxymethylcytosine-based wd-scores really superior over α-fetoprotein for the early diagnosis of hepatocellular carcinoma?'
    Gut, 2020, Volume: 69, Issue:10

    Topics: 5-Methylcytosine; alpha-Fetoproteins; Biomarkers, Tumor; Carcinoma, Hepatocellular; Cell-Free Nucleic Acids; Early Diagnosis; Humans; Liver Neoplasms

2020
Ontogenic mRNA expression of RNA modification writers, erasers, and readers in mouse liver.
    PloS one, 2019, Volume: 14, Issue:12

    Topics: 5-Methylcytosine; Adenosine; AlkB Homolog 5, RNA Demethylase; Animals; Animals, Newborn; Embryo, Mammalian; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Guanosine; Liver; Male; Methyltransferases; Mice; Pseudouridine; RNA Helicases; RNA Processing, Post-Transcriptional; RNA-Seq; RNA, Messenger

2019
Downregulation of the DNA 5-hydroxymethylcytosine is involved in mitochondrial dysfunction and neuronal impairment in high fat diet-induced diabetic mice.
    Free radical biology & medicine, 2020, 02-20, Volume: 148

    Topics: 5-Methylcytosine; Animals; Diabetes Mellitus, Experimental; Diet, High-Fat; DNA; DNA Methylation; DNA-Binding Proteins; Down-Regulation; Mice; Mitochondria; Proto-Oncogene Proteins

2020
High-dose ascorbic acid synergizes with anti-PD1 in a lymphoma mouse model.
    Proceedings of the National Academy of Sciences of the United States of America, 2020, 01-21, Volume: 117, Issue:3

    Topics: 5-Methylcytosine; Animals; Antibodies, Monoclonal; Antineoplastic Agents; Ascorbic Acid; B7-H1 Antigen; CD8-Positive T-Lymphocytes; Cell Line, Tumor; Cell Survival; Combined Modality Therapy; Disease Models, Animal; Drug Synergism; Female; Granzymes; Immunotherapy; Lymphoma; Mice; Mice, Inbred BALB C; Programmed Cell Death 1 Receptor; Tumor Microenvironment

2020
Reduction of Tet2 exacerbates early stage Alzheimer's pathology and cognitive impairments in 2×Tg-AD mice.
    Human molecular genetics, 2020, 07-21, Volume: 29, Issue:11

    Topics: 5-Methylcytosine; Alzheimer Disease; Amyloid beta-Peptides; Animals; Brain; Cell Differentiation; Cognitive Dysfunction; Dioxygenases; Disease Models, Animal; DNA-Binding Proteins; Gene Expression Regulation; Hippocampus; Histone Deacetylase 1; Humans; Learning; Mice; Mice, Transgenic; Neural Stem Cells; Proto-Oncogene Proteins; RNA-Seq

2020
5-hydroxymethylcytosine and gene activity in mouse intestinal differentiation.
    Scientific reports, 2020, 01-17, Volume: 10, Issue:1

    Topics: 5-Methylcytosine; Adult Stem Cells; Animals; Cell Differentiation; Intestines; Mice

2020
5-Hydroxymethylcytosine signatures in circulating cell-free DNA as diagnostic and predictive biomarkers for coronary artery disease.
    Clinical epigenetics, 2020, 01-21, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Adult; Aged; Biomarkers; Cell-Free Nucleic Acids; Coronary Artery Disease; DNA; Female; Humans; Male; Middle Aged; Myocardial Infarction

2020
Differentiated Visualization of Single-Cell 5-Hydroxymethylpyrimidines with Microfluidic Hydrogel Encoding.
    Journal of the American Chemical Society, 2020, 02-12, Volume: 142, Issue:6

    Topics: 5-Methylcytosine; Breast Neoplasms; Cell Line, Tumor; DNA; Epigenesis, Genetic; Female; Humans; Hydrogels; Microfluidics; Neoplasm Invasiveness; Pentoxyl; Single-Cell Analysis

2020
Characterization of global 5-hydroxymethylcytosine in pediatric posterior fossa ependymoma.
    Clinical epigenetics, 2020, 01-28, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Adolescent; Brain Neoplasms; Carcinogenesis; Case-Control Studies; Cell Proliferation; Child; Child, Preschool; DNA Methylation; Ependymoma; Epigenomics; Female; Humans; Infant; Infratentorial Neoplasms; Ki-67 Antigen; Male; Prognosis; Proportional Hazards Models

2020
Hypomethylation of LINE-1 repeat elements and global loss of DNA hydroxymethylation in vapers and smokers.
    Epigenetics, 2020, Volume: 15, Issue:8

    Topics: 5-Methylcytosine; Adult; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3A; Female; Humans; Long Interspersed Nucleotide Elements; Male; Middle Aged; Tobacco Smoking; Vaping

2020
Genome-wide characterization of 5-hydoxymethylcytosine in melanoma reveals major differences with nevus.
    Genes, chromosomes & cancer, 2020, Volume: 59, Issue:6

    Topics: 5-Methylcytosine; 5' Untranslated Regions; Adult; Biomarkers, Tumor; CpG Islands; DNA Methylation; Female; Humans; Male; Melanoma; Middle Aged; Nevus

2020
Selective targeting of TET catalytic domain promotes somatic cell reprogramming.
    Proceedings of the National Academy of Sciences of the United States of America, 2020, 02-18, Volume: 117, Issue:7

    Topics: 5-Methylcytosine; Catalytic Domain; Cell Line; Cellular Reprogramming; Dioxygenases; DNA-Binding Proteins; Enzyme Inhibitors; Humans; Mixed Function Oxygenases; Proto-Oncogene Proteins

2020
Alterations in 5hmC level and genomic distribution in aging-related epigenetic drift in human adipose stem cells.
    Epigenomics, 2020, Volume: 12, Issue:5

    Topics: 5-Methylcytosine; Adipose Tissue; Aging; Binding Sites; Cellular Senescence; Dioxygenases; DNA Methylation; Epigenesis, Genetic; Epigenomics; Gene Expression Regulation; Genetic Drift; Humans; Protein Binding; Stem Cells

2020
TET2-mediated Cdkn2A DNA hydroxymethylation in midbrain dopaminergic neuron injury of Parkinson's disease.
    Human molecular genetics, 2020, 05-28, Volume: 29, Issue:8

    Topics: 5-Methylcytosine; Animals; Cyclin-Dependent Kinase Inhibitor p16; Dioxygenases; Disease Models, Animal; DNA Methylation; DNA-Binding Proteins; Dopaminergic Neurons; Epigenesis, Genetic; Humans; Male; Mesencephalon; Mice; Parkinson Disease; Proto-Oncogene Proteins

2020
Adipocyte-Induced FABP4 Expression in Ovarian Cancer Cells Promotes Metastasis and Mediates Carboplatin Resistance.
    Cancer research, 2020, 04-15, Volume: 80, Issue:8

    Topics: 5-Methylcytosine; Adipocytes; Animals; Antineoplastic Agents; Biphenyl Compounds; Carboplatin; Cell Line, Tumor; Cell Proliferation; Cell Survival; Clustered Regularly Interspaced Short Palindromic Repeats; Coculture Techniques; DNA Methylation; Down-Regulation; Drug Resistance, Neoplasm; Fatty Acid-Binding Proteins; Female; Gene Knockdown Techniques; Heterografts; Humans; Lipid Metabolism; Lipidomics; Mass Spectrometry; Metabolomics; Mice; Mice, Nude; Neoplasm Metastasis; Neoplasm Proteins; Omentum; Ovarian Neoplasms; Protein Array Analysis; Proteomics; Pyrazoles; Tumor Burden; Up-Regulation

2020
Epigenomic analysis of 5-hydroxymethylcytosine (5hmC) reveals novel DNA methylation markers for lung cancers.
    Neoplasia (New York, N.Y.), 2020, Volume: 22, Issue:3

    Topics: 5-Methylcytosine; Biomarkers, Tumor; Computational Biology; CpG Islands; Disease Susceptibility; DNA Methylation; Epigenesis, Genetic; Epigenomics; Gene Expression Profiling; Genetic Loci; Genetic Predisposition to Disease; Humans; Lung Neoplasms

2020
UHRF1-repressed 5'-hydroxymethylcytosine is essential for the male meiotic prophase I.
    Cell death & disease, 2020, 02-21, Volume: 11, Issue:2

    Topics: 5-Methylcytosine; Animals; CCAAT-Enhancer-Binding Proteins; Cell Line; DNA-Binding Proteins; Down-Regulation; Epigenesis, Genetic; Fertility; Infertility, Male; Male; Meiotic Prophase I; Mice, Inbred C57BL; Mice, Knockout; Proto-Oncogene Proteins; RNA Polymerase II; Signal Transduction; Spermatocytes; Spermatogenesis; Testis; Transcriptional Activation; Ubiquitin-Protein Ligases

2020
Peroxotungstate oxidation-mediated two-phase amplification system (POM-TPAS) for bisulfite-free quantification of locus-specific 5-hydroxymethylcytosine.
    Chemical communications (Cambridge, England), 2020, Mar-12, Volume: 56, Issue:21

    Topics: 5-Methylcytosine; DNA; Epoxy Compounds; Humans; Oxidation-Reduction; Tungsten Compounds

2020
Structural adaptation of vertebrate endonuclease G for 5-hydroxymethylcytosine recognition and function.
    Nucleic acids research, 2020, 04-17, Volume: 48, Issue:7

    Topics: 5-Methylcytosine; Animals; Binding Sites; DNA; DNA Cleavage; DNA, Cruciform; Endodeoxyribonucleases; Mice; Models, Molecular; Substrate Specificity

2020
Aberrant hydroxymethylation of
    Epigenetics, 2020, Volume: 15, Issue:8

    Topics: 5-Methylcytosine; Adult; Angiopoietin-Like Protein 4; Apoptosis; Cell Hypoxia; Cell Line; Cell Movement; DNA Methylation; Female; Fetal Growth Retardation; Humans; Hypoxia-Inducible Factor 1, alpha Subunit; Placenta; Pregnancy; Pregnancy, Twin; Promoter Regions, Genetic; Trophoblasts

2020
Accurate targeted long-read DNA methylation and hydroxymethylation sequencing with TAPS.
    Genome biology, 2020, 03-03, Volume: 21, Issue:1

    Topics: 5-Methylcytosine; Animals; Boron Compounds; Cells, Cultured; DNA; DNA Methylation; Hep G2 Cells; Humans; Mice; Mixed Function Oxygenases; Nanopore Sequencing; Oxidation-Reduction; Proto-Oncogene Proteins; Pyridines; Sequence Analysis, DNA

