Page last updated: 2024-12-08

fixb protein, e coli

Description Research Excerpts Clinical Trials Roles Classes Pathways Study Profile Bioassays Related Drugs Related Conditions Protein Interactions Research Growth Market Indicators

Description

muscarinic toxin 2: muscarinic agonists from Dendroaspis angusticeps; amino acid sequence given in first source [Medical Subject Headings (MeSH), National Library of Medicine, extracted Dec-2023]

alpha-D-mannoside : Any mannoside in which the anomeric centre has alpha-configuration. [Chemical Entities of Biological Interest (ChEBI), Hastings J, Owen G, Dekker A, Ennis M, Kale N, Muthukrishnan V, Turner S, Swainston N, Mendes P, Steinbeck C. (2016). ChEBI in 2016: Improved services and an expanding collection of metabolites. Nucleic Acids Res]

alpha-D-mannose : D-Mannopyranose having alpha-configuration at the anomeric centre. [Chemical Entities of Biological Interest (ChEBI), Hastings J, Owen G, Dekker A, Ennis M, Kale N, Muthukrishnan V, Turner S, Swainston N, Mendes P, Steinbeck C. (2016). ChEBI in 2016: Improved services and an expanding collection of metabolites. Nucleic Acids Res]

Cross-References

ID SourceID
PubMed CID185698
CHEMBL ID365590
CHEBI ID28729
CHEBI ID27535
SCHEMBL ID76882
MeSH IDM0186996

Synonyms (41)

Synonym
CHEMBL365590 ,
alpha-d-man
CHEBI:28729 ,
d(+)-mannose
alpha-d-mannose
C00936
alpha-d-mannoside
alpha-d-mannopyranose
1RDL
1RIN
7296-15-3
WQZGKKKJIJFFOK-PQMKYFCFSA-N
manalpha1,
(2s,3s,4s,5s,6r)-6-(hydroxymethyl)oxane-2,3,4,5-tetrol
101357-35-1
137498-12-5
(+-)-mannose
w3f28j9g0w ,
unii-w3f28j9g0w
alpha-mannose
101357-07-7
135317-04-3
muscarinic toxin 2
EPITOPE ID:130701
.alpha.-d-mannose
.alpha.-d-mannopyranose
.alpha.-mannose
SCHEMBL76882
3h-mannose
alpha-d-mannopyranoside
CHEBI:27535
alpha-d-mannosides ,
alpha-d-mannopyranosides
hydroboracite
alpha-d-mannose; d-mannose; mannose
(2s,3s,4s,5s,6r)-6-(hydroxymethyl)tetrahydro-2h-pyran-2,3,4,5-tetraol
12046-12-7
Q27103868
DTXSID001015858
bdbm50467903
calcium sulfide (cas), solid soln. with strontium sulfide, bismuth and europium-doped
[information is derived through text-mining from research data collected from National Library of Medicine (NLM), extracted Dec-2023]

Roles (1)

RoleDescription
epitopeThe biological role played by a material entity when bound by a receptor of the adaptive immune system. Specific site on an antigen to which an antibody binds.
[role information is derived from Chemical Entities of Biological Interest (ChEBI), Hastings J, Owen G, Dekker A, Ennis M, Kale N, Muthukrishnan V, Turner S, Swainston N, Mendes P, Steinbeck C. (2016). ChEBI in 2016: Improved services and an expanding collection of metabolites. Nucleic Acids Res]

Drug Classes (1)

ClassDescription
D-mannopyranoseD-Mannose in its six-membered ring form.
[compound class information is derived from Chemical Entities of Biological Interest (ChEBI), Hastings J, Owen G, Dekker A, Ennis M, Kale N, Muthukrishnan V, Turner S, Swainston N, Mendes P, Steinbeck C. (2016). ChEBI in 2016: Improved services and an expanding collection of metabolites. Nucleic Acids Res]

Pathways (10)

PathwayProteinsCompounds
Mannose Metabolism913
Amino Sugar and Nucleotide Sugar Metabolism II2231
Colanic Acid Building Blocks Biosynthesis1723
mannitol degradation II113
Renz2020 - GEM of Human alveolar macrophage with SARS-CoV-20490
D-mannose degradation II06
complex N-linked glycan biosynthesis (plants)09
complex N-linked glycan biosynthesis (vertebrates)1417
complex N-linked glycan biosynthesis (plants)816
AtMetExpress overview0109
Biochemical pathways: part I0466

