1-(4-bromoacetamidobenzyl)edta and edetic acid

1-(4-bromoacetamidobenzyl)edta has been researched along with edetic acid in 47 studies

Compound Research Comparison

Studies (1-(4-bromoacetamidobenzyl)edta)	Trials (1-(4-bromoacetamidobenzyl)edta)	Recent Studies (post-2010) (1-(4-bromoacetamidobenzyl)edta)	Studies (edetic acid)	Trials (edetic acid)	Recent Studies (post-2010) (edetic acid)
48	0	5	27,553	629	3,970

Protein Interaction Comparison

Protein	Taxonomy	1-(4-bromoacetamidobenzyl)edta (IC50)	edetic acid (IC50)
Amyloid-beta precursor protein	Homo sapiens (human)		7.7
Beta-lactamase VIM-1	Pseudomonas aeruginosa		9.3

Research

Studies (47)

Timeframe	Studies, this research(%)	All Research%
pre-1990	4 (8.51)	18.7374
1990's	15 (31.91)	18.2507
2000's	23 (48.94)	29.6817
2010's	5 (10.64)	24.3611
2020's	0 (0.00)	2.80

Authors

Authors	Studies
Goodwin, DA; Haseman, MK; Kaminski, MS; Levy, R; McCall, MJ; Meares, CF; Wensel, TG	1
Richard, MD; Thakur, ML; White, FW	1
Diamanti, C; Goodwin, D; Lai, C; Martin, B; McCall, M; McTigue, M; Meares, C; Torti, F	1
Diamanti, CI; Goodwin, DA; McCall, MJ; McTigue, M; Meares, CF; Reardan, DT	1
Gennis, RB; Ghaim, JB; Greiner, DP; Meares, CF	1
Joseph, S; Noller, HF	2
Heilek, GM; Noller, HF	2
Ishihama, A; Kimura, M; Meares, CF; Murakami, K; Owens, JT	1
Joseph, S; Noller, HF; Weiser, B	1
Greiner, DP; Ishihama, A; Meares, CF; Miyake, R; Murakami, K; Owens, JT; Ozoline, ON	1
Lieberman, KR; Noller, HF	1
Bown, JA; Busby, SJ; Fujita, N; Ishihama, A; Meares, CF; Minchin, SD; Owens, JT	1
Joseph, S; Noller, HF; O'Brien, B; O'Brien, TW; Samaha, RR	1
Culver, GM; Heilek, GM; Noller, HF	1
Datwyler, SA; Meares, CF; Traviglia, SL	1
Fox, RO; Hall, KB	1
Holmberg, L; Noller, HF	1
Bown, JA; Colland, F; Fujita, N; Ishihama, A; Kolb, A; Kotlarz, D; Meares, CF	1
Buck, M; Fujita, N; Ishihama, A; Wigneshweraraj, SR	1
Culver, GM; Noller, HF	1
Hwang, I; Kustu, S; Lee, J; Meares, C; Owens, JT	1
Datwyler, SA; Meares, CF	2
Buck, M; Chaney, MK; Ishihama, A; Wigneshweraraj, SR	1
Beal, PA; Spanggord, RJ	1
Colland, F; Fujita, N; Ishihama, A; Kolb, A	1
Kent, OA; MacMillan, AM	1
Brieba, LG; Mukherjee, S; Sousa, R	1
Gershon, PD; Johnson, L	1
Buck, M; Burrows, PC; Ishihama, A; Severinov, K; Wigneshweraraj, SR	1
Datwyler, SA; Ishihama, A; Meares, CF; Owens, J; Schmidt, BD	1
Barnard, AM; Busby, SJ; Green, J; Lee, DJ; Lloyd, GS	1
Chen, HT; Hahn, S	1
Hartmuth, K; Lührmann, R; Rhode, BM; Westhof, E	1
Dönmez, G; Hartmuth, K; Kastner, B; Lührmann, R; Will, CL	1
Anderson, DL; Atz, R; Gao, J; Grimes, S; Ma, S	1
Himeno, H; Kurita, D; Muto, A; Sasaki, R	1
Hori, H; Ochi, A	1
Kumar, A; Moran, CP	1
Barrios, B; Cheal, SM; Kalani, AK; Meares, CF; Miao, Z; Ng, M	1
Pugh, RA; Spies, M; Wu, CG	1
Banerjee, R; Ranjan, A; Sen, R; Sen, U; Sharma, S	1
Hinnebusch, AG; Nanda, J; Saini, AK; Shin, BS; Zhang, F	1
Hinton, D; Hsieh, ML; James, T; Knipling, L	1
Chevalier, C; Duval, M; Marenna, A; Marzi, S	1