2020
Epigenetic modulation of AREL1 and increased HLA expression in brains of multiple system atrophy patients.
    Acta neuropathologica communications, 2020, 03-09, Volume: 8, Issue:1

    Topics: 5-Methylcytosine; Aged; Aged, 80 and over; Brain; Case-Control Studies; DNA Methylation; Epigenesis, Genetic; Epigenome; Female; Flow Cytometry; HLA Antigens; Humans; Killer Cells, Natural; Leukocytes, Mononuclear; Male; Middle Aged; Monocytes; Multiple System Atrophy; Prefrontal Cortex; T-Lymphocytes; Transcriptome; Ubiquitin-Protein Ligases

2020
Induction of DEAD Box helicase 5 in early adipogenesis is regulated by Ten-eleven translocation 2.
    Biochimica et biophysica acta. Molecular and cell biology of lipids, 2020, Volume: 1865, Issue:7

    Topics: 3T3-L1 Cells; 5-Methylcytosine; Adipogenesis; Animals; DEAD-box RNA Helicases; Dioxygenases; DNA-Binding Proteins; Epigenesis, Genetic; Mice; Proto-Oncogene Proteins

2020
Combined 5-hydroxymethylcytosine content of human leucocyte antigen-B and human leucocyte antigen-DQB1 as novel biomarker for anti-tuberculosis drug-induced liver injury.
    Basic & clinical pharmacology & toxicology, 2020, Volume: 127, Issue:3

    Topics: 5-Methylcytosine; Adult; Antitubercular Agents; Biomarkers; Case-Control Studies; Chemical and Drug Induced Liver Injury; DNA Methylation; Female; Genetic Predisposition to Disease; HLA-B Antigens; HLA-DQ beta-Chains; Humans; Male; Middle Aged; Tuberculosis

2020
Demethylation Status of Somatic DNA Extracted From Pituitary Neuroendocrine Tumors Indicates Proliferative Behavior.
    The Journal of clinical endocrinology and metabolism, 2020, 06-01, Volume: 105, Issue:6

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Biomarkers, Tumor; Case-Control Studies; Cell Proliferation; Dioxygenases; DNA (Cytosine-5-)-Methyltransferase 1; DNA Methylation; DNA-Binding Proteins; DNA, Neoplasm; Epigenesis, Genetic; Female; Follow-Up Studies; Humans; Male; Middle Aged; Neuroendocrine Tumors; Pituitary Neoplasms; Prognosis; Proto-Oncogene Proteins; Ubiquitin-Protein Ligases; Young Adult

2020
TET-Mediated Hypermethylation Primes SDH-Deficient Cells for HIF2α-Driven Mesenchymal Transition.
    Cell reports, 2020, 03-31, Volume: 30, Issue:13

    Topics: 5-Methylcytosine; Adult; Aged; Animals; Basic Helix-Loop-Helix Transcription Factors; Cell Hypoxia; Cell Line; Cell Line, Tumor; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Female; Gene Expression Regulation, Neoplastic; Gene Knockdown Techniques; Genome, Human; Humans; Male; Mesoderm; Mice, Nude; Middle Aged; Mutation; Neoplasm Metastasis; Phenotype; Polycomb Repressive Complex 2; Proto-Oncogene Proteins; Succinate Dehydrogenase

2020
Major gene expression changes and epigenetic remodelling in Nile tilapia muscle after just one generation of domestication.
    Epigenetics, 2020, Volume: 15, Issue:10

    Topics: 5-Methylcytosine; Animals; DNA Methylation; Domestication; Epigenesis, Genetic; Fish Proteins; Muscle, Skeletal; Selective Breeding; Tilapia

2020
Precise genomic mapping of 5-hydroxymethylcytosine via covalent tether-directed sequencing.
    PLoS biology, 2020, Volume: 18, Issue:4

    Topics: 5-Methylcytosine; Acetylation; Animals; Bacteriophage lambda; Cell Line; DNA Methylation; Embryonic Stem Cells; Genome; Histones; Lysine; Mice; Oligonucleotides; Reproducibility of Results; Sequence Analysis, DNA; Sulfites

2020
Nono deficiency compromises TET1 chromatin association and impedes neuronal differentiation of mouse embryonic stem cells.
    Nucleic acids research, 2020, 05-21, Volume: 48, Issue:9

    Topics: 5-Methylcytosine; Animals; Cells, Cultured; Chromatin; DNA-Binding Proteins; Gene Expression Regulation; Gene Knockout Techniques; Mice; Mouse Embryonic Stem Cells; Neurogenesis; Proto-Oncogene Proteins; RNA-Binding Proteins; RNA-Seq; Transcription, Genetic

2020
DNA demethylation is a driver for chick retina regeneration.
    Epigenetics, 2020, Volume: 15, Issue:9

    Topics: 5-Methylcytosine; Animals; Avian Proteins; Chick Embryo; Chromatin; Cytosine; Dioxygenases; DNA Methylation; Fibroblast Growth Factor 2; Histone Code; Regeneration; Retinal Pigment Epithelium

2020
PHLPP2 is a novel biomarker and epigenetic target for the treatment of vitamin C in pancreatic cancer.
    International journal of oncology, 2020, Volume: 56, Issue:5

    Topics: 5-Methylcytosine; Ascorbic Acid; Biomarkers, Tumor; Carcinoma, Pancreatic Ductal; Cell Line, Tumor; Cell Movement; Cell Proliferation; Cell Survival; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Humans; Pancreatic Neoplasms; Phosphoprotein Phosphatases; Prognosis; Promoter Regions, Genetic; Sodium-Coupled Vitamin C Transporters; Survival Analysis; Up-Regulation

2020
TET2 is involved in DNA hydroxymethylation, cell proliferation and inflammatory response in keratinocytes.
    Molecular medicine reports, 2020, Volume: 21, Issue:4

    Topics: 5-Methylcytosine; Apoptosis; Cell Cycle; Cell Proliferation; Cell Survival; Cyclin-Dependent Kinase Inhibitor p16; Cytokines; Dioxygenases; DNA Methylation; DNA-Binding Proteins; HaCaT Cells; Humans; Inflammation; Inflammation Mediators; Keratinocytes; Proto-Oncogene Proteins; RNA, Messenger

2020
Role of Chromatin Remodeling Genes and TETs in the Development of Human Midbrain Dopaminergic Neurons.
    Stem cell reviews and reports, 2020, Volume: 16, Issue:4

    Topics: 5-Methylcytosine; Adult; Aged; Ascorbic Acid; Cell Differentiation; Cell Line; Cell Lineage; Chromatin Assembly and Disassembly; Dioxygenases; DNA-Binding Proteins; Dopamine; Dopaminergic Neurons; Epigenesis, Genetic; Humans; Induced Pluripotent Stem Cells; Mesencephalon; Middle Aged; Models, Biological; Proto-Oncogene Proteins

2020
TET3 regulates DNA hydroxymethylation of neuroprotective genes following focal ischemia.
    Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism, 2021, Volume: 41, Issue:3

    Topics: 5-Methylcytosine; Animals; Dioxygenases; DNA Methylation; Female; Gene Expression Regulation; Infarction, Middle Cerebral Artery; Ischemia; Male; Mice; Mice, Inbred C57BL; Promoter Regions, Genetic; RNA Interference; RNA, Small Interfering

2021
Genome-wide 5-hydroxymethylcytosine (5hmC) emerges at early stage of in vitro differentiation of a putative hepatocyte progenitor.
    Scientific reports, 2020, 05-08, Volume: 10, Issue:1

    Topics: 5-Methylcytosine; Cell Differentiation; DNA Demethylation; DNA Methylation; Gene Expression Regulation, Developmental; Genome; Hepatocyte Nuclear Factor 4; Hepatocytes; Humans; Mixed Function Oxygenases; Promoter Regions, Genetic; Proto-Oncogene Proteins; Stem Cells

2020
TET3 controls the expression of the H3K27me3 demethylase Kdm6b during neural commitment.
    Cellular and molecular life sciences : CMLS, 2021, Volume: 78, Issue:2

    Topics: 5-Methylcytosine; Animals; Cells, Cultured; Dioxygenases; Embryonic Stem Cells; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Gene Knockdown Techniques; Jumonji Domain-Containing Histone Demethylases; Mice, Inbred C57BL; Neurogenesis; Promoter Regions, Genetic; Up-Regulation

2021
Ascorbic Acid Promotes Functional Restoration after Spinal Cord Injury Partly by Epigenetic Modulation.
    Cells, 2020, 05-25, Volume: 9, Issue:5

    Topics: 5-Methylcytosine; Animals; Ascorbic Acid; Axons; Contusions; Dioxygenases; Epigenesis, Genetic; Female; Motor Cortex; Rats, Sprague-Dawley; Recovery of Function; Spinal Cord; Spinal Cord Injuries

2020
HMCES Maintains Replication Fork Progression and Prevents Double-Strand Breaks in Response to APOBEC Deamination and Abasic Site Formation.
    Cell reports, 2020, 06-02, Volume: 31, Issue:9

    Topics: 5-Methylcytosine; Cell Line; Cell Nucleus; Chromatin; Cytidine Deaminase; Deamination; DNA Breaks, Double-Stranded; DNA Replication; DNA-(Apurinic or Apyrimidinic Site) Lyase; DNA-Binding Proteins; DNA-Directed DNA Polymerase; DNA, Single-Stranded; Endonucleases; Humans; Multifunctional Enzymes; Proteins; RNA Interference; RNA, Small Interfering; Uracil; Uracil-DNA Glycosidase

2020
Characteristics of iron status, oxidation response, and DNA methylation profile in response to occupational iron oxide nanoparticles exposure.
    Toxicology and industrial health, 2020, Volume: 36, Issue:3

    Topics: 5-Methylcytosine; Adult; Cross-Sectional Studies; DNA Methylation; Female; Ferric Compounds; Humans; Iron; Male; Metal Nanoparticles; Middle Aged; Occupational Exposure

2020
Resveratrol inhibits the tumor migration and invasion by upregulating TET1 and reducing TIMP2/3 methylation in prostate carcinoma cells.
    The Prostate, 2020, Volume: 80, Issue:12

    Topics: 5-Methylcytosine; Cell Line, Tumor; Cell Movement; DNA Methylation; HEK293 Cells; Humans; Male; Mixed Function Oxygenases; Neoplasm Invasiveness; PC-3 Cells; Prostatic Neoplasms; Proto-Oncogene Proteins; Resveratrol; Tissue Inhibitor of Metalloproteinase-2; Tissue Inhibitor of Metalloproteinase-3; Up-Regulation