Protein Targets (9)

Inhibition Measurements

ProteinTaxonomyMeasurementAverageMin (ref.)Avg (ref.)Max (ref.)Bioassay(s)
Chain 1, Mannose-binding Protein-cRattus rattus (black rat)Ki5,700.00005,700.00005,700.00005,700.0000AID977610
Chain 1, Mannose-binding Protein-cRattus rattus (black rat)Ki5,700.00005,700.00005,700.00005,700.0000AID977610
Chain 1, Mannose-binding Protein-cRattus rattus (black rat)Ki5,700.00005,700.00005,700.00005,700.0000AID977610
Chain 1, Mannose-binding Protein-cRattus rattus (black rat)Ki5,700.00005,700.00005,700.00005,700.0000AID977610
[prepared from compound, protein, and bioassay information from National Library of Medicine (NLM), extracted Dec-2023]

Activation Measurements

ProteinTaxonomyMeasurementAverageMin (ref.)Avg (ref.)Max (ref.)Bioassay(s)
Chain A, Pea LectinPisum sativum (garden pea)Kd700.0000700.0000700.0000700.0000AID977611
Chain B, Pea LectinPisum sativum (garden pea)Kd700.0000700.0000700.0000700.0000AID977611
Type 1 fimbrin D-mannose specific adhesinEscherichia coli K-12Kd2.30002.20002.25002.3000AID1885011
[prepared from compound, protein, and bioassay information from National Library of Medicine (NLM), extracted Dec-2023]

Biological Processes (26)

Processvia Protein(s)Taxonomy
cell adhesionType 1 fimbrin D-mannose specific adhesinEscherichia coli K-12
cell adhesionType 1 fimbrin D-mannose specific adhesinEscherichia coli K-12
mechanosensory behaviorType 1 fimbrin D-mannose specific adhesinEscherichia coli K-12
cell-substrate adhesionType 1 fimbrin D-mannose specific adhesinEscherichia coli K-12
cell adhesion involved in single-species biofilm formationType 1 fimbrin D-mannose specific adhesinEscherichia coli K-12
pilus organizationType 1 fimbrin D-mannose specific adhesinEscherichia coli K-12
adaptive immune responseC-type lectin domain family 4 member MHomo sapiens (human)
leukocyte cell-cell adhesionC-type lectin domain family 4 member MHomo sapiens (human)
cell-cell recognitionC-type lectin domain family 4 member MHomo sapiens (human)
virion attachment to host cellC-type lectin domain family 4 member MHomo sapiens (human)
receptor-mediated endocytosis of virus by host cellC-type lectin domain family 4 member MHomo sapiens (human)
viral genome replicationC-type lectin domain family 4 member MHomo sapiens (human)
antigen processing and presentationC-type lectin domain family 4 member MHomo sapiens (human)
intracellular signal transductionC-type lectin domain family 4 member MHomo sapiens (human)
innate immune responseC-type lectin domain family 4 member MHomo sapiens (human)
symbiont entry into host cellC-type lectin domain family 4 member MHomo sapiens (human)
receptor-mediated virion attachment to host cellC-type lectin domain family 4 member MHomo sapiens (human)
peptide antigen transportC-type lectin domain family 4 member MHomo sapiens (human)
intracellular transport of virusC-type lectin domain family 4 member MHomo sapiens (human)
immune responseC-type lectin domain family 4 member MHomo sapiens (human)
biological process involved in interspecies interaction between organismsC-type lectin domain family 4 member MHomo sapiens (human)
regulation of T cell proliferationCD209 antigenHomo sapiens (human)
adaptive immune responseCD209 antigenHomo sapiens (human)
endocytosisCD209 antigenHomo sapiens (human)
heterophilic cell-cell adhesion via plasma membrane cell adhesion moleculesCD209 antigenHomo sapiens (human)
leukocyte cell-cell adhesionCD209 antigenHomo sapiens (human)
cell-cell recognitionCD209 antigenHomo sapiens (human)
virion attachment to host cellCD209 antigenHomo sapiens (human)
viral genome replicationCD209 antigenHomo sapiens (human)
antigen processing and presentationCD209 antigenHomo sapiens (human)
intracellular signal transductionCD209 antigenHomo sapiens (human)
positive regulation of T cell proliferationCD209 antigenHomo sapiens (human)
innate immune responseCD209 antigenHomo sapiens (human)
symbiont entry into host cellCD209 antigenHomo sapiens (human)
peptide antigen transportCD209 antigenHomo sapiens (human)
intracellular transport of virusCD209 antigenHomo sapiens (human)
B cell adhesionCD209 antigenHomo sapiens (human)
positive regulation of viral life cycleCD209 antigenHomo sapiens (human)
immune responseCD209 antigenHomo sapiens (human)
biological process involved in interspecies interaction between organismsCD209 antigenHomo sapiens (human)
[Information is prepared from geneontology information from the June-17-2024 release]