Reviews

1 review(s) available for 1-(4-bromoacetamidobenzyl)edta and edetic acid

Article	Year
Artificial iron-dependent proteases. Metal ions in biological systems, 2001, Volume: 38 Topics: Animals; Bacterial Proteins; Binding Sites; Blotting, Western; Chelating Agents; Cross-Linking Reagents; Edetic Acid; Electrophoresis, Polyacrylamide Gel; Escherichia coli; Gene Expression Regulation, Bacterial; Hydrolysis; Iron; Iron Chelating Agents; Isothiocyanates; Lysine; Macromolecular Substances; Models, Molecular; Molecular Structure; Organometallic Compounds; Peptide Fragments; Protein Conformation; Protein Footprinting; Proteins; Rabbits; RNA Polymerase I; Sigma Factor	2001

Article

Year

Artificial iron-dependent proteases.

Metal ions in biological systems, 2001, Volume: 38

Topics: Animals; Bacterial Proteins; Binding Sites; Blotting, Western; Chelating Agents; Cross-Linking Reagents; Edetic Acid; Electrophoresis, Polyacrylamide Gel; Escherichia coli; Gene Expression Regulation, Bacterial; Hydrolysis; Iron; Iron Chelating Agents; Isothiocyanates; Lysine; Macromolecular Substances; Models, Molecular; Molecular Structure; Organometallic Compounds; Peptide Fragments; Protein Conformation; Protein Footprinting; Proteins; Rabbits; RNA Polymerase I; Sigma Factor