2020
DNA methylation and hydroxymethylation have distinct genome-wide profiles related to axonal regeneration.
    Epigenetics, 2021, Volume: 16, Issue:1

    Topics: 5-Methylcytosine; Animals; Axons; DNA Methylation; Epigenesis, Genetic; Female; Male; Nerve Regeneration; Rats; Rats, Sprague-Dawley; Transcriptome

2021
MicroRNA22-5p targets ten-eleven translocation and regulates estrogen receptor 2 expression in infertile women with minimal/mild endometriosis during implantation window.
    PloS one, 2020, Volume: 15, Issue:7

    Topics: 3' Untranslated Regions; 5-Methylcytosine; Adult; Cells, Cultured; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryo Implantation; Endometriosis; Endometrium; Estrogen Receptor beta; Female; Gene Expression Regulation; Genes, Reporter; Humans; Infertility, Female; Luteal Phase; MicroRNAs; Promoter Regions, Genetic; Protein Transport; Proto-Oncogene Proteins; Stromal Cells; Young Adult

2020
Diminished expression of 5hmc in Reed-Sternberg cells in classical Hodgkin lymphoma is a common epigenetic marker.
    Leukemia research, 2020, Volume: 96

    Topics: 5-Methylcytosine; Biomarkers; DNA Methylation; Epigenesis, Genetic; Hodgkin Disease; Humans; Reed-Sternberg Cells

2020
Integrated epigenetic biomarkers in circulating cell-free DNA as a robust classifier for pancreatic cancer.
    Clinical epigenetics, 2020, 07-23, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Adenocarcinoma; Biomarkers, Tumor; Carcinoma, Pancreatic Ductal; Cell-Free Nucleic Acids; Epigenesis, Genetic; Female; Humans; Male; Middle Aged; Pancreatic Neoplasms; Reproducibility of Results; Sensitivity and Specificity

2020
Epigenetic marker expression is of limited diagnostic utility in spitzoid melanocytic neoplasms.
    Journal of cutaneous pathology, 2020, Volume: 47, Issue:12

    Topics: 5-Methylcytosine; Biomarkers, Tumor; Diagnosis, Differential; Epigenesis, Genetic; Female; Humans; Male; Melanoma; Nevus, Epithelioid and Spindle Cell; Skin Neoplasms

2020
In silico structural analysis of sequences containing 5-hydroxymethylcytosine reveals its potential as binding regulator for development, ageing and cancer-related transcription factors.
    Epigenetics, 2021, Volume: 16, Issue:5

    Topics: 5-Methylcytosine; Aging; DNA Methylation; G-Quadruplexes; Humans; Neoplasms; Transcription Factors

2021
Quantitative analysis of global 5-methyl- and 5-hydroxymethylcytosine in TET1 expressed HEK293T cells.
    Biosensors & bioelectronics, 2020, Nov-01, Volume: 167

    Topics: 5-Methylcytosine; Animals; Biosensing Techniques; Cytosine; DNA Methylation; HEK293 Cells; Humans; Mixed Function Oxygenases; Proto-Oncogene Proteins

2020
Changes in DNA 5-Hydroxymethylcytosine Levels and the Underlying Mechanism in Non-functioning Pituitary Adenomas.
    Frontiers in endocrinology, 2020, Volume: 11

    Topics: 5-Methylcytosine; Adenoma; Dioxygenases; DNA; DNA-Binding Proteins; Epigenesis, Genetic; Humans; Pituitary Neoplasms; Proto-Oncogene Proteins

2020
A Comparative Study on 5hmC Targeting Regulation of Neurons in AD Mice by Several Natural Compounds.
    BioMed research international, 2020, Volume: 2020

    Topics: 5-Methylcytosine; Alzheimer Disease; Animals; Cell Line, Tumor; Deoxyadenosines; Disease Models, Animal; Humans; Mice; Mice, Mutant Strains; Neurons; Resveratrol

2020
Quantification of DNA Modifications Using Two-Dimensional Ultraperformance Liquid Chromatography Tandem Mass Spectrometry (2D-UPLC-MS/MS).
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198

    Topics: 5-Methylcytosine; Animals; Chromatography, High Pressure Liquid; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Epigenomics; Hydrolysis; Tandem Mass Spectrometry; Zebrafish

2021
Immunohistochemical Detection of Modified Cytosine Bases in Rodent Brain.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198

    Topics: 5-Methylcytosine; Animals; Antibodies; Brain; Cell Nucleus; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Immunohistochemistry; Mice; Peroxidase; Rats; Rodentia

2021
Immunohistochemical Detection of 5-Hydroxymethylcytosine and 5-Carboxylcytosine in Sections of Zebrafish Embryos.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198

    Topics: 5-Methylcytosine; Animals; Antibodies; Cell Nucleus; Cytosine; Dioxygenases; DNA; DNA Methylation; Embryo, Nonmammalian; Immunohistochemistry; Zebrafish

2021
Immunochemical Detection of Modified Species of Cytosine in Plant Tissues.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198

    Topics: 5-Methylcytosine; Antibodies; Cell Nucleus; Cytosine; Dioxygenases; DNA; DNA Methylation; Epigenesis, Genetic; Fluorescent Dyes; Immunohistochemistry; Plants

2021
Antigen Retrieval for Immunostaining of Modified Cytosine Species.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198

    Topics: 5-Methylcytosine; Animals; Antibodies; Antigens; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Fluorescent Antibody Technique; Humans

2021
Analysis of 5-Hydroxymethyluracil Levels Using Flow Cytometry.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198

    Topics: 5-Methylcytosine; Chromatography, Liquid; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Flow Cytometry; Humans; Oxidation-Reduction; Pentoxyl; Single-Cell Analysis; Tandem Mass Spectrometry; Thymine

2021
Analysis of 5-Carboxylcytosine Distribution Using DNA Immunoprecipitation.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198

    Topics: 5-Methylcytosine; Animals; Chromatin Immunoprecipitation; Cytosine; DNA; DNA Methylation; Humans; Immunoprecipitation

2021
High-Resolution Analysis of 5-Hydroxymethylcytosine by TET-Assisted Bisulfite Sequencing.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198

    Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA; DNA Methylation; Epigenesis, Genetic; Epigenomics; Genome; Humans; Oxidation-Reduction; Sequence Analysis, DNA; Sulfites

2021
Oxidative Bisulfite Sequencing: An Experimental and Computational Protocol.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198

    Topics: 5-Methylcytosine; Animals; Computational Biology; Cytosine; Dioxygenases; DNA; DNA Methylation; High-Throughput Nucleotide Sequencing; Humans; Oxidation-Reduction; Oxidative Stress; Sequence Analysis, DNA; Sulfites

2021
Bisulfite-Free Sequencing of 5-Hydroxymethylcytosine with APOBEC-Coupled Epigenetic Sequencing (ACE-Seq).
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198

    Topics: 5-Methylcytosine; Animals; Computational Biology; Cytidine Deaminase; Cytosine; DNA; DNA Methylation; Epigenomics; Humans; Proteins; Sequence Analysis, DNA; Single Molecule Imaging; Sulfites

2021
Analyzing DNA-Immunoprecipitation Sequencing Data.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198

    Topics: 5-Methylcytosine; Animals; Computational Biology; CpG Islands; DNA; DNA Methylation; Epigenesis, Genetic; Epigenomics; Genome; High-Throughput Nucleotide Sequencing; Humans; Immunoprecipitation; Reproducibility of Results; Sequence Analysis, DNA

2021
Integrated Analysis of DNA Methylation, Hydroxymethylation, and Gene Expression Data Using ME-Class2.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Epigenomics; Gene Expression; Gene Silencing; Genome; Genomics; Humans; Machine Learning; Sequence Analysis, DNA

2021
bZIP Dimers CREB1, ATF2, Zta, ATF3|cJun, and cFos|cJun Prefer to Bind to Some Double-Stranded DNA Sequences Containing 5-Formylcytosine and 5-Carboxylcytosine.
    Biochemistry, 2020, 09-29, Volume: 59, Issue:38

    Topics: 5-Methylcytosine; Amino Acid Sequence; Animals; Basic-Leucine Zipper Transcription Factors; Cytosine; DNA; Mice; Protein Array Analysis; Protein Binding

2020
Role of TET1 and 5hmC in an Obesity-Linked Pathway Driving Cancer Stem Cells in Triple-Negative Breast Cancer.
    Molecular cancer research : MCR, 2020, Volume: 18, Issue:12

    Topics: 5-Methylcytosine; Animals; Cell Line, Tumor; Diet, High-Fat; Disease Models, Animal; DNA-Binding Proteins; Epigenesis, Genetic; Female; Gene Expression Regulation, Neoplastic; Humans; Hydrogen Peroxide; Mice; Mixed Function Oxygenases; Neoplastic Stem Cells; Obesity; Proto-Oncogene Proteins; Serine-Arginine Splicing Factors; Triple Negative Breast Neoplasms

2020
Mapping 5-Hydroxymethylcytosine (5hmC) Modifications in Skeletal Tissues Using High-Throughput Sequencing.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2221

    Topics: 5-Methylcytosine; Animals; DNA; DNA Methylation; High-Throughput Nucleotide Sequencing; Humans; Muscle, Skeletal

2021
Functional role of Tet-mediated RNA hydroxymethylcytosine in mouse ES cells and during differentiation.
    Nature communications, 2020, 10-02, Volume: 11, Issue:1

    Topics: 5-Methylcytosine; Animals; Antibody Specificity; Base Sequence; Cell Differentiation; Dioxygenases; DNA-Binding Proteins; Embryoid Bodies; Mice; Models, Biological; Mouse Embryonic Stem Cells; Pluripotent Stem Cells; Protein Binding; Proto-Oncogene Proteins; RNA; RNA Stability; RNA, Messenger; Transcriptome

2020
PRDM9 activity depends on HELLS and promotes local 5-hydroxymethylcytosine enrichment.
    eLife, 2020, 10-13, Volume: 9

    Topics: 5-Methylcytosine; Animals; Binding Sites; DNA Breaks, Double-Stranded; DNA Helicases; Endodeoxyribonucleases; HeLa Cells; Histone-Lysine N-Methyltransferase; Homologous Recombination; Humans; Male; Mice; Mice, Knockout; Proteomics; Spermatocytes; Testis