Molecular Functions (10)

Processvia Protein(s)Taxonomy
protein bindingType 1 fimbrin D-mannose specific adhesinEscherichia coli K-12
mannose bindingType 1 fimbrin D-mannose specific adhesinEscherichia coli K-12
virus receptor activityC-type lectin domain family 4 member MHomo sapiens (human)
protein bindingC-type lectin domain family 4 member MHomo sapiens (human)
carbohydrate bindingC-type lectin domain family 4 member MHomo sapiens (human)
ICAM-3 receptor activityC-type lectin domain family 4 member MHomo sapiens (human)
signaling receptor activityC-type lectin domain family 4 member MHomo sapiens (human)
peptide antigen bindingC-type lectin domain family 4 member MHomo sapiens (human)
virion bindingC-type lectin domain family 4 member MHomo sapiens (human)
metal ion bindingC-type lectin domain family 4 member MHomo sapiens (human)
calcium-dependent protein bindingC-type lectin domain family 4 member MHomo sapiens (human)
mannose bindingC-type lectin domain family 4 member MHomo sapiens (human)
virus receptor activityCD209 antigenHomo sapiens (human)
protein bindingCD209 antigenHomo sapiens (human)
mannose bindingCD209 antigenHomo sapiens (human)
carbohydrate bindingCD209 antigenHomo sapiens (human)
peptide antigen bindingCD209 antigenHomo sapiens (human)
virion bindingCD209 antigenHomo sapiens (human)
metal ion bindingCD209 antigenHomo sapiens (human)
[Information is prepared from geneontology information from the June-17-2024 release]

Ceullar Components (10)

Processvia Protein(s)Taxonomy
pilusType 1 fimbrin D-mannose specific adhesinEscherichia coli K-12
host cell membraneType 1 fimbrin D-mannose specific adhesinEscherichia coli K-12
pilus tipType 1 fimbrin D-mannose specific adhesinEscherichia coli K-12
pilusType 1 fimbrin D-mannose specific adhesinEscherichia coli K-12
extracellular regionC-type lectin domain family 4 member MHomo sapiens (human)
cytoplasmC-type lectin domain family 4 member MHomo sapiens (human)
plasma membraneC-type lectin domain family 4 member MHomo sapiens (human)
membraneC-type lectin domain family 4 member MHomo sapiens (human)
host cellC-type lectin domain family 4 member MHomo sapiens (human)
external side of plasma membraneC-type lectin domain family 4 member MHomo sapiens (human)
extracellular regionCD209 antigenHomo sapiens (human)
cytoplasmCD209 antigenHomo sapiens (human)
plasma membraneCD209 antigenHomo sapiens (human)
external side of plasma membraneCD209 antigenHomo sapiens (human)
cell surfaceCD209 antigenHomo sapiens (human)
membraneCD209 antigenHomo sapiens (human)
host cellCD209 antigenHomo sapiens (human)
external side of plasma membraneCD209 antigenHomo sapiens (human)
[Information is prepared from geneontology information from the June-17-2024 release]

Bioassays (10)