2001

Other Studies

46 other study(ies) available for 1-(4-bromoacetamidobenzyl)edta and edetic acid

Article	Year
Metabolizable 111In chelate conjugated anti-idiotype monoclonal antibody for radioimmunodetection of lymphoma in mice. European journal of nuclear medicine, 1986, Volume: 12, Issue:9 Topics: Animals; Antibodies, Anti-Idiotypic; Antibodies, Monoclonal; Chelating Agents; Edetic Acid; Ethylenediamines; Immunoglobulin Idiotypes; Indium; Liver; Lymphoma; Metabolic Clearance Rate; Mice; Mice, Inbred C3H; Radioisotopes; Radionuclide Imaging; Rats; Spleen; Succinimides	1986
Monoclonal antibodies as agents for selective radiolabeling of human neutrophils. Journal of nuclear medicine : official publication, Society of Nuclear Medicine, 1988, Volume: 29, Issue:11 Topics: Antibodies, Monoclonal; Chelating Agents; Edetic Acid; Ethylenediamines; Humans; Indium Radioisotopes; Isotope Labeling; Neutrophils; Pentetic Acid; Technetium	1988
Use of specific antibody for rapid clearance of circulating blood background from radiolabeled tumor imaging proteins. European journal of nuclear medicine, 1984, Volume: 9, Issue:5 Topics: Animals; Antibody Specificity; Chelating Agents; Dogs; Edetic Acid; Half-Life; Humans; Immunoglobulin G; Mice; Mice, Inbred BALB C; Neoplasms; Radionuclide Imaging; Time Factors; Transferrin	1984
Conjugation of antibodies with bifunctional chelating agents: isothiocyanate and bromoacetamide reagents, methods of analysis, and subsequent addition of metal ions. Analytical biochemistry, 1984, Volume: 142, Issue:1 Topics: Animals; Antibodies, Monoclonal; Antibody Affinity; B-Lymphocytes; Chelating Agents; Chromatography, High Pressure Liquid; Chromatography, Thin Layer; Cobalt Radioisotopes; Cross-Linking Reagents; Edetic Acid; Indium; Lymph Nodes; Magnetic Resonance Spectroscopy; Metals; Mice; Mice, Inbred BALB C; Protein Binding; Radioisotopes; Spectrophotometry, Infrared; Spectrophotometry, Ultraviolet	1984
Proximity mapping the surface of a membrane protein using an artificial protease: demonstration that the quinone-binding domain of subunit I is near the N-terminal region of subunit II of cytochrome bd. Biochemistry, 1995, Sep-12, Volume: 34, Issue:36 Topics: Amino Acid Sequence; Benzoquinones; Cytochrome b Group; Cytochromes; Edetic Acid; Electron Transport Chain Complex Proteins; Endopeptidases; Escherichia coli; Escherichia coli Proteins; Hydrolysis; Membrane Proteins; Molecular Sequence Data; Mutagenesis, Site-Directed; Organometallic Compounds; Oxidoreductases; Plasmids; Protein Binding	1995
Mapping the rRNA neighborhood of the acceptor end of tRNA in the ribosome. The EMBO journal, 1996, Feb-15, Volume: 15, Issue:4 Topics: Binding Sites; Cell-Free System; Edetic Acid; Escherichia coli; Nucleic Acid Conformation; Organometallic Compounds; Protein Biosynthesis; Ribosomes; RNA, Messenger; RNA, Ribosomal, 16S; RNA, Ribosomal, 23S; RNA, Transfer, Phe	1996
Site-directed hydroxyl radical probing of the rRNA neighborhood of ribosomal protein S5. Science (New York, N.Y.), 1996, Jun-14, Volume: 272, Issue:5268 Topics: Anti-Bacterial Agents; Cloning, Molecular; Cysteine; Edetic Acid; Escherichia coli; Ferrous Compounds; Hydroxyl Radical; Models, Molecular; Molecular Probes; Mutagenesis, Site-Directed; Nucleic Acid Conformation; Organometallic Compounds; Protein Conformation; Ribosomal Proteins; RNA, Ribosomal; RNA, Ribosomal, 16S; Spectinomycin	1996