2020
Neonatal Sevoflurane Exposure Impairs Learning and Memory by the Hypermethylation of Hippocampal Synaptic Genes.
    Molecular neurobiology, 2021, Volume: 58, Issue:3

    Topics: 5-Methylcytosine; Animals; Animals, Newborn; Cognition; CpG Islands; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; Hippocampus; Memory; Models, Biological; Rats, Sprague-Dawley; Sevoflurane; Spatial Memory; Synapses

2021
Loss of 5-Hydroxymethylcytosine is an Epigenetic Hallmark of Thyroid Carcinomas with TERT Promoter Mutations.
    Endocrine pathology, 2020, Volume: 31, Issue:4

    Topics: 5-Methylcytosine; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Humans; Mutation; Promoter Regions, Genetic; Telomerase; Thyroid Cancer, Papillary; Thyroid Carcinoma, Anaplastic; Thyroid Neoplasms

2020
Selective loss of 5hmC promotes neurodegeneration in the mouse model of Alzheimer's disease.
    FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2020, Volume: 34, Issue:12

    Topics: 5-Methylcytosine; Alzheimer Disease; Animals; Astrocytes; Brain; Cell Line; Disease Models, Animal; DNA Methylation; Epigenesis, Genetic; Epigenomics; Genome; HEK293 Cells; Humans; Mice; Neurodegenerative Diseases; Neurons

2020
Detection of early stage pancreatic cancer using 5-hydroxymethylcytosine signatures in circulating cell free DNA.
    Nature communications, 2020, 10-19, Volume: 11, Issue:1

    Topics: 5-Methylcytosine; Adult; Biomarkers, Tumor; Cell-Free Nucleic Acids; Cohort Studies; DNA-Binding Proteins; Female; GATA4 Transcription Factor; Homeodomain Proteins; Humans; Male; Middle Aged; Neoplasm Staging; Nuclear Proteins; Pancreatic Neoplasms; TEA Domain Transcription Factors; Transcription Factors; Tumor Suppressor Proteins

2020
Identification of fetal unmodified and 5-hydroxymethylated CG sites in maternal cell-free DNA for non-invasive prenatal testing.
    Clinical epigenetics, 2020, 10-20, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Adult; Cell-Free Nucleic Acids; DNA Methylation; Down Syndrome; Epigenomics; Female; Fetal Diseases; Fetus; Genetic Testing; High-Throughput Nucleotide Sequencing; Humans; Male; Placenta; Pregnancy; Prenatal Diagnosis; Sensitivity and Specificity; Sequence Analysis, DNA; Trisomy

2020
5-Hydroxymethylcytosine signature in circulating cell-free DNA as a potential diagnostic factor for early-stage colorectal cancer and precancerous adenoma.
    Molecular oncology, 2021, Volume: 15, Issue:1

    Topics: 5-Methylcytosine; Adenoma; Adult; Aged; Cell-Free Nucleic Acids; Cluster Analysis; Colorectal Neoplasms; DNA, Neoplasm; Female; Genome, Human; Humans; Male; Middle Aged; Molecular Sequence Annotation; Neoplasm Staging; Precancerous Conditions

2021
Pairwise Proximity-Differentiated Visualization of Single-Cell DNA Epigenetic Marks.
    Angewandte Chemie (International ed. in English), 2021, 02-15, Volume: 60, Issue:7

    Topics: 5-Methylcytosine; Cell Line; Chromatin; Cytosine; DNA; Humans; Molecular Structure; Single-Cell Analysis

2021
DNA hydroxymethylation is associated with disease severity and persists at enhancers of oncogenic regions in multiple myeloma.
    Clinical epigenetics, 2020, 11-02, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Chromatin; Cyclin D1; Cyclin D2; DNA Methylation; Epigenesis, Genetic; Epigenomics; Female; Gene Expression Regulation, Neoplastic; Genome; Histone-Lysine N-Methyltransferase; Humans; Male; Middle Aged; Multiple Myeloma; Phenotype; Proto-Oncogene Proteins c-myc; Regulatory Sequences, Nucleic Acid; Repressor Proteins; Severity of Illness Index

2020
Downregulation of 5-hydroxymethylcytosine is associated with the progression of cervical intraepithelial neoplasia.
    PloS one, 2020, Volume: 15, Issue:11

    Topics: 5-Methylcytosine; Animals; Cytidine Deaminase; DNA (Cytosine-5-)-Methyltransferase 1; Down-Regulation; Female; Humans; Mice, Inbred C57BL; Minor Histocompatibility Antigens; Mixed Function Oxygenases; Proto-Oncogene Proteins; Tumor Suppressor Protein p53; Uterine Cervical Dysplasia; Uterine Cervical Neoplasms

2020
Photocaged 5-(Hydroxymethyl)pyrimidine Nucleoside Phosphoramidites for Specific Photoactivatable Epigenetic Labeling of DNA.
    Organic letters, 2020, 11-20, Volume: 22, Issue:22

    Topics: 5-Methylcytosine; Deoxycytidine; DNA; Epigenesis, Genetic; Epigenomics; Molecular Structure; Oligonucleotides; Organophosphorus Compounds; Pyrimidine Nucleosides; Uracil; Uridine

2020
Perinatal protein malnutrition results in genome-wide disruptions of 5-hydroxymethylcytosine at regions that can be restored to control levels by an enriched environment.
    Epigenetics, 2021, Volume: 16, Issue:10

    Topics: 5-Methylcytosine; Animals; DNA Methylation; Epigenesis, Genetic; Female; Male; Malnutrition; Mice

2021
Effects of caffeic acid on epigenetics in the brain of rats with chronic unpredictable mild stress.
    Molecular medicine reports, 2020, Volume: 22, Issue:6

    Topics: 5-Methylcytosine; Animals; Antidepressive Agents; Brain; Brain-Derived Neurotrophic Factor; Caffeic Acids; Catechol O-Methyltransferase; Depression; Depressive Disorder, Major; Disease Models, Animal; DNA Methylation; Epigenesis, Genetic; Epigenomics; Hippocampus; Male; Prefrontal Cortex; Rats; Rats, Wistar; Stress, Psychological

2020
5-Hydroxymethylation highlights the heterogeneity in keratinization and cell junctions in head and neck cancers.
    Clinical epigenetics, 2020, 11-17, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Cell Movement; DNA Methylation; Epigenesis, Genetic; Female; Gene Expression Regulation, Neoplastic; Genome-Wide Association Study; Head and Neck Neoplasms; Humans; Intercellular Junctions; Keratinocytes; Male; Middle Aged; Papillomaviridae; Papillomavirus Infections; Skin Neoplasms; Squamous Cell Carcinoma of Head and Neck

2020
Alterations of 5-hydroxymethylcytosines in circulating cell-free DNA reflect retinopathy in type 2 diabetes.
    Genomics, 2021, Volume: 113, Issue:1 Pt 1

    Topics: 5-Methylcytosine; Adult; Aged; Basic Helix-Loop-Helix Transcription Factors; Biomarkers; Cell-Free Nucleic Acids; Diabetes Mellitus, Type 2; Diabetic Retinopathy; Female; Humans; Immunoglobulins; Male; Middle Aged; RNA, Long Noncoding

2021
TET2 chemically modifies tRNAs and regulates tRNA fragment levels.
    Nature structural & molecular biology, 2021, Volume: 28, Issue:1

    Topics: 5-Methylcytosine; Animals; Cell Line; Dioxygenases; DNA-Binding Proteins; Embryonic Stem Cells; Gene Knock-In Techniques; Gene Knockout Techniques; Mass Spectrometry; Mice; Mice, Inbred C57BL; Mice, Knockout; Proto-Oncogene Proteins; RNA-Binding Proteins; RNA, Small Untranslated; RNA, Transfer

2021
A human tissue map of 5-hydroxymethylcytosines exhibits tissue specificity through gene and enhancer modulation.
    Nature communications, 2020, 12-02, Volume: 11, Issue:1

    Topics: 5-Methylcytosine; Chromosome Mapping; CpG Islands; Cytosine; DNA; DNA Methylation; Enhancer Elements, Genetic; Epigenesis, Genetic; Genome, Human; Histones; Humans; Organ Specificity; Transcription Factors; Transcriptional Activation

2020
5-Hydroxymethylcytosine Glucosylation-Triggered Helicase-Dependent Amplification-Based Fluorescent Biosensor for Sensitive Detection of β-Glucosyltransferase with Zero Background Signal.
    Analytical chemistry, 2020, 12-15, Volume: 92, Issue:24

    Topics: 5-Methylcytosine; Biocatalysis; Biosensing Techniques; Exodeoxyribonucleases; Fluorescence; Glucosyltransferases; Glycosylation; Kinetics; Limit of Detection

2020
TROP-2, 5hmC, and IDH1 Expression in Anaplastic Thyroid Carcinoma.
    International journal of surgical pathology, 2021, Volume: 29, Issue:4

    Topics: 5-Methylcytosine; Antibodies, Monoclonal, Humanized; Antigens, Neoplasm; Biomarkers, Tumor; Camptothecin; Cell Adhesion Molecules; Feasibility Studies; Humans; Immunoconjugates; Immunohistochemistry; Isocitrate Dehydrogenase; Molecular Targeted Therapy; Mutation; Patient Selection; Predictive Value of Tests; Prognosis; Thyroid Carcinoma, Anaplastic; Thyroid Gland; Thyroid Neoplasms

2021
Relative DNA Methylation and Demethylation Efficiencies during Postnatal Liver Development Regulate Hepatitis B Virus Biosynthesis.
    Journal of virology, 2021, 02-24, Volume: 95, Issue:6

    Topics: 5-Methylcytosine; Animals; Animals, Newborn; Demethylation; Dioxygenases; Disease Models, Animal; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Replication; DNA, Viral; Gene Expression Regulation, Developmental; Gene Expression Regulation, Viral; Hepatitis B virus; Hepatitis B, Chronic; Hepatocyte Nuclear Factors; Liver; Mice; Mice, Transgenic; RNA, Viral; Virus Replication

2021
Alterations in the Genomic Distribution of 5hmC in In Vivo Aged Human Skin Fibroblasts.
    International journal of molecular sciences, 2020, Dec-23, Volume: 22, Issue:1

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; CCCTC-Binding Factor; DNA Methylation; DNA-Directed RNA Polymerases; Female; Fibroblasts; Gene Expression Regulation, Developmental; Histones; Humans; Male; Mitochondrial Proteins; Neoplasm Proteins; Promoter Regions, Genetic; Skin Aging