Assay IDTitleYearJournalArticle
AID756905Antiadhesive activity against type-1 piliated adherent-invasive Escherichia coli LF82 assessed as decrease in residual bacterial adhesion to colonic tissue isolated from FVB/N transgenic mouse expressing human CEACAM6 at 10 umol after 1 hr relative to con2013Journal of medicinal chemistry, Jul-11, Volume: 56, Issue:13
Thiazolylaminomannosides as potent antiadhesives of type 1 piliated Escherichia coli isolated from Crohn's disease patients.
AID756902Antiadhesive activity against type-1 piliated adherent-invasive Escherichia coli LF82 assessed as inhibition of bacterial adhesion to colonic tissue isolated from FVB/N transgenic mouse expressing human CEACAM6 after 1 hr2013Journal of medicinal chemistry, Jul-11, Volume: 56, Issue:13
Thiazolylaminomannosides as potent antiadhesives of type 1 piliated Escherichia coli isolated from Crohn's disease patients.
AID756909Antiadhesive activity against type-1 piliated adherent-invasive Escherichia coli LF82 assessed as residual bacterial adhesion to human T84 cells overexpressing CEACAM6 at 1000 uM incubated for 1 hr prior to infection measured after 3 hrs relative to contr2013Journal of medicinal chemistry, Jul-11, Volume: 56, Issue:13
Thiazolylaminomannosides as potent antiadhesives of type 1 piliated Escherichia coli isolated from Crohn's disease patients.
AID756910Antiadhesive activity against type-1 piliated adherent-invasive Escherichia coli LF82 assessed as inhibition of bacterial adhesion to human T84 cells overexpressing CEACAM6 incubated for 1 hr prior to infection measured after 3 hrs2013Journal of medicinal chemistry, Jul-11, Volume: 56, Issue:13
Thiazolylaminomannosides as potent antiadhesives of type 1 piliated Escherichia coli isolated from Crohn's disease patients.
AID1422774Inhibition of binding of trimannoside containing horseradish peroxidase to DC-SIGN carbohydrate binding domain (unknown origin) expressed in Escherichia coli preincubated for 1 hr followed by TMB substrate addition measured after 30 mins by ELISA2018Bioorganic & medicinal chemistry, 10-15, Volume: 26, Issue:19
Genetically-encoded fragment-based discovery of glycopeptide ligands for DC-SIGN.
AID1885011Binding affinity to Escherichia coli FimH assessed as dissociation constant by SPR analysis2022Journal of medicinal chemistry, 07-14, Volume: 65, Issue:13
Small Carbohydrate Derivatives as Potent Antibiofilm Agents.
AID1811208Inhibition of DC-SIGN extracellular domain (unknown origin) binding to HIV gp120 by surface plasmon resonance analysis2021Journal of medicinal chemistry, 10-14, Volume: 64, Issue:19
Low-Valent Calix[4]arene Glycoconjugates Based on Hydroxamic Acid Bearing Linkers as Potent Inhibitors in a Model of Ebola Virus Cis-Infection and HCMV-gB-Recombinant Glycoprotein Interaction with MDDC Cells by Blocking DC-SIGN.
AID1811Experimentally measured binding affinity data derived from PDB1996The Journal of biological chemistry, Jan-12, Volume: 271, Issue:2
Structural analysis of monosaccharide recognition by rat liver mannose-binding protein.
AID977610Experimentally measured binding affinity data (Ki) for protein-ligand complexes derived from PDB1996The Journal of biological chemistry, Jan-12, Volume: 271, Issue:2
Structural analysis of monosaccharide recognition by rat liver mannose-binding protein.
AID977611Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDB1993The Journal of biological chemistry, May-15, Volume: 268, Issue:14
X-ray crystal structure of a pea lectin-trimannoside complex at 2.6 A resolution.
[information is prepared from bioassay data collected from National Library of Medicine (NLM), extracted Dec-2023]

Research

Studies (19)

TimeframeStudies, This Drug (%)All Drugs %
pre-19900 (0.00)18.7374
1990's11 (57.89)18.2507
2000's3 (15.79)29.6817
2010's3 (15.79)24.3611
2020's2 (10.53)2.80
[information is prepared from research data collected from National Library of Medicine (NLM), extracted Dec-2023]

Market Indicators

Research Demand Index: 11.61

According to the monthly volume, diversity, and competition of internet searches for this compound, as well the volume and growth of publications, there is estimated to be weak demand-to-supply ratio for research on this compound.

MetricThis Compound (vs All)
Research Demand Index11.61 (24.57)
Research Supply Index3.00 (2.92)
Research Growth Index4.61 (4.65)
Search Engine Demand Index0.00 (26.88)
Search Engine Supply Index0.00 (0.95)

This Compound (11.61)

All Compounds (24.57)

Study Types

Publication TypeThis drug (%)All Drugs (%)
Trials0 (0.00%)5.53%
Reviews2 (10.53%)6.00%
Case Studies0 (0.00%)4.05%
Observational0 (0.00%)0.25%
Other17 (89.47%)84.16%
[information is prepared from research data collected from National Library of Medicine (NLM), extracted Dec-2023]