Directed hydroxyl radical probing of the rRNA neighborhood of ribosomal protein S13 using tethered Fe(II). RNA (New York, N.Y.), 1996, Volume: 2, Issue:6 Topics: Bacterial Proteins; Cysteine; Edetic Acid; Escherichia coli; Escherichia coli Proteins; Hydrogen Peroxide; Hydroxyl Radical; Iron; Models, Molecular; Molecular Probes; Nucleic Acid Conformation; Organometallic Compounds; Ribosomal Proteins; RNA, Bacterial; RNA, Ribosomal; Ultracentrifugation	1996
The two alpha subunits of Escherichia coli RNA polymerase are asymmetrically arranged and contact different halves of the DNA upstream element. Proceedings of the National Academy of Sciences of the United States of America, 1997, Mar-04, Volume: 94, Issue:5 Topics: Binding Sites; Blotting, Western; DNA-Directed RNA Polymerases; DNA, Bacterial; Edetic Acid; Electrophoresis, Polyacrylamide Gel; Escherichia coli; Hydroxyl Radical; Iron Chelating Agents; Molecular Structure; Mutagenesis, Site-Directed; Organometallic Compounds; Plasmids; Protein Conformation; Recombinant Fusion Proteins; Regulatory Sequences, Nucleic Acid; Transcription, Genetic	1997
Mapping the inside of the ribosome with an RNA helical ruler. Science (New York, N.Y.), 1997, Nov-07, Volume: 278, Issue:5340 Topics: Anticodon; Base Composition; Base Sequence; Edetic Acid; Ferrous Compounds; Hydroxyl Radical; Molecular Sequence Data; Nucleic Acid Conformation; Organometallic Compounds; Ribosomes; RNA Probes; RNA, Ribosomal; RNA, Ribosomal, 16S; RNA, Ribosomal, 23S; RNA, Ribosomal, 5S; RNA, Transfer; RNA, Transfer, Phe	1997
Dimeric association of Escherichia coli RNA polymerase alpha subunits, studied by cleavage of single-cysteine alpha subunits conjugated to iron-(S)-1-[p-(bromoacetamido)benzyl]ethylenediaminetetraacetate. Biochemistry, 1998, Feb-03, Volume: 37, Issue:5 Topics: Alkaline Phosphatase; Biotinylation; Cysteine; Dimerization; DNA-Directed RNA Polymerases; Edetic Acid; Escherichia coli; Hydrolysis; Iron Chelating Agents; Models, Molecular; Mutagenesis, Site-Directed; Organometallic Compounds; Protein Folding; Streptavidin	1998
Ribosomal protein L15 as a probe of 50 S ribosomal subunit structure. Journal of molecular biology, 1998, Dec-18, Volume: 284, Issue:5 Topics: Edetic Acid; Hydroxyl Radical; Iron; Iron Chelating Agents; Lithium Chloride; Nucleic Acid Conformation; Organometallic Compounds; Ribosomal Proteins; Ribosomes; RNA, Ribosomal, 23S	1998
Organization of open complexes at Escherichia coli promoters. Location of promoter DNA sites close to region 2.5 of the sigma70 subunit of RNA polymerase. The Journal of biological chemistry, 1999, Jan-22, Volume: 274, Issue:4 Topics: Base Sequence; DNA-Directed RNA Polymerases; DNA, Recombinant; Edetic Acid; Escherichia coli; Hydrolysis; Iron Chelating Agents; Models, Molecular; Molecular Sequence Data; Mutagenesis, Site-Directed; Organometallic Compounds; Promoter Regions, Genetic; Sigma Factor; Substrate Specificity	1999
Site-directed hydroxyl radical probing of 30S ribosomal subunits by using Fe(II) tethered to an interruption in the 16S rRNA chain. Proceedings of the National Academy of Sciences of the United States of America, 1999, Jan-19, Volume: 96, Issue:2 Topics: Centrifugation, Density Gradient; Edetic Acid; Electrophoresis, Gel, Two-Dimensional; Hydroxyl Radical; Iron Chelating Agents; Microscopy, Electron; Nucleic Acid Conformation; Organometallic Compounds; Ribonucleoproteins; Ribosomal Proteins; RNA, Ribosomal, 16S; RNA, Transfer; Transcription, Genetic	1999
Probing the rRNA environment of ribosomal protein S5 across the subunit interface and inside the 30 S subunit using tethered Fe(II). Journal of molecular biology, 1999, Feb-19, Volume: 286, Issue:2 Topics: Bacterial Proteins; Cell-Free System; Edetic Acid; Escherichia coli; Hydroxyl Radical; Nucleic Acid Conformation; Organometallic Compounds; Protein Conformation; Recombinant Fusion Proteins; Ribosomal Proteins; Ribosomes; RNA, Bacterial; RNA, Ribosomal; RNA, Ribosomal, 16S; RNA, Ribosomal, 23S	1999