2020
One-pot intramolecular cyclization of 5-hydroxymethylcytosine for sequencing DNA hydroxymethylation at single-base resolution.
    The Analyst, 2021, Feb-07, Volume: 146, Issue:3

    Topics: 5-Methylcytosine; Cyclization; Cytosine; DNA; DNA Methylation; Prospective Studies; Sequence Analysis, DNA

2021
Long first exons and epigenetic marks distinguish conserved pachytene piRNA clusters from other mammalian genes.
    Nature communications, 2021, 01-04, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Acetylation; Animals; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Evolution, Molecular; Exons; Histones; Introns; Male; Mammals; Mice, Inbred C57BL; Nuclear Proteins; Organ Specificity; Pachytene Stage; Promoter Regions, Genetic; RNA Splicing; RNA-Binding Proteins; RNA, Messenger; RNA, Small Interfering; Signal Transduction; Testis; Transcription, Genetic

2021
Label-Free and Template-Free Chemiluminescent Biosensor for Sensitive Detection of 5-Hydroxymethylcytosine in Genomic DNA.
    Analytical chemistry, 2021, 02-02, Volume: 93, Issue:4

    Topics: 5-Methylcytosine; Biosensing Techniques; Cell Line, Tumor; DNA; Humans; Luminescent Measurements

2021
Exercise Ameliorates Spinal Cord Injury by Changing DNA Methylation.
    Cells, 2021, 01-12, Volume: 10, Issue:1

    Topics: 5-Methylcytosine; Animals; Axons; Cell Polarity; DNA Methylation; Epigenesis, Genetic; Female; Hydroxylation; Inflammation; Macrophages; Motor Cortex; Nerve Regeneration; Physical Conditioning, Animal; Rats, Sprague-Dawley; Recovery of Function; Spinal Cord; Spinal Cord Injuries; Urinary Bladder, Neurogenic

2021
Crystal structures of the EVE-HNH endonuclease VcaM4I in the presence and absence of DNA.
    Nucleic acids research, 2021, 02-22, Volume: 49, Issue:3

    Topics: 5-Methylcytosine; Catalytic Domain; Crystallography, X-Ray; DNA; DNA Restriction Enzymes; DNA, Single-Stranded; Models, Molecular; Nucleotide Motifs; Protein Domains; Scattering, Small Angle; Vibrio; X-Ray Diffraction

2021
Subtraction-free and bisulfite-free specific sequencing of 5-methylcytosine and its oxidized derivatives at base resolution.
    Nature communications, 2021, 01-27, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Animals; Base Sequence; Mice; Mouse Embryonic Stem Cells; Oxidation-Reduction; Pyridines; Sequence Analysis, DNA; Sulfites

2021
Liquid biopsy by combining 5-hydroxymethylcytosine signatures of plasma cell-free DNA and protein biomarkers for diagnosis and prognosis of hepatocellular carcinoma.
    ESMO open, 2021, Volume: 6, Issue:1

    Topics: 5-Methylcytosine; Biomarkers; Carcinoma, Hepatocellular; Cell-Free Nucleic Acids; Humans; Liquid Biopsy; Liver Neoplasms; Neoplasm Recurrence, Local; Prognosis

2021
Experimental eye research / short communication format characterization of DNA hydroxymethylation in the ocular choroid.
    Experimental eye research, 2021, Volume: 205

    Topics: 5-Methylcytosine; Aged; Blotting, Western; Choroid; Chromatography, Liquid; Dioxygenases; DNA Methylation; Female; Fluorescent Antibody Technique; Gene Expression; Humans; Isocitrate Dehydrogenase; Male; Melanocytes; Real-Time Polymerase Chain Reaction; Tandem Mass Spectrometry; Tissue Donors

2021
An all-to-all approach to the identification of sequence-specific readers for epigenetic DNA modifications on cytosine.
    Nature communications, 2021, 02-04, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Cell Line; CpG Islands; DNA; Enhancer Elements, Genetic; Epigenesis, Genetic; Epigenomics; Gene Library; Human Embryonic Stem Cells; Humans; Recombinant Proteins; Upstream Stimulatory Factors

2021
Reduced hepatic global hydroxymethylation in mice treated with non-genotoxic carcinogens is transiently reversible with a methyl supplemented diet.
    Toxicology and applied pharmacology, 2021, 03-15, Volume: 415

    Topics: 5-Methylcytosine; Animal Feed; Animal Nutritional Physiological Phenomena; Animals; Carcinogenesis; Carcinogens; Clofibrate; Dietary Supplements; DNA Methylation; Down-Regulation; Epigenesis, Genetic; Female; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; Liver; Male; Methionine; Mice, Transgenic; Phenobarbital; Time Factors; Transcriptome

2021
TET-TDG Active DNA Demethylation at CpG and Non-CpG Sites.
    Journal of molecular biology, 2021, 04-16, Volume: 433, Issue:8

    Topics: 5-Methylcytosine; CpG Islands; Cytosine; Dioxygenases; DNA Demethylation; DNA Repair; DNA-Binding Proteins; Epigenesis, Genetic; Humans; Oxidation-Reduction; Proto-Oncogene Proteins; Thymine DNA Glycosylase

2021
5-Hydroxymethylcytosine profiles of cfDNA are highly predictive of R-CHOP treatment response in diffuse large B cell lymphoma patients.
    Clinical epigenetics, 2021, 02-11, Volume: 13, Issue:1

    Topics: 5-Methylcytosine; Adult; Aged; Antineoplastic Combined Chemotherapy Protocols; Biomarkers, Pharmacological; Cell-Free Nucleic Acids; Cohort Studies; Cyclophosphamide; DNA Demethylation; Doxorubicin; Female; Humans; Logistic Models; Lymphoma, Large B-Cell, Diffuse; Male; Middle Aged; Predictive Value of Tests; Prednisone; Rituximab; Sensitivity and Specificity; Vincristine

2021
Oxytocin prevents cue-induced reinstatement of oxycodone seeking: Involvement of DNA methylation in the hippocampus.
    Addiction biology, 2021, Volume: 26, Issue:6

    Topics: 5-Methylcytosine; Animals; Conditioning, Classical; Cues; DNA Methylation; Dose-Response Relationship, Drug; Hippocampus; Learning; Male; Memory; Narcotic-Related Disorders; Oxycodone; Oxytocin; Rats; Rats, Sprague-Dawley; RNA, Messenger

2021
TET2 is a component of the estrogen receptor complex and controls 5mC to 5hmC conversion at estrogen receptor cis-regulatory regions.
    Cell reports, 2021, 02-23, Volume: 34, Issue:8

    Topics: 5-Methylcytosine; Animals; Breast Neoplasms; Chromatin Assembly and Disassembly; Databases, Genetic; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Enhancer Elements, Genetic; Estrogen Receptor alpha; Estrogen Receptor Antagonists; Female; Fulvestrant; GATA3 Transcription Factor; Gene Expression Regulation, Neoplastic; Humans; MCF-7 Cells; Mice, Inbred NOD; Mice, SCID; Xenograft Model Antitumor Assays

2021
Genome-wide 5-Hydroxymethylcytosine Profiling Analysis Identifies MAP7D1 as A Novel Regulator of Lymph Node Metastasis in Breast Cancer.
    Genomics, proteomics & bioinformatics, 2021, Volume: 19, Issue:1

    Topics: 5-Methylcytosine; Breast Neoplasms; Epigenomics; Female; Humans; Lymphatic Metastasis; Microtubule-Associated Proteins; Mixed Function Oxygenases; Proto-Oncogene Proteins

2021
Loss of ten-eleven translocation 2 induces cardiac hypertrophy and fibrosis through modulating ERK signaling pathway.
    Human molecular genetics, 2021, 05-29, Volume: 30, Issue:10

    Topics: 5-Methylcytosine; Animals; Cardiomegaly; Dioxygenases; Disease Models, Animal; DNA Methylation; DNA-Binding Proteins; Fibrosis; Gene Expression Regulation; Heart; HSP70 Heat-Shock Proteins; Humans; MAP Kinase Signaling System; Mice; Myocytes, Cardiac; Phosphorylation; Transcriptome

2021
Aberrant Epigenetic Reprogramming in the First Cell Cycle of Bovine Somatic Cell Nuclear Transfer Embryos.
    Cellular reprogramming, 2021, Volume: 23, Issue:2

    Topics: 5-Methylcytosine; Animals; Cattle; Cell Cycle; Cell Nucleus; Cellular Reprogramming; DNA Methylation; Embryo, Mammalian; Embryonic Development; Epigenesis, Genetic; Fertilization in Vitro; Gene Expression Regulation, Developmental; Histones; Nuclear Transfer Techniques; Zygote

2021
Downregulation of 5-hydroxymethylcytosine is an early event in pancreatic tumorigenesis.
    The Journal of pathology, 2021, Volume: 254, Issue:3

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Carcinogenesis; Carcinoma, Pancreatic Ductal; Down-Regulation; Epigenesis, Genetic; Female; Gene Expression Regulation, Neoplastic; Humans; Male; Middle Aged; Mixed Function Oxygenases; Pancreatic Neoplasms; Proto-Oncogene Proteins

2021
[Roles of ten eleven translocation proteins family and 5-hydroxymethylcytosine in epigenetic regulation of stem cells and regenerative medicine].
    Beijing da xue xue bao. Yi xue ban = Journal of Peking University. Health sciences, 2021, Feb-22, Volume: 53, Issue:2

    Topics: 5-Methylcytosine; Animals; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Humans; Mixed Function Oxygenases; Prospective Studies; Proto-Oncogene Proteins; Regenerative Medicine; Stem Cells

2021
Solid-state nanopore analysis of human genomic DNA shows unaltered global 5-hydroxymethylcytosine content associated with early-stage breast cancer.
    Nanomedicine : nanotechnology, biology, and medicine, 2021, Volume: 35

    Topics: 5-Methylcytosine; Breast Neoplasms; DNA, Neoplasm; Female; Genome, Human; Humans; MCF-7 Cells; Nanopore Sequencing; Neoplasm Staging

2021
5-hydroxymethylcytosine is dynamically regulated during forebrain organoid development and aberrantly altered in Alzheimer's disease.
    Cell reports, 2021, 04-27, Volume: 35, Issue:4

    Topics: 5-Methylcytosine; Alzheimer Disease; Animals; Humans; Mice; Neurogenesis; Organoids; Prosencephalon

2021
TET2 Drives 5hmc Marking of GATA6 and Epigenetically Defines Pancreatic Ductal Adenocarcinoma Transcriptional Subtypes.
    Gastroenterology, 2021, Volume: 161, Issue:2

    Topics: 5-Methylcytosine; Animals; Antineoplastic Combined Chemotherapy Protocols; Ascorbic Acid; Biomarkers, Tumor; Carcinoma, Pancreatic Ductal; Cell Differentiation; Cell Line, Tumor; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Epigenome; Epigenomics; GATA6 Transcription Factor; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; Humans; Metformin; Mice, Nude; Mice, Transgenic; Pancreatic Neoplasms; Retrospective Studies; Smad4 Protein; Transcription, Genetic; Transcriptome; Wnt Signaling Pathway; Xenograft Model Antitumor Assays

2021
DNMT3B Is an Oxygen-Sensitive De Novo Methylase in Human Mesenchymal Stem Cells.
    Cells, 2021, 04-27, Volume: 10, Issue:5

    Topics: 5-Methylcytosine; Adult; Air; Basic Helix-Loop-Helix Transcription Factors; Cell Differentiation; Cells, Cultured; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3B; Female; Gene Expression Regulation; Humans; Hypoxia-Inducible Factor 1, alpha Subunit; Immunophenotyping; Male; Mesenchymal Stem Cells; Middle Aged; Mixed Function Oxygenases; Nanog Homeobox Protein; Octamer Transcription Factor-3; Oxygen; Promoter Regions, Genetic; Proto-Oncogene Proteins; RNA, Messenger; SOXB1 Transcription Factors; Up-Regulation

2021
Ten-eleven translocation protein 1 modulates medulloblastoma progression.
    Genome biology, 2021, 04-29, Volume: 22, Issue:1

    Topics: 5-Methylcytosine; Animals; Biomarkers, Tumor; Computational Biology; CpG Islands; Databases, Nucleic Acid; Disease Models, Animal; Disease Progression; Disease Susceptibility; DNA Methylation; Epigenesis, Genetic; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; Humans; Medulloblastoma; Mice; Mice, Transgenic; Mixed Function Oxygenases; Nucleotide Motifs; Prognosis; Proto-Oncogene Proteins

2021
Bisulphite miRNA-seq reveals widespread CpG and non-CpG 5-(hydroxy)methyl-Cytosine in human microRNAs.
    RNA biology, 2021, Volume: 18, Issue:12

    Topics: 5-Methylcytosine; CpG Islands; DNA Methyltransferase 3A; HEK293 Cells; HeLa Cells; High-Throughput Nucleotide Sequencing; Humans; Leukocytes, Mononuclear; MicroRNAs; Sequence Analysis, RNA

2021
Aba-Seq: High-Resolution Enzymatic Mapping of Genomic 5-Hydroxymethylcytosine.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2272

    Topics: 5-Methylcytosine; Animals; DNA Methylation; DNA Restriction Enzymes; Genome; Genomics; Mice; Mouse Embryonic Stem Cells; Sequence Analysis, DNA

2021
ELISA-Based Quantitation of Global 5hmC Levels.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2272

    Topics: 5-Methylcytosine; Antibodies; DNA; DNA Methylation; Enzyme-Linked Immunosorbent Assay; Genomics; Humans

2021
Avidin-Biotin ELISA-Based Detection of 5hmC.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2272

    Topics: 5-Methylcytosine; Antibodies; Avidin; Biotin; DNA; DNA Methylation; Enzyme-Linked Immunosorbent Assay; Genomics; Humans; Mixed Function Oxygenases; Proto-Oncogene Proteins

2021
Distinguishing Active Versus Passive DNA Demethylation Using Illumina MethylationEPIC BeadChip Microarrays.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2272

    Topics: 5-Methylcytosine; Computational Biology; Cytosine; DNA; DNA Demethylation; DNA Methylation; Epigenesis, Genetic; High-Throughput Nucleotide Sequencing; Humans; Microarray Analysis; Oxidation-Reduction; Sulfites

2021
Bioinformatic Estimation of DNA Methylation and Hydroxymethylation Proportions.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2272

    Topics: 5-Methylcytosine; Computational Biology; DNA; DNA Methylation; Epigenesis, Genetic; High-Throughput Nucleotide Sequencing; Humans; Oxidation-Reduction; Sulfites

2021
TAB-seq and ACE-seq Data Processing for Genome-Wide DNA hydroxymethylation Profiling.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2272

    Topics: 5-Methylcytosine; Computational Biology; DNA; DNA Methylation; Epigenesis, Genetic; Genome, Human; High-Throughput Nucleotide Sequencing; Humans; Mixed Function Oxygenases; Oxidation-Reduction; Proto-Oncogene Proteins; Sulfites

2021
High-Fidelity CRISPR/Cas9-Based Gene-Specific Hydroxymethylation.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2272

    Topics: 5-Methylcytosine; Chromatin; Computational Biology; CRISPR-Cas Systems; DNA; DNA Methylation; Epigenesis, Genetic; Gene Editing; High-Throughput Nucleotide Sequencing; Humans; Mixed Function Oxygenases; Oxidation-Reduction; Promoter Regions, Genetic; Proto-Oncogene Proteins; Sulfites

2021
Identifying Protein-(Hydroxy)Methylated DNA Interactions Using Quantitative Interaction Proteomics.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2272

    Topics: 5-Methylcytosine; Computational Biology; DNA; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Humans; Isotope Labeling; Oxidation-Reduction; Proteome

2021
Purification of TET Proteins.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2272

    Topics: 5-Methylcytosine; DNA; DNA Methylation; Humans; Mixed Function Oxygenases; Oxidation-Reduction; Proto-Oncogene Proteins; Substrate Specificity

2021
Pearl Necklacelike Strategy Enables Quantification of Global 5-Hydroxymethylcytosine and 5-Formylcytosine by Inductively Coupled Plasma-Atomic Emission Spectrometry.
    Analytical chemistry, 2021, 06-08, Volume: 93, Issue:22

    Topics: 5-Methylcytosine; Cytosine; Spectrum Analysis

2021
UHRF2 commissions the completion of DNA demethylation through allosteric activation by 5hmC and K33-linked ubiquitination of XRCC1.
    Molecular cell, 2021, 07-15, Volume: 81, Issue:14

    Topics: 5-Methylcytosine; Allosteric Regulation; Animals; Cell Line; Cell Line, Tumor; DNA Demethylation; DNA Methylation; DNA Repair; DNA Repair Enzymes; DNA-Binding Proteins; HEK293 Cells; Humans; MCF-7 Cells; Mice; Mice, Knockout; Promoter Regions, Genetic; Protein Binding; Ubiquitin-Protein Ligases; Ubiquitination; X-ray Repair Cross Complementing Protein 1

2021
Roles of TET and TDG in DNA demethylation in proliferating and non-proliferating immune cells.
    Genome biology, 2021, 06-22, Volume: 22, Issue:1

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Cell Proliferation; Cytosine; Dioxygenases; DNA; DNA Methylation; DNA-Binding Proteins; Enhancer Elements, Genetic; Gene Expression; Genetic Loci; Hematopoiesis; Interleukin-4; Isoenzymes; Lipopolysaccharides; Longevity; Macrophages; Mice; Mice, Knockout; T-Lymphocytes; Thymine DNA Glycosylase

2021
Ten-eleven translocation 2 modulates allergic inflammation by 5-hydroxymethylcytosine remodeling of immunologic pathways.
    Human molecular genetics, 2021, 10-13, Volume: 30, Issue:21

    Topics: 5-Methylcytosine; Animals; Biomarkers; Dioxygenases; Disease Models, Animal; Disease Susceptibility; DNA-Binding Proteins; Gene Expression Regulation; Hypersensitivity; Immunomodulation; Mice; Mice, Knockout; Proto-Oncogene Proteins; Signal Transduction

2021
Tet1 regulates epigenetic remodeling of the pericentromeric heterochromatin and chromocenter organization in DNA hypomethylated cells.
    PLoS genetics, 2021, Volume: 17, Issue:6

    Topics: 5-Methylcytosine; Animals; Cell Line; Centromere; DNA; DNA (Cytosine-5-)-Methyltransferase 1; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Female; Heterochromatin; Histones; Meiosis; Mice; Mouse Embryonic Stem Cells; Ovum; Polycomb Repressive Complex 1; Protein Isoforms; Proto-Oncogene Proteins; Ubiquitin-Protein Ligases

2021
Telomere Length in Chromosomally Normal and Abnormal Miscarriages and Ongoing Pregnancies and Its Association with 5-hydroxymethylcytosine Patterns.
    International journal of molecular sciences, 2021, Jun-21, Volume: 22, Issue:12

    Topics: 5-Methylcytosine; Abortion, Spontaneous; Case-Control Studies; Chorion; DNA Methylation; Female; Humans; Lymphocytes; Pregnancy; Pregnancy Trimester, First; Telomere; Telomere Homeostasis; Trophoblasts

2021
Stress modulates Ahi1-dependent nuclear localization of ten-eleven translocation protein 2.
    Human molecular genetics, 2021, 11-01, Volume: 30, Issue:22

    Topics: 5-Methylcytosine; Adaptor Proteins, Vesicular Transport; Animals; Cell Nucleus; Depression; Dioxygenases; DNA-Binding Proteins; Hippocampus; Mice; Mice, Knockout; Phenotype; Protein Binding; Protein Transport; Stress, Physiological

2021
Regulation of Rac1 transcription by histone and DNA methylation in diabetic retinopathy.
    Scientific reports, 2021, 07-08, Volume: 11, Issue:1

    Topics: 5-Methylcytosine; Animals; Diabetic Retinopathy; DNA (Cytosine-5-)-Methyltransferase 1; DNA Methylation; Gene Expression Regulation; Glucose; Histones; Humans; Methyltransferases; Mice, Inbred C57BL; Microvessels; Models, Biological; Promoter Regions, Genetic; Protein Processing, Post-Translational; rac1 GTP-Binding Protein; Repressor Proteins; Retinal Vessels; RNA, Messenger; Transcription, Genetic

2021
Tissue-specific 5-hydroxymethylcytosine landscape of the human genome.
    Nature communications, 2021, 07-12, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Base Sequence; Binding Sites; DNA Methylation; Gene Expression Regulation; Genome-Wide Association Study; Genome, Human; Humans; Organ Specificity; Phenotype; Polymorphism, Single Nucleotide; Quantitative Trait Loci; Transcription Factors

2021
MeCP2 is a microsatellite binding protein that protects CA repeats from nucleosome invasion.
    Science (New York, N.Y.), 2021, Jun-25, Volume: 372, Issue:6549