Mapping protein-protein interactions with a library of tethered cutting reagents: the binding site of sigma 70 on Escherichia coli RNA polymerase. Biochemistry, 1999, Apr-06, Volume: 38, Issue:14 Topics: Binding Sites; Cross-Linking Reagents; DNA Footprinting; DNA-Directed RNA Polymerases; Edetic Acid; Escherichia coli; Hydrolysis; Imidoesters; Iron Chelating Agents; Models, Molecular; Organometallic Compounds; Peptide Library; Peptide Mapping; Sigma Factor	1999
Directed cleavage of RNA with protein-tethered EDTA-Fe. Methods (San Diego, Calif.), 1999, Volume: 18, Issue:1 Topics: Chelating Agents; Dithionitrobenzoic Acid; Edetic Acid; Hydrogen-Ion Concentration; Iron; Molecular Biology; Organometallic Compounds; Protein Binding; RNA	1999
Mapping the ribosomal RNA neighborhood of protein L11 by directed hydroxyl radical probing. Journal of molecular biology, 1999, Jun-04, Volume: 289, Issue:2 Topics: Amino Acid Substitution; Base Sequence; Binding Sites; Chelating Agents; Cysteine; Edetic Acid; Escherichia coli; Hydroxyl Radical; Iron; Models, Molecular; Molecular Sequence Data; Mutagenesis, Site-Directed; Nucleic Acid Conformation; Polymerase Chain Reaction; Protein Conformation; Recombinant Proteins; Ribosomal Proteins; Ribosomes; RNA, Ribosomal, 23S	1999
Positioning of sigma(S), the stationary phase sigma factor, in Escherichia coli RNA polymerase-promoter open complexes. The EMBO journal, 1999, Jul-15, Volume: 18, Issue:14 Topics: Amino Acid Substitution; Bacterial Proteins; Base Sequence; Consensus Sequence; Cysteine; DNA-Binding Proteins; DNA-Directed RNA Polymerases; DNA, Bacterial; Edetic Acid; Escherichia coli; Genes, Bacterial; Helix-Turn-Helix Motifs; Holoenzymes; Organometallic Compounds; Promoter Regions, Genetic; Sigma Factor	1999
Conservation of sigma-core RNA polymerase proximity relationships between the enhancer-independent and enhancer-dependent sigma classes. The EMBO journal, 2000, Jun-15, Volume: 19, Issue:12 Topics: Amino Acid Sequence; Bacterial Proteins; Binding Sites; Conserved Sequence; Cysteine; DNA Footprinting; DNA-Binding Proteins; DNA-Directed RNA Polymerases; Edetic Acid; Enhancer Elements, Genetic; Escherichia coli; Escherichia coli Proteins; Holoenzymes; Models, Molecular; Mutation; Organometallic Compounds; Protein Binding; RNA Polymerase Sigma 54; Sigma Factor	2000
Directed hydroxyl radical probing using iron(II) tethered to RNA. Methods in enzymology, 2000, Volume: 318 Topics: Edetic Acid; Escherichia coli; Ferrous Compounds; Genetic Techniques; Hydroxyl Radical; Iron; Iron Chelating Agents; Nucleic Acid Heteroduplexes; Oligonucleotides; Organometallic Compounds; RNA; RNA, Ribosomal; RNA, Ribosomal, 23S; RNA, Transfer, Phe; Transcription, Genetic	2000
Directed hydroxyl radical probing of RNA from iron(II) tethered to proteins in ribonucleoprotein complexes. Methods in enzymology, 2000, Volume: 318 Topics: Cysteine; Edetic Acid; Genetic Techniques; Hydroxyl Radical; Iron; Organometallic Compounds; Protein Binding; Ribonucleoproteins; Ribosomal Proteins; RNA; RNA-Binding Proteins; RNA-Directed DNA Polymerase; RNA, Ribosomal, 16S	2000
Phosphorylation-induced signal propagation in the response regulator ntrC. Journal of bacteriology, 2000, Volume: 182, Issue:18 Topics: Bacterial Proteins; Cysteine; Dimerization; DNA-Binding Proteins; Edetic Acid; Iron Chelating Agents; Macromolecular Substances; Organometallic Compounds; Peptide Fragments; Phosphorylation; PII Nitrogen Regulatory Proteins; Protein Multimerization; Salmonella enterica; Signal Transduction; Trans-Activators; Transcription Factors; Transcription, Genetic	2000