    Topics: 5-Methylcytosine; Animals; Cells, Cultured; Chromatin; Cytosine; Dinucleotide Repeats; DNA Methylation; Embryonic Stem Cells; Fibroblasts; Frontal Lobe; Methyl-CpG-Binding Protein 2; Mice; Microsatellite Repeats; Neurons; Nucleic Acid Conformation; Nucleosomes; Oxidation-Reduction; Protein Binding; Protein Domains; Rett Syndrome; Transcription, Genetic

2021
Proteome-Wide Profiling of Readers for DNA Modification.
    Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2021, Volume: 8, Issue:19

    Topics: 5-Methylcytosine; Animals; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Gene Expression Profiling; Humans; Mice; Mice, Inbred C57BL; Models, Animal; Proteome; Transcription Factors

2021
Ten-eleven translocation 1 mediated-DNA hydroxymethylation is required for myelination and remyelination in the mouse brain.
    Nature communications, 2021, 08-24, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Animals; Brain; Cell Cycle; Cell Differentiation; DNA; DNA Methylation; DNA-Binding Proteins; Genome; Mice; Mice, Knockout; Mice, Neurologic Mutants; Oligodendroglia; Organogenesis; Proto-Oncogene Proteins; Remyelination

2021
DNA 5-hydroxymethylcytosine in pediatric central nervous system tumors may impact tumor classification and is a positive prognostic marker.
    Clinical epigenetics, 2021, 09-19, Volume: 13, Issue:1

    Topics: 5-Methylcytosine; Adolescent; Central Nervous System Neoplasms; Child; Child, Preschool; Female; Gene Expression Regulation; Humans; Male; Neoplasm Staging; Pediatrics

2021
Rapid and Label-Free Detection of 5-Hydroxymethylcytosine in Genomic DNA Using an Au/ZnO Nanorods Hybrid Nanostructure-Based Electrochemical Sensor.
    Advanced healthcare materials, 2021, Volume: 10, Issue:22

    Topics: 5-Methylcytosine; Carcinoma, Hepatocellular; DNA; Genomics; Gold; Humans; Liver Neoplasms; Metal Nanoparticles; Nanotubes; Zinc Oxide

2021
iR5hmcSC: Identifying RNA 5-hydroxymethylcytosine with multiple features based on stacking learning.
    Computational biology and chemistry, 2021, Volume: 95

    Topics: 5-Methylcytosine; Algorithms; Computational Biology

2021
Cell-free DNA 5-hydroxymethylcytosine profiles of long non-coding RNA genes enable early detection and progression monitoring of human cancers.
    Clinical epigenetics, 2021, 10-24, Volume: 13, Issue:1

    Topics: 5-Methylcytosine; Cell-Free Nucleic Acids; Disease Progression; Early Detection of Cancer; Humans; Neoplasms; RNA, Long Noncoding

2021
Regulation of 5-Hydroxymethylcytosine by TET2 Contributes to Squamous Cell Carcinoma Tumorigenesis.
    The Journal of investigative dermatology, 2022, Volume: 142, Issue:5

    Topics: 5-Methylcytosine; Animals; Carcinoma, Squamous Cell; Cell Transformation, Neoplastic; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Humans; Mice; Proto-Oncogene Proteins; Skin Neoplasms

2022
Epigenetic Dysregulation of 5-hydroxymethylcytosine in Well-Differentiated Pancreatic Neuroendocrine Tumors.
    Applied immunohistochemistry & molecular morphology : AIMM, 2022, 02-01, Volume: 30, Issue:2

    Topics: 5-Methylcytosine; Epigenesis, Genetic; Female; Humans; Mitotic Index; Neuroendocrine Tumors; Pancreatic Neoplasms

2022
Loss of ten-eleven translocation 1 (TET1) expression as a diagnostic and prognostic biomarker of endometrial carcinoma.
    PloS one, 2021, Volume: 16, Issue:11

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Biomarkers, Tumor; Case-Control Studies; DNA Methylation; Down-Regulation; Endometrial Hyperplasia; Endometrial Neoplasms; Female; Gene Expression Regulation, Neoplastic; Humans; Middle Aged; Mixed Function Oxygenases; Neoplasm Grading; Prognosis; Proto-Oncogene Proteins; Retrospective Studies; Survival Analysis

2021
The Impact of the HydroxyMethylCytosine epigenetic signature on DNA structure and function.
    PLoS computational biology, 2021, Volume: 17, Issue:11

    Topics: 5-Methylcytosine; Binding Sites; Biophysical Phenomena; Computational Biology; DNA; DNA Methylation; Epigenesis, Genetic; Humans; Magnetic Resonance Spectroscopy; Models, Biological; Molecular Dynamics Simulation; Nucleic Acid Conformation

2021
5-Hydroxymethylcytosine Signatures in Circulating Cell-Free DNA as Diagnostic Biomarkers for Late-Onset Alzheimer's Disease.
    Journal of Alzheimer's disease : JAD, 2022, Volume: 85, Issue:2

    Topics: 5-Methylcytosine; Aged; Alzheimer Disease; Biomarkers; Case-Control Studies; Cell-Free Nucleic Acids; DNA Methylation; DNA, Neoplasm; Epigenesis, Genetic; Female; High-Throughput Nucleotide Sequencing; Humans; Male; Middle Aged

2022
Loss of 5-hydroxymethylcytosine expression is near-universal in B-cell lymphomas with variable mutations in epigenetic regulators.
    Haematologica, 2022, 04-01, Volume: 107, Issue:4

    Topics: 5-Methylcytosine; Epigenesis, Genetic; Humans; Lymphoma, B-Cell; Mutation

2022
5-Hydroxymethylcytosine-mediated active demethylation is required for mammalian neuronal differentiation and function.
    eLife, 2021, 12-17, Volume: 10

    Topics: 5-Methylcytosine; Animals; Cell Differentiation; Demethylation; Mice; Neurons

2021
Epigenetic Quantification of DNA 5-Hydroxymethylcytosine Using DNA Hybridization-Based Single-Molecule Immunofluorescent Imaging.
    Small methods, 2021, Volume: 5, Issue:5

    Topics: 5-Methylcytosine; Antibodies; DNA; DNA Probes; Fluorescent Dyes; Nucleic Acid Hybridization; Single Molecule Imaging

2021
Gene by environment interaction mouse model reveals a functional role for 5-hydroxymethylcytosine in neurodevelopmental disorders.
    Genome research, 2022, Volume: 32, Issue:2

    Topics: 5-Methylcytosine; Animals; DNA Methylation; Epigenesis, Genetic; Female; Gene-Environment Interaction; Membrane Proteins; Mice; Nerve Tissue Proteins; Neurodevelopmental Disorders; Pregnancy

2022
Integrated single-cell sequencing of 5-hydroxymethylcytosine and genomic DNA using scH&G-seq.
    STAR protocols, 2021, 12-17, Volume: 2, Issue:4

    Topics: 5-Methylcytosine; Cell Division; Cell Line; Computational Biology; DNA; Humans; Sequence Analysis, DNA; Single-Cell Analysis

2021
Navigating the hydroxymethylome: experimental biases and quality control tools for the tandem bisulfite and oxidative bisulfite Illumina microarrays.
    Epigenomics, 2022, Volume: 14, Issue:3

    Topics: 5-Methylcytosine; Bias; Computational Biology; DNA Methylation; Humans; Oligonucleotide Array Sequence Analysis; Quality Control

2022
Integrated 5-hydroxymethylcytosine and fragmentation signatures as enhanced biomarkers in lung cancer.
    Clinical epigenetics, 2022, 01-24, Volume: 14, Issue:1

    Topics: 5-Methylcytosine; Adult; Aged; Aged, 80 and over; Biomarkers, Tumor; China; DNA Fragmentation; DNA Methylation; Female; Humans; Lung Neoplasms; Male; Middle Aged

2022
Flanking sequences influence the activity of TET1 and TET2 methylcytosine dioxygenases and affect genomic 5hmC patterns.
    Communications biology, 2022, 01-24, Volume: 5, Issue:1

    Topics: 5-Methylcytosine; Animals; Base Sequence; Chromatography, High Pressure Liquid; Cloning, Molecular; Computational Biology; Dioxygenases; DNA-Binding Proteins; Gene Expression Regulation; Genomics; Mice; Proto-Oncogene Proteins; Tandem Mass Spectrometry

2022
Epigenetic Quantification of 5-Hydroxymethylcytosine Signatures
    Analytical chemistry, 2022, 02-22, Volume: 94, Issue:7

    Topics: 5-Methylcytosine; DNA; DNA, Catalytic; Epigenesis, Genetic

2022
Evolved DNA Duplex Readers for Strand-Asymmetrically Modified 5-Hydroxymethylcytosine/5-Methylcytosine CpG Dyads.
    Journal of the American Chemical Society, 2022, 02-23, Volume: 144, Issue:7

    Topics: 5-Methylcytosine; Directed Molecular Evolution; DNA; DNA Methylation; HEK293 Cells; Humans; Methyl-CpG-Binding Protein 2; Peptide Fragments; Protein Domains

2022
Loss of 5-hydroxymethylcytosine as a Poor Prognostic Factor for Primary Testicular Diffuse Large B-cell Lymphoma.
    International journal of medical sciences, 2022, Volume: 19, Issue:2

    Topics: 5-Methylcytosine; Aged; Biomarkers, Tumor; Humans; Immunohistochemistry; Lymphoma, Large B-Cell, Diffuse; Male; Middle Aged; Neoplasm Staging; Predictive Value of Tests; Prognosis; Proportional Hazards Models; Testicular Neoplasms; Testis

2022
N-3 polyunsaturated fatty acids prevent the D-galactose-induced cognitive impairment by up-regulating the levels of 5-hydroxymethylcytosine in the mouse brain.
    Food & function, 2022, Apr-04, Volume: 13, Issue:7

    Topics: 5-Methylcytosine; Animals; Brain; Cognitive Dysfunction; Fatty Acids, Omega-3; Galactose; Mice; Neurodegenerative Diseases

2022
Punicalagin Attenuates Neuronal Apoptosis by Upregulating 5-Hydroxymethylcytosine in the Diabetic Mouse Brain.
    Journal of agricultural and food chemistry, 2022, Apr-27, Volume: 70, Issue:16

    Topics: 5-Methylcytosine; AMP-Activated Protein Kinases; Animals; Apoptosis; Brain; Diabetes Mellitus; Hydrolyzable Tannins; Mice; Mice, Inbred C57BL

2022
5-Hydroxymethylcytosine (5hmC) at or near cancer mutation hot spots as potential targets for early cancer detection.
    BMC research notes, 2022, Apr-21, Volume: 15, Issue:1

    Topics: 5-Methylcytosine; DNA; DNA Methylation; Humans; Mutation; Neoplasms

2022
Value of 5-Hydroxymethylcytosine in HBV-Carrying High-Risk Hepatocellular Carcinoma Population: An Evaluation Based on Differential Analysis.
    Computational and mathematical methods in medicine, 2022, Volume: 2022

    Topics: 5-Methylcytosine; Carcinoma, Hepatocellular; Hepatitis B virus; Hepatitis B, Chronic; Humans; Liver Neoplasms

2022
Hydroxymethylation-Specific Ligation-Mediated Single Quantum Dot-Based Nanosensors for Sensitive Detection of 5-Hydroxymethylcytosine in Cancer Cells.
    Analytical chemistry, 2022, 07-12, Volume: 94, Issue:27

    Topics: 5-Methylcytosine; Animals; Biotin; DNA; DNA Methylation; Mammals; Neoplasms; Quantum Dots

2022
Magnetic multi-enzyme cascade combined with liquid chromatography tandem mass spectrometry for fast DNA digestion and quantitative analysis of 5-hydroxymethylcytosine in genome of human bladder cancer T24 cells induced by tetrachlorobenzoquinone.
    Journal of chromatography. A, 2022, Aug-02, Volume: 1676

    Topics: 5-Methylcytosine; Benzoquinones; Chromatography, High Pressure Liquid; DNA; Humans; Hydrocarbons, Chlorinated; Magnetic Phenomena; Nucleosides; Tandem Mass Spectrometry; Urinary Bladder Neoplasms

2022
Tight correlation of 5-hydroxymethylcytosine expression with the scarring damage of discoid lupus erythematosus.
    Lupus, 2022, Volume: 31, Issue:11

    Topics: 5-Methylcytosine; Cicatrix; Humans; Interferon Type I; Lupus Erythematosus, Cutaneous; Lupus Erythematosus, Discoid; Lupus Erythematosus, Systemic; Skin

2022
Cell-free DNA 5-hydroxymethylcytosine is an emerging marker of acute myeloid leukemia.
    Scientific reports, 2022, 07-20, Volume: 12, Issue:1

    Topics: 5-Methylcytosine; Cell-Free Nucleic Acids; Epigenomics; Humans; Leukemia, Myeloid, Acute

2022
iRNA5hmC-HOC: High-order correlation information for identifying RNA 5-hydroxymethylcytosine modification.
    Journal of bioinformatics and computational biology, 2022, Volume: 20, Issue:4

    Topics: 5-Methylcytosine; Algorithms; RNA; Software; Support Vector Machine

2022
R5hmCFDV: computational identification of RNA 5-hydroxymethylcytosine based on deep feature fusion and deep voting.
    Briefings in bioinformatics, 2022, 09-20, Volume: 23, Issue:5

    Topics: 5-Methylcytosine; Machine Learning; Neural Networks, Computer; Nucleotides; RNA

2022
5-Hydroxymethylcytosine profiles in plasma cell-free DNA reflect molecular characteristics of diabetic kidney disease.
    Frontiers in endocrinology, 2022, Volume: 13

    Topics: 5-Methylcytosine; Animals; Cell-Free Nucleic Acids; Diabetes Mellitus; Diabetic Nephropathies; Humans; Mice; Myeloid Differentiation Factor 88

2022
Genome-wide profiling of 5-hydroxymethylcytosines in circulating cell-free DNA reveals population-specific pathways in the development of multiple myeloma.
    Journal of hematology & oncology, 2022, 08-16, Volume: 15, Issue:1

    Topics: 5-Methylcytosine; Cell-Free Nucleic Acids; Humans; Monoclonal Gammopathy of Undetermined Significance; Multiple Myeloma

2022
Regional gain and global loss of 5-hydroxymethylcytosine coexist in genitourinary cancers and regulate different oncogenic pathways.
    Clinical epigenetics, 2022, 09-20, Volume: 14, Issue:1

    Topics: 5-Methylcytosine; Ascorbic Acid; Carcinogenesis; DNA; DNA Methylation; Fibrin; Humans; Magnesium; Male; Phosphates; Prostatic Neoplasms; Urogenital Neoplasms

2022
Locus-Specific Enrichment Analysis of 5-Hydroxymethylcytosine Reveals Novel Genes Associated with Breast Carcinogenesis.
    Cells, 2022, 09-20, Volume: 11, Issue:19

    Topics: 5-Methylcytosine; Breast Neoplasms; Cell Transformation, Neoplastic; Cytosine; DNA, Intergenic; Female; Humans; Untranslated Regions

2022
The 5-Hydroxymethylcytosine Landscape of Prostate Cancer.
    Cancer research, 2022, 11-02, Volume: 82, Issue:21

    Topics: 5-Methylcytosine; Biopsy; Humans; Male; Prostate; Prostatic Neoplasms

2022
Identifying 5-Hydroxymethylcytosine without Sequence Specificity Using MOF-Derived MnO
    Analytical chemistry, 2022, 11-29, Volume: 94, Issue:47

    Topics: 5-Methylcytosine; Biosensing Techniques; DNA; Electrochemical Techniques; Limit of Detection; Luminescent Measurements; Metal-Organic Frameworks

2022
Noninvasive detection of brain gliomas using plasma cell-free DNA 5-hydroxymethylcytosine sequencing.
    International journal of cancer, 2023, 04-15, Volume: 152, Issue:8

    Topics: 5-Methylcytosine; Brain; Brain Neoplasms; Glioma; Humans; Isocitrate Dehydrogenase; Mutation

2023
Spurious transcription causing innate immune responses is prevented by 5-hydroxymethylcytosine.
    Nature genetics, 2023, Volume: 55, Issue:1

    Topics: 5-Methylcytosine; Asthma; DNA Methylation; Humans; Immunity, Innate; Inflammation

2023
5-hydroxymethylcytosine stabilizes transcription by preventing aberrant initiation in gene bodies.
    Nature genetics, 2023, Volume: 55, Issue:1

    Topics: 5-Methylcytosine; Cytosine; DNA Methylation

2023
5-Methylcytosine and 5-Hydroxymethylcytosine in Scrapie-Infected Sheep and Mouse Brain Tissues.
    International journal of molecular sciences, 2023, Jan-13, Volume: 24, Issue:2

    Topics: 5-Methylcytosine; Animals; Brain; DNA Methylation; DNA Methyltransferase 3B; Epigenesis, Genetic; Histone Deacetylase 2; Mice; Prion Diseases; Prions; Scrapie; Sheep

2023
Loss of 5-hydroxymethylcytosine induces chemotherapy resistance in hepatocellular carcinoma via the 5-hmC/PCAF/AKT axis.
    Cell death & disease, 2023, 02-02, Volume: 14, Issue:2

    Topics: 5-Methylcytosine; Carcinoma, Hepatocellular; Humans; Liver Neoplasms; Proto-Oncogene Proteins c-akt

2023
EBS-seq: enrichment-based method for accurate analysis of 5-hydroxymethylcytosine at single-base resolution.
    Clinical epigenetics, 2023, 03-01, Volume: 15, Issue:1

    Topics: 5-Methylcytosine; Colorectal Neoplasms; DNA Methylation; HEK293 Cells; Humans

2023
Global DNA 5-hydroxymethylcytosine level and its chromosomal distribution in four rye species.
    Journal of experimental botany, 2023, 06-27, Volume: 74, Issue:12

    Topics: 5-Methylcytosine; Chromosomes; Cytosine; DNA; DNA Methylation; Secale

2023
Genome-Wide Mapping Implicates 5-Hydroxymethylcytosines in Diabetes Mellitus and Alzheimer's Disease.
    Journal of Alzheimer's disease : JAD, 2023, Volume: 93, Issue:3

    Topics: 5-Methylcytosine; Alzheimer Disease; Cell-Free Nucleic Acids; Diabetes Mellitus; DNA Methylation; Humans

2023
The link between 5-hydroxymethylcytosine and DNA demethylation in early embryos.
    Epigenomics, 2023, Volume: 15, Issue:6

    Topics: 5-Methylcytosine; DNA Demethylation; DNA Methylation; Embryonic Development; Humans

2023
Decrease of 5-hydroxymethylcytosine in hepatitis B virus-related hepatocellular carcinoma: A cross-sectional study.
    Medicine, 2023, Jun-02, Volume: 102, Issue:22

    Topics: 5-Methylcytosine; Carcinoma, Hepatocellular; Cross-Sectional Studies; Cytosine; DNA Methylation; Hepatitis B virus; Humans; Liver Neoplasms; Mixed Function Oxygenases; Proto-Oncogene Proteins

2023
Classification of Acute Myeloid Leukemia by Cell-Free DNA 5-Hydroxymethylcytosine.
    Genes, 2023, 05-28, Volume: 14, Issue:6

    Topics: 5-Methylcytosine; Humans; Leukemia, Myeloid, Acute; Proto-Oncogene Proteins

2023
PETCH-DB: a Portal for Exploring Tissue-specific and Complex disease-associated 5-Hydroxymethylcytosines.
    Database : the journal of biological databases and curation, 2023, 06-10, Volume: 2023

    Topics: 5-Methylcytosine; Biomedical Research; Cytosine; Databases, Factual; Humans

2023
PETCH-DB: a Portal for Exploring Tissue-specific and Complex disease-associated 5-Hydroxymethylcytosines.
    Database : the journal of biological databases and curation, 2023, 06-10, Volume: 2023

    Topics: 5-Methylcytosine; Biomedical Research; Cytosine; Databases, Factual; Humans

2023
Chemo-Enzymatic Fluorescence Labeling Of Genomic DNA For Simultaneous Detection Of Global 5-Methylcytosine And 5-Hydroxymethylcytosine.
    Chembiochem : a European journal of chemical biology, 2023, 10-17, Volume: 24, Issue:20

    Topics: 5-Methylcytosine; DNA; DNA Methylation; Fluorescence; Genomics; Humans; Leukocytes, Mononuclear

2023
Cell-free DNA 5-hydroxymethylcytosine is highly sensitive for MRD assessment in acute myeloid leukemia.
    Clinical epigenetics, 2023, 08-24, Volume: 15, Issue:1

    Topics: 5-Methylcytosine; Cell-Free Nucleic Acids; DNA Methylation; Humans; Leukemia, Myeloid, Acute

2023