Protein-protein interactions mapped by artificial proteases: where sigma factors bind to RNA polymerase. Trends in biochemical sciences, 2000, Volume: 25, Issue:9 Topics: Bacterial Proteins; Blotting, Western; Cysteine; DNA-Directed RNA Polymerases; Edetic Acid; Electrophoresis, Polyacrylamide Gel; Endopeptidases; Iron Chelating Agents; Models, Chemical; Models, Molecular; Organometallic Compounds; Protein Binding; Protein Structure, Secondary; Sigma Factor	2000
Regulatory sequences in sigma 54 localise near the start of DNA melting. Journal of molecular biology, 2001, Mar-02, Volume: 306, Issue:4 Topics: Ascorbic Acid; Base Pairing; Base Sequence; Binding Sites; DNA Probes; DNA-Binding Proteins; DNA-Directed RNA Polymerases; DNA, Bacterial; Edetic Acid; Enhancer Elements, Genetic; Enzyme Stability; Gene Expression Regulation, Bacterial; Holoenzymes; Hydrogen Peroxide; Iron Chelating Agents; Klebsiella pneumoniae; Mutation; Nucleic Acid Denaturation; Nucleic Acid Heteroduplexes; Organometallic Compounds; Oxidoreductases; Promoter Regions, Genetic; Protein Binding; Protein Structure, Tertiary; RNA Polymerase Sigma 54; Sigma Factor; Sinorhizobium meliloti; Transcription, Genetic	2001
Selective binding by the RNA binding domain of PKR revealed by affinity cleavage. Biochemistry, 2001, Apr-10, Volume: 40, Issue:14 Topics: Adenoviridae; Base Sequence; Edetic Acid; eIF-2 Kinase; Ferric Compounds; Hydrolysis; Iron Chelating Agents; Ligands; Molecular Sequence Data; Mutagenesis, Site-Directed; Organometallic Compounds; Protein Binding; Protein Structure, Tertiary; RNA-Binding Proteins; RNA, Catalytic; RNA, Viral	2001
The interaction between sigmaS, the stationary phase sigma factor, and the core enzyme of Escherichia coli RNA polymerase. Genes to cells : devoted to molecular & cellular mechanisms, 2002, Volume: 7, Issue:3 Topics: Bacterial Proteins; Binding Sites; Cysteine; DNA-Directed RNA Polymerases; Edetic Acid; Electrophoretic Mobility Shift Assay; Escherichia coli; Mutagenesis, Site-Directed; Protein Binding; Protein Footprinting; Sequence Analysis, Protein; Sigma Factor	2002
Early organization of pre-mRNA during spliceosome assembly. Nature structural biology, 2002, Volume: 9, Issue:8 Topics: Adenosine Triphosphate; Base Sequence; Binding Sites; Dithiothreitol; Edetic Acid; HeLa Cells; Humans; Hydroxyl Radical; In Vitro Techniques; Models, Biological; Molecular Probes; Organometallic Compounds; Ribonucleoprotein, U1 Small Nuclear; RNA Precursors; RNA Splicing; Spliceosomes	2002
Structural transitions mediating transcription initiation by T7 RNA polymerase. Cell, 2002, Jul-12, Volume: 110, Issue:1 Topics: Binding Sites; Cysteine; DNA; DNA-Directed RNA Polymerases; Edetic Acid; Iron Chelating Agents; Microscopy, Atomic Force; Models, Molecular; Nucleic Acid Conformation; Organometallic Compounds; Protein Conformation; RNA; Structure-Activity Relationship; Transcription Initiation Site; Transcription, Genetic; Viral Proteins	2002
Direct detection of protein thiol derivatization by PAGE. BioTechniques, 2002, Volume: 33, Issue:6 Topics: Amino Acid Substitution; Cysteine; Edetic Acid; Electrophoresis, Polyacrylamide Gel; Electrophoretic Mobility Shift Assay; Iron Chelating Agents; Iron Radioisotopes; Isotope Labeling; Organometallic Compounds; Oxidation-Reduction; Sulfhydryl Compounds; Viral Proteins	2002
Mapping sigma 54-RNA polymerase interactions at the -24 consensus promoter element. The Journal of biological chemistry, 2003, Aug-08, Volume: 278, Issue:32 Topics: Amino Acid Sequence; Cysteine; Deoxyribonuclease I; DNA; DNA-Binding Proteins; DNA-Directed RNA Polymerases; DNA, Superhelical; Edetic Acid; Escherichia coli; Escherichia coli Proteins; Klebsiella pneumoniae; Molecular Sequence Data; Oxidoreductases; Promoter Regions, Genetic; Protein Binding; Protein Conformation; Protein Structure, Tertiary; RNA Polymerase Sigma 54; Sequence Homology, Amino Acid; Sigma Factor; Sinorhizobium meliloti; Transcription, Genetic	2003
Principles and methods of affinity cleavage in studying transcription. Methods in enzymology, 2003, Volume: 371 Topics: Binding Sites; Binding, Competitive; Biochemistry; Blotting, Western; Chelating Agents; Cross-Linking Reagents; Cysteine; DNA; DNA-Directed RNA Polymerases; Edetic Acid; Electrophoresis, Polyacrylamide Gel; Enzyme-Linked Immunosorbent Assay; Escherichia coli; Hydrogen-Ion Concentration; Ions; Iron; Models, Chemical; Models, Molecular; Mutation; Peptides; Polymers; Protein Binding; Thermus; Transcription, Genetic	2003
Location of the Escherichia coli RNA polymerase alpha subunit C-terminal domain at an FNR-dependent promoter: analysis using an artificial nuclease. FEBS letters, 2004, Jan-30, Volume: 558, Issue:1-3 Topics: Base Sequence; Binding Sites; Cyclic AMP Receptor Protein; Dimerization; DNA-Directed RNA Polymerases; Edetic Acid; Escherichia coli; Escherichia coli Proteins; Iron-Sulfur Proteins; Models, Chemical; Models, Molecular; Molecular Sequence Data; Promoter Regions, Genetic; Protein Structure, Tertiary; Trans-Activators; Transcription Factors; Transcriptional Activation	2004
Mapping the location of TFIIB within the RNA polymerase II transcription preinitiation complex: a model for the structure of the PIC. Cell, 2004, Oct-15, Volume: 119, Issue:2 Topics: Cross-Linking Reagents; Edetic Acid; Humans; Models, Genetic; Models, Molecular; Multienzyme Complexes; Nucleic Acid Conformation; Promoter Regions, Genetic; Protein Conformation; Protein Subunits; RNA Polymerase II; Saccharomyces cerevisiae Proteins; TATA Box; Transcription Factor TFIIB; Transcription Factors, TFII; Transcription Initiation Site; Transcription, Genetic	2004
Proximity of conserved U6 and U2 snRNA elements to the 5' splice site region in activated spliceosomes. The EMBO journal, 2006, Jun-07, Volume: 25, Issue:11 Topics: Base Sequence; Edetic Acid; Hydroxyl Radical; Introns; Models, Molecular; Molecular Sequence Data; Molecular Structure; Nucleic Acid Conformation; RNA Precursors; RNA Splicing; RNA, Small Nuclear; Spliceosomes	2006
The 5' end of U2 snRNA is in close proximity to U1 and functional sites of the pre-mRNA in early spliceosomal complexes. Molecular cell, 2007, Feb-09, Volume: 25, Issue:3 Topics: Edetic Acid; Nucleic Acid Conformation; RNA Precursors; RNA Splice Sites; RNA Splicing; RNA, Messenger; RNA, Small Nuclear; Spliceosomes	2007
Alanine scanning and Fe-BABE probing of the bacteriophage ø29 prohead RNA-connector interaction. Journal of molecular biology, 2007, May-25, Volume: 369, Issue:1 Topics: Alanine; Amino Acid Sequence; Amino Acid Substitution; Bacteriophages; Base Sequence; Capsid Proteins; Cysteine; DNA Packaging; Edetic Acid; Electrophoresis, Polyacrylamide Gel; Electrophoretic Mobility Shift Assay; Hydroxyl Radical; Models, Molecular; Molecular Sequence Data; Mutant Proteins; Mutation; Nucleic Acid Conformation; Protein Binding; RNA, Viral; Sequence Alignment	2007
Interaction of SmpB with ribosome from directed hydroxyl radical probing. Nucleic acids research, 2007, Volume: 35, Issue:21 Topics: Binding Sites; Edetic Acid; Escherichia coli Proteins; Hydroxyl Radical; Models, Molecular; Mutation; Protein Biosynthesis; Ribosome Subunits, Large, Bacterial; RNA-Binding Proteins; RNA, Bacterial; RNA, Messenger; RNA, Transfer	2007
Hydroxyl radical probing of tRNA (Gm18) methyltransferase [TrmH]-AdoMet-artificial tRNA ternary complex. Nucleic acids symposium series (2004), 2007, Issue:51 Topics: Binding Sites; Deoxyguanine Nucleotides; Edetic Acid; Hydroxyl Radical; Kinetics; Mutation; RNA, Transfer; S-Adenosylmethionine; tRNA Methyltransferases	2007
Promoter activation by repositioning of RNA polymerase. Journal of bacteriology, 2008, Volume: 190, Issue:9 Topics: Amino Acid Substitution; Bacillus subtilis; Bacterial Proteins; Base Sequence; DNA Footprinting; DNA-Directed RNA Polymerases; Edetic Acid; Gene Expression Regulation, Bacterial; Models, Molecular; Molecular Sequence Data; Mutation; Promoter Regions, Genetic; Sigma Factor; Transcription Factors	2008
Mapping protein-protein interactions by localized oxidation: consequences of the reach of hydroxyl radical. Biochemistry, 2009, Jun-02, Volume: 48, Issue:21 Topics: Animals; Cattle; Cysteine; DNA-Directed RNA Polymerases; Edetic Acid; Escherichia coli; Hydroxyl Radical; Models, Molecular; Mutation; Oxidation-Reduction; Protein Binding; Protein Conformation; Thermus	2009
Regulation of translocation polarity by helicase domain 1 in SF2B helicases. The EMBO journal, 2012, Jan-18, Volume: 31, Issue:2 Topics: Amino Acid Sequence; Binding Sites; Conserved Sequence; DNA Helicases; DNA, Single-Stranded; Edetic Acid; Iron-Sulfur Proteins; Models, Molecular; Molecular Sequence Data; Motion; Mutagenesis, Site-Directed; Protein Binding; Protein Conformation; Protein Structure, Tertiary; Sequence Alignment; Sequence Homology, Amino Acid; Structure-Activity Relationship; Thermoplasma	2012
Structural and mechanistic basis of anti-termination of Rho-dependent transcription termination by bacteriophage P4 capsid protein Psu. Nucleic acids research, 2013, Volume: 41, Issue:14 Topics: Adenosine Triphosphatases; Capsid Proteins; Cross-Linking Reagents; Cysteine; Edetic Acid; Fluorescence Resonance Energy Transfer; Models, Molecular; Mutation; Protein Footprinting; Rho Factor; Transcription Termination, Genetic	2013
Conformational changes in the P site and mRNA entry channel evoked by AUG recognition in yeast translation preinitiation complexes. Nucleic acids research, 2015, Feb-27, Volume: 43, Issue:4 Topics: Amino Acid Substitution; Codon, Initiator; Cysteine; Edetic Acid; Eukaryotic Initiation Factor-1; Peptide Chain Initiation, Translational; Ribosome Subunits, Small, Eukaryotic; RNA, Messenger; RNA, Ribosomal, 18S; RNA, Transfer, Met; Yeasts	2015
Determining the Architecture of a Protein-DNA Complex by Combining FeBABE Cleavage Analyses, 3-D Printed Structures, and the ICM Molsoft Program. Methods in molecular biology (Clifton, N.J.), 2015, Volume: 1334 Topics: Binding Sites; DNA; DNA-Binding Proteins; DNA, B-Form; Edetic Acid; Escherichia coli; Macromolecular Substances; Magnetic Resonance Spectroscopy; Printing, Three-Dimensional; Promoter Regions, Genetic; Software	2015
Site-Directed Chemical Probing to map transient RNA/protein interactions. Methods (San Diego, Calif.), 2017, 03-15, Volume: 117 Topics: Base Sequence; Biphenyl Compounds; Edetic Acid; Escherichia coli; Gene Expression; Hydroxyl Radical; Models, Molecular; Molecular Chaperones; Molecular Imprinting; Molecular Probes; Mutagenesis, Site-Directed; Nucleic Acid Conformation; Protein Conformation; Recombinant Proteins; RNA; RNA-Binding Proteins; Staining and Labeling	